RNA–Protein interactions for RNA: ENST00000215793.12

SF3A1-201, Transcript of splicing factor 3a subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3A1, Length 5,143 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-201ENST00000215793 STAM2O75886 525 aa14.86□□□□□ -0.03
SF3A1-201ENST00000215793 RNF10Q8N5U6 811 aaKnown RBP14.86□□□□□ -0.03
SF3A1-201ENST00000215793 METTL13Q8N6R0 699 aa14.86□□□□□ -0.03
SF3A1-201ENST00000215793 GOLGA8HP0CJ92 632 aa14.86□□□□□ -0.03
SF3A1-201ENST00000215793 CNGA1P29973 690 aa14.86□□□□□ -0.03
SF3A1-201ENST00000215793 COPB1P53618 953 aaKnown RBP14.86□□□□□ -0.03
SF3A1-201ENST00000215793 CLNS1AP54105 237 aaKnown RBP14.86□□□□□ -0.03
SF3A1-201ENST00000215793 PABPC4Q13310 644 aaKnown RBP eCLIP14.86□□□□□ -0.039e-9■■□□□ 11.9
SF3A1-201ENST00000215793 DMP1Q13316 513 aaPredicted RBP14.86□□□□□ -0.03
SF3A1-201ENST00000215793 EXOC3L4Q17RC7 722 aa14.86□□□□□ -0.03
SF3A1-201ENST00000215793 AMNQ9BXJ7 453 aa14.86□□□□□ -0.03
SF3A1-201ENST00000215793 ZSCAN26Q16670 478 aa14.86□□□□□ -0.03
SF3A1-201ENST00000215793 SLC17A8Q8NDX2 589 aa14.86□□□□□ -0.03
SF3A1-201ENST00000215793 POLR3EQ9NVU0 708 aa14.86□□□□□ -0.03
SF3A1-201ENST00000215793 CD2APQ9Y5K6 639 aa14.86□□□□□ -0.03
SF3A1-201ENST00000215793 RNF8O76064 485 aa14.85□□□□□ -0.03
SF3A1-201ENST00000215793 EEF1GP26641 437 aaKnown RBP14.85□□□□□ -0.03
SF3A1-201ENST00000215793 GNGT1P63211 74 aa14.85□□□□□ -0.03
SF3A1-201ENST00000215793 DBNLQ9UJU6 430 aaKnown RBP14.85□□□□□ -0.03
SF3A1-201ENST00000215793 CAPN9O14815 690 aa14.85□□□□□ -0.03
SF3A1-201ENST00000215793 TMEM191BP0C7N4 346 aa14.85□□□□□ -0.03
SF3A1-201ENST00000215793 PHKA1P46020 1223 aa14.85□□□□□ -0.03
SF3A1-201ENST00000215793 IRX4P78413 519 aa14.85□□□□□ -0.03
SF3A1-201ENST00000215793 SH2D4BQ5SQS7 431 aa14.85□□□□□ -0.03
SF3A1-201ENST00000215793 APOA5Q6Q788 366 aa14.85□□□□□ -0.03
SF3A1-201ENST00000215793 TDRD7Q8NHU6 1098 aaKnown RBP14.85□□□□□ -0.03
SF3A1-201ENST00000215793 CLIC4Q9Y696 253 aa14.85□□□□□ -0.03
SF3A1-201ENST00000215793 ZNF804BA4D1E1 1349 aa14.85□□□□□ -0.03
SF3A1-201ENST00000215793 BUB1O43683 1085 aa14.85□□□□□ -0.03
SF3A1-201ENST00000215793 PPP2R5CQ13362 524 aa14.85□□□□□ -0.03
SF3A1-201ENST00000215793 KIAA0825Q8IV33 1275 aa14.85□□□□□ -0.03
SF3A1-201ENST00000215793 MGARPQ8TDB4 240 aa14.85□□□□□ -0.03
SF3A1-201ENST00000215793 NRBP2Q9NSY0 501 aa14.85□□□□□ -0.03
SF3A1-201ENST00000215793 RABGAP1Q9Y3P9 1069 aa14.85□□□□□ -0.03
SF3A1-201ENST00000215793 AATKQ6ZMQ8 1374 aa14.85□□□□□ -0.03
SF3A1-201ENST00000215793 APBA3O96018 575 aa14.85□□□□□ -0.03
SF3A1-201ENST00000215793 NSFP46459 744 aaKnown RBP14.85□□□□□ -0.03
SF3A1-201ENST00000215793 ASPRV1Q53RT3 343 aa14.85□□□□□ -0.03
SF3A1-201ENST00000215793 SCYL2Q6P3W7 929 aa14.85□□□□□ -0.03
SF3A1-201ENST00000215793 RETREG2Q8NC44 543 aa14.85□□□□□ -0.03
SF3A1-201ENST00000215793 CNKSR1Q969H4 720 aa14.85□□□□□ -0.03
SF3A1-201ENST00000215793 RUNDC3BQ96NL0 473 aa14.85□□□□□ -0.03
SF3A1-201ENST00000215793 TUBGCP2Q9BSJ2 902 aa14.85□□□□□ -0.03
SF3A1-201ENST00000215793 GREM2Q9H772 168 aa14.85□□□□□ -0.03
SF3A1-201ENST00000215793 BAIAP2L1Q9UHR4 511 aa14.85□□□□□ -0.03
SF3A1-201ENST00000215793 RPS6KA2Q15349 733 aa14.84□□□□□ -0.03
SF3A1-201ENST00000215793 PHLDB3Q6NSJ2 640 aa14.84□□□□□ -0.03
SF3A1-201ENST00000215793 DHTKD1Q96HY7 919 aaPredicted RBP14.84□□□□□ -0.03
SF3A1-201ENST00000215793 TMEM232C9JQI7 657 aa14.84□□□□□ -0.03
SF3A1-201ENST00000215793 KIF3CO14782 793 aa14.84□□□□□ -0.03
SF3A1-201ENST00000215793 ANKRD35Q8N283 1001 aa14.84□□□□□ -0.03
SF3A1-201ENST00000215793 FAM71BQ8TC56 605 aa14.84□□□□□ -0.03
SF3A1-201ENST00000215793 GPT2Q8TD30 523 aa14.84□□□□□ -0.03
SF3A1-201ENST00000215793 CCDC127Q96BQ5 260 aa14.84□□□□□ -0.03
SF3A1-201ENST00000215793 LEMD3Q9Y2U8 911 aa14.84□□□□□ -0.03
SF3A1-201ENST00000215793 IKBKBO14920 756 aa14.84□□□□□ -0.03
SF3A1-201ENST00000215793 THAP12O43422 761 aa14.84□□□□□ -0.03
SF3A1-201ENST00000215793 TMOD1P28289 359 aa14.84□□□□□ -0.03
SF3A1-201ENST00000215793 CCDC13Q8IYE1 715 aa14.84□□□□□ -0.03
SF3A1-201ENST00000215793 PASKQ96RG2 1323 aa14.84□□□□□ -0.03
SF3A1-201ENST00000215793 DLATP10515 647 aaKnown RBP14.84□□□□□ -0.03
SF3A1-201ENST00000215793 IL6STP40189 918 aaPredicted RBP14.84□□□□□ -0.03
SF3A1-201ENST00000215793 ARHGAP4P98171 946 aa14.84□□□□□ -0.03
SF3A1-201ENST00000215793 PTK2Q05397 1052 aa14.84□□□□□ -0.03
SF3A1-201ENST00000215793 PKP1Q13835 747 aa14.84□□□□□ -0.03
SF3A1-201ENST00000215793 ODR4Q5SWX8 454 aa14.84□□□□□ -0.03
SF3A1-201ENST00000215793 RABGGTAQ92696 567 aa14.84□□□□□ -0.03
SF3A1-201ENST00000215793 GCFC2P16383 781 aaKnown RBP14.83□□□□□ -0.03
SF3A1-201ENST00000215793 RASEFQ8IZ41 740 aa14.83□□□□□ -0.03
SF3A1-201ENST00000215793 LARP4BQ92615 738 aaKnown RBP14.83□□□□□ -0.03
SF3A1-201ENST00000215793 GJA10Q969M2 543 aa14.83□□□□□ -0.03
SF3A1-201ENST00000215793 CNOT6LQ96LI5 555 aaKnown RBP14.83□□□□□ -0.03
SF3A1-201ENST00000215793 PLEKHA4Q9H4M7 779 aa14.83□□□□□ -0.03
SF3A1-201ENST00000215793 CDC23Q9UJX2 597 aa14.83□□□□□ -0.03
SF3A1-201ENST00000215793 CYP21A2P08686 494 aa14.83□□□□□ -0.04
SF3A1-201ENST00000215793 LMNB1P20700 586 aa14.83□□□□□ -0.04
SF3A1-201ENST00000215793 CDC25BP30305 580 aa14.83□□□□□ -0.04
SF3A1-201ENST00000215793 ABCB5Q2M3G0 1257 aa14.83□□□□□ -0.04
SF3A1-201ENST00000215793 MAP7D3Q8IWC1 876 aa14.83□□□□□ -0.04
SF3A1-201ENST00000215793 PAGR1Q9BTK6 254 aa14.83□□□□□ -0.04
SF3A1-201ENST00000215793 MYL1P05976 194 aa14.83□□□□□ -0.04
SF3A1-201ENST00000215793 VPS41P49754 854 aa14.83□□□□□ -0.04
SF3A1-201ENST00000215793 LMNB2Q03252 620 aa14.83□□□□□ -0.04
SF3A1-201ENST00000215793 BFSP1Q12934 665 aa14.83□□□□□ -0.04
SF3A1-201ENST00000215793 MMS19Q96T76 1030 aa14.83□□□□□ -0.04
SF3A1-201ENST00000215793 DPH5Q9H2P9 285 aa14.83□□□□□ -0.04
SF3A1-201ENST00000215793 XDHP47989 1333 aa14.83□□□□□ -0.04
SF3A1-201ENST00000215793 ATF2P15336 505 aa14.83□□□□□ -0.04
SF3A1-201ENST00000215793 CUL4BQ13620 913 aa14.83□□□□□ -0.04
SF3A1-201ENST00000215793 NLGN1Q8N2Q7 840 aa14.83□□□□□ -0.04
SF3A1-201ENST00000215793 CPSF2Q9P2I0 782 aaKnown RBP14.83□□□□□ -0.04
SF3A1-201ENST00000215793 KIAA1024Q9UPX6 916 aa14.83□□□□□ -0.04
SF3A1-201ENST00000215793 LOC102724428A0A0B4J2F2 783 aa14.82□□□□□ -0.04
SF3A1-201ENST00000215793 hCG_1984214I3L0E3 225 aa14.82□□□□□ -0.04
SF3A1-201ENST00000215793 MYO1FO00160 1098 aa14.82□□□□□ -0.04
SF3A1-201ENST00000215793 TXNDC9O14530 226 aa14.82□□□□□ -0.04
SF3A1-201ENST00000215793 FMNL1O95466 1100 aaPredicted RBP14.82□□□□□ -0.04
SF3A1-201ENST00000215793 BAG6P46379 1132 aa14.82□□□□□ -0.04
SF3A1-201ENST00000215793 SCNN1DP51172 638 aa14.82□□□□□ -0.04
SF3A1-201ENST00000215793 POLGP54098 1239 aaPredicted RBP14.82□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms