RNA–Protein interactions for RNA: ENST00000216877.10

PTPRA-201, Transcript of protein tyrosine phosphatase, receptor type A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPRA, Length 3,725 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRA-201ENST00000216877 ZNF570Q96NI8 536 aa16.2■□□□□ 0.18
PTPRA-201ENST00000216877 SNX12Q9UMY4 172 aa16.2■□□□□ 0.18
PTPRA-201ENST00000216877 THRAP3Q9Y2W1 955 aaKnown RBP16.2■□□□□ 0.18
PTPRA-201ENST00000216877 SIPA1L3O60292 1781 aaPredicted RBP16.2■□□□□ 0.18
PTPRA-201ENST00000216877 RGPD2P0DJD1 1756 aa16.2■□□□□ 0.18
PTPRA-201ENST00000216877 CDKL5O76039 1030 aa16.2■□□□□ 0.18
PTPRA-201ENST00000216877 CDCA2Q69YH5 1023 aaPredicted RBP16.2■□□□□ 0.18
PTPRA-201ENST00000216877 TTLL7Q6ZT98 887 aa16.2■□□□□ 0.18
PTPRA-201ENST00000216877 NELFBQ8WX92 580 aa16.2■□□□□ 0.18
PTPRA-201ENST00000216877 KLHL29Q96CT2 875 aa16.2■□□□□ 0.18
PTPRA-201ENST00000216877 NHEJ1Q9H9Q4 299 aaPredicted RBP16.2■□□□□ 0.18
PTPRA-201ENST00000216877 PRDM11Q9NQV5 511 aa16.2■□□□□ 0.18
PTPRA-201ENST00000216877 BSDC1Q9NW68 430 aaPredicted RBP16.2■□□□□ 0.18
PTPRA-201ENST00000216877 ZFATQ9P243 1243 aa16.2■□□□□ 0.18
PTPRA-201ENST00000216877 PCDHB6Q9Y5E3 794 aa16.2■□□□□ 0.18
PTPRA-201ENST00000216877 ZNF213O14771 459 aa16.19■□□□□ 0.18
PTPRA-201ENST00000216877 NEXNQ0ZGT2 675 aa16.19■□□□□ 0.18
PTPRA-201ENST00000216877 NR5A1Q13285 461 aa16.19■□□□□ 0.18
PTPRA-201ENST00000216877 TNNI3KQ59H18 835 aa16.19■□□□□ 0.18
PTPRA-201ENST00000216877 TTC5Q8N0Z6 440 aa16.19■□□□□ 0.18
PTPRA-201ENST00000216877 UHMK1Q8TAS1 419 aaKnown RBP16.19■□□□□ 0.18
PTPRA-201ENST00000216877 TRIM47Q96LD4 638 aa16.19■□□□□ 0.18
PTPRA-201ENST00000216877 AGPAT5Q9NUQ2 364 aa16.19■□□□□ 0.18
PTPRA-201ENST00000216877 DBF4Q9UBU7 674 aaPredicted RBP16.19■□□□□ 0.18
PTPRA-201ENST00000216877 FPGT-TNNI3KV9GXZ4 949 aa16.19■□□□□ 0.18
PTPRA-201ENST00000216877 ZNF609O15014 1411 aa16.19■□□□□ 0.18
PTPRA-201ENST00000216877 hCG_2014768A0A024R1R8 64 aa16.19■□□□□ 0.18
PTPRA-201ENST00000216877 PROSER3Q2NL68 480 aa16.19■□□□□ 0.18
PTPRA-201ENST00000216877 HAUS3Q68CZ6 603 aa16.19■□□□□ 0.18
PTPRA-201ENST00000216877 NCOA7Q8NI08 942 aa16.19■□□□□ 0.18
PTPRA-201ENST00000216877 HOMER3Q9NSC5 361 aa16.19■□□□□ 0.18
PTPRA-201ENST00000216877 PAG1Q9NWQ8 432 aa16.19■□□□□ 0.18
PTPRA-201ENST00000216877 CAPN6Q9Y6Q1 641 aa16.19■□□□□ 0.18
PTPRA-201ENST00000216877 SALL1Q9NSC2 1324 aa16.19■□□□□ 0.18
PTPRA-201ENST00000216877 LACTBP83111 547 aaPredicted RBP16.19■□□□□ 0.18
PTPRA-201ENST00000216877 TDRD12Q587J7 1177 aaKnown RBP16.19■□□□□ 0.18
PTPRA-201ENST00000216877 SYCP3Q8IZU3 236 aa16.19■□□□□ 0.18
PTPRA-201ENST00000216877 HYOU1Q9Y4L1 999 aa16.19■□□□□ 0.18
PTPRA-201ENST00000216877 ABCA3Q99758 1704 aa16.19■□□□□ 0.18
PTPRA-201ENST00000216877 KAT6BQ8WYB5 2073 aa16.19■□□□□ 0.18
PTPRA-201ENST00000216877 SMNDC1O75940 238 aaKnown RBP eCLIP16.18■□□□□ 0.18
PTPRA-201ENST00000216877 EPB41P11171 864 aaKnown RBP16.18■□□□□ 0.18
PTPRA-201ENST00000216877 ATP4AP20648 1035 aa16.18■□□□□ 0.18
PTPRA-201ENST00000216877 SCNN1BP51168 640 aa16.18■□□□□ 0.18
PTPRA-201ENST00000216877 ERICH1Q86X53 443 aa16.18■□□□□ 0.18
PTPRA-201ENST00000216877 KBTBD3Q8NAB2 608 aa16.18■□□□□ 0.18
PTPRA-201ENST00000216877 PIDD1Q9HB75 910 aa16.18■□□□□ 0.18
PTPRA-201ENST00000216877 RPS6KL1Q9Y6S9 549 aa16.18■□□□□ 0.18
PTPRA-201ENST00000216877 COL18A1P39060 1754 aa16.18■□□□□ 0.18
PTPRA-201ENST00000216877 A8MUI8 341 aa16.18■□□□□ 0.18
PTPRA-201ENST00000216877 PIP4K2AP48426 406 aaPredicted RBP16.18■□□□□ 0.18
PTPRA-201ENST00000216877 ATP11AP98196 1134 aa16.18■□□□□ 0.18
PTPRA-201ENST00000216877 SPAG1Q07617 926 aa16.18■□□□□ 0.18
PTPRA-201ENST00000216877 TOM1L2Q6ZVM7 507 aa16.18■□□□□ 0.18
PTPRA-201ENST00000216877 DDX42Q86XP3 938 aaKnown RBP eCLIP16.18■□□□□ 0.18
PTPRA-201ENST00000216877 CREG2Q8IUH2 290 aa16.18■□□□□ 0.18
PTPRA-201ENST00000216877 LMNTD2Q8IXW0 634 aa16.18■□□□□ 0.18
PTPRA-201ENST00000216877 ATXN2Q99700 1313 aaKnown RBP16.18■□□□□ 0.18
PTPRA-201ENST00000216877 ERICH2A1L162 156 aa16.18■□□□□ 0.18
PTPRA-201ENST00000216877 TRIM49BA6NDI0 452 aa16.18■□□□□ 0.18
PTPRA-201ENST00000216877 CCT8L1PA6NM43 557 aa16.18■□□□□ 0.18
PTPRA-201ENST00000216877 H0Y3Z8 333 aa16.18■□□□□ 0.18
PTPRA-201ENST00000216877 MGRN1O60291 552 aa16.18■□□□□ 0.18
PTPRA-201ENST00000216877 SESN3P58005 492 aa16.18■□□□□ 0.18
PTPRA-201ENST00000216877 KCNJ2P63252 427 aa16.18■□□□□ 0.18
PTPRA-201ENST00000216877 PAK1Q13153 545 aa16.18■□□□□ 0.18
PTPRA-201ENST00000216877 KSR1Q8IVT5 923 aa16.18■□□□□ 0.18
PTPRA-201ENST00000216877 MST1RQ04912 1400 aa16.17■□□□□ 0.18
PTPRA-201ENST00000216877 FAM170AA1A519 330 aa16.17■□□□□ 0.18
PTPRA-201ENST00000216877 ANKRD33BA6NCL7 494 aa16.17■□□□□ 0.18
PTPRA-201ENST00000216877 IFIT1P09914 478 aaKnown RBP16.17■□□□□ 0.18
PTPRA-201ENST00000216877 XRCC4Q13426 336 aa16.17■□□□□ 0.18
PTPRA-201ENST00000216877 TRIM14Q14142 442 aa16.17■□□□□ 0.18
PTPRA-201ENST00000216877 TRIML1Q8N9V2 468 aa16.17■□□□□ 0.18
PTPRA-201ENST00000216877 SLC17A8Q8NDX2 589 aa16.17■□□□□ 0.18
PTPRA-201ENST00000216877 EPAS1Q99814 870 aa16.17■□□□□ 0.18
PTPRA-201ENST00000216877 DNAJC5Q9H3Z4 198 aa16.17■□□□□ 0.18
PTPRA-201ENST00000216877 B4DLN1 442 aa16.17■□□□□ 0.18
PTPRA-201ENST00000216877 MTIF2P46199 727 aaKnown RBP16.17■□□□□ 0.18
PTPRA-201ENST00000216877 SSRP1Q08945 709 aaKnown RBP16.17■□□□□ 0.18
PTPRA-201ENST00000216877 CFAP221Q4G0U5 840 aa16.17■□□□□ 0.18
PTPRA-201ENST00000216877 GLE1Q53GS7 698 aaKnown RBP16.17■□□□□ 0.18
PTPRA-201ENST00000216877 C6orf89Q6UWU4 347 aa16.17■□□□□ 0.18
PTPRA-201ENST00000216877 C2CD5Q86YS7 1000 aa16.17■□□□□ 0.18
PTPRA-201ENST00000216877 MMGT1Q8N4V1 131 aa16.17■□□□□ 0.18
PTPRA-201ENST00000216877 MGARPQ8TDB4 240 aa16.17■□□□□ 0.18
PTPRA-201ENST00000216877 PLIN2Q99541 437 aa16.17■□□□□ 0.18
PTPRA-201ENST00000216877 PACSIN2Q9UNF0 486 aaPredicted RBP16.17■□□□□ 0.18
PTPRA-201ENST00000216877 RTN3O95197 1032 aaPredicted RBP16.17■□□□□ 0.18
PTPRA-201ENST00000216877 CNGA1P29973 690 aa16.17■□□□□ 0.18
PTPRA-201ENST00000216877 ITGB3BPQ13352 177 aaPredicted RBP16.17■□□□□ 0.18
PTPRA-201ENST00000216877 TBC1D25Q3MII6 688 aa16.17■□□□□ 0.18
PTPRA-201ENST00000216877 PPP4R3AQ6IN85 833 aa16.17■□□□□ 0.18
PTPRA-201ENST00000216877 KRT28Q7Z3Y7 464 aa16.17■□□□□ 0.18
PTPRA-201ENST00000216877 SUDS3Q9H7L9 328 aaPredicted RBP16.17■□□□□ 0.18
PTPRA-201ENST00000216877 RGL1Q9NZL6 768 aa16.17■□□□□ 0.18
PTPRA-201ENST00000216877 DENND2AQ9ULE3 1009 aa16.17■□□□□ 0.18
PTPRA-201ENST00000216877 DPPA5A6NC42 116 aa16.16■□□□□ 0.18
PTPRA-201ENST00000216877 BTBD11A6QL63 1104 aa16.16■□□□□ 0.18
PTPRA-201ENST00000216877 HIP1RO75146 1068 aa16.16■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms