RNA–Protein interactions for RNA: ENST00000640499.1

VEGFA-231, Transcript of vascular endothelial growth factor A, human

APPRIS P3 TSL 1 (best) BASIC

Gene VEGFA, Length 1,188 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VEGFA-231	ENST00000640499	CTDP1	Q9Y5B0	961 aa	Predicted RBP	31.22	■■■□□ 2.59
VEGFA-231	ENST00000640499	ERICH2	A1L162	156 aa		31.21	■■■□□ 2.59
VEGFA-231	ENST00000640499	POTEF	A5A3E0	1075 aa		31.21	■■■□□ 2.59
VEGFA-231	ENST00000640499	PALM3	A6NDB9	673 aa	Predicted RBP	31.21	■■■□□ 2.59
VEGFA-231	ENST00000640499	PARP1	P09874	1014 aa	Known RBP	31.21	■■■□□ 2.59
VEGFA-231	ENST00000640499	FCER1A	P12319	257 aa		31.21	■■■□□ 2.59
VEGFA-231	ENST00000640499	COPB2	P35606	906 aa		31.21	■■■□□ 2.59
VEGFA-231	ENST00000640499	ASPRV1	Q53RT3	343 aa		31.21	■■■□□ 2.59
VEGFA-231	ENST00000640499	DHX30	Q7L2E3	1194 aa	Known RBP eCLIP	31.21	■■■□□ 2.59	5e-6	■□□□□ 9.9
VEGFA-231	ENST00000640499	TMEM87B	Q96K49	555 aa		31.21	■■■□□ 2.59
VEGFA-231	ENST00000640499	MMP19	Q99542	508 aa		31.21	■■■□□ 2.59
VEGFA-231	ENST00000640499	EPB41L2	O43491	1005 aa	Known RBP	31.2	■■■□□ 2.59
VEGFA-231	ENST00000640499	ZKSCAN1	P17029	563 aa	Predicted RBP	31.2	■■■□□ 2.59
VEGFA-231	ENST00000640499	GRM4	Q14833	912 aa		31.2	■■■□□ 2.59
VEGFA-231	ENST00000640499	TCEANC2	Q96MN5	208 aa		31.2	■■■□□ 2.59
VEGFA-231	ENST00000640499	UNC93B1	Q9H1C4	597 aa		31.2	■■■□□ 2.59
VEGFA-231	ENST00000640499	BIN2	Q9UBW5	565 aa	Predicted RBP	31.2	■■■□□ 2.59
VEGFA-231	ENST00000640499	KIAA0100	Q14667	2235 aa	Known RBP	31.2	■■■□□ 2.58
VEGFA-231	ENST00000640499	HMGCR	P04035	888 aa		31.19	■■■□□ 2.58
VEGFA-231	ENST00000640499	PGK2	P07205	417 aa		31.19	■■■□□ 2.58
VEGFA-231	ENST00000640499	CPA1	P15085	419 aa		31.19	■■■□□ 2.58
VEGFA-231	ENST00000640499	DHX32	Q7L7V1	743 aa	Known RBP	31.19	■■■□□ 2.58
VEGFA-231	ENST00000640499	RBBP6	Q7Z6E9	1792 aa	Known RBP	31.18	■■■□□ 2.58
VEGFA-231	ENST00000640499	ICAM1	P05362	532 aa		31.18	■■■□□ 2.58
VEGFA-231	ENST00000640499	CCL5	P13501	91 aa		31.18	■■■□□ 2.58
VEGFA-231	ENST00000640499	LIFR	P42702	1097 aa		31.18	■■■□□ 2.58
VEGFA-231	ENST00000640499	KRT32	Q14532	448 aa		31.18	■■■□□ 2.58
VEGFA-231	ENST00000640499	MAP3K21	Q5TCX8	1036 aa		31.18	■■■□□ 2.58
VEGFA-231	ENST00000640499	DPP9	Q86TI2	863 aa		31.18	■■■□□ 2.58
VEGFA-231	ENST00000640499	ADGRF4	Q8IZF3	695 aa		31.18	■■■□□ 2.58
VEGFA-231	ENST00000640499	CHST13	Q8NET6	341 aa		31.18	■■■□□ 2.58
VEGFA-231	ENST00000640499	HOMER2	Q9NSB8	354 aa		31.18	■■■□□ 2.58
VEGFA-231	ENST00000640499	DNAJC25-GNG10	A0A024R161	153 aa		31.17	■■■□□ 2.58
VEGFA-231	ENST00000640499	UBXN2A	P68543	259 aa		31.17	■■■□□ 2.58
VEGFA-231	ENST00000640499	ZNF792	Q3KQV3	632 aa		31.17	■■■□□ 2.58
VEGFA-231	ENST00000640499	MUM1L1	Q5H9M0	696 aa		31.17	■■■□□ 2.58
VEGFA-231	ENST00000640499	MYL10	Q9BUA6	226 aa		31.17	■■■□□ 2.58
VEGFA-231	ENST00000640499	KLRF2	D3W0D1	207 aa		31.16	■■■□□ 2.58
VEGFA-231	ENST00000640499	ALAS1	P13196	640 aa		31.16	■■■□□ 2.58
VEGFA-231	ENST00000640499	KCTD2	Q14681	263 aa		31.16	■■■□□ 2.58
VEGFA-231	ENST00000640499	ZNF654	Q8IZM8	581 aa		31.16	■■■□□ 2.58
VEGFA-231	ENST00000640499	TRERF1	Q96PN7	1200 aa		31.16	■■■□□ 2.58
VEGFA-231	ENST00000640499	JMJD4	Q9H9V9	463 aa		31.16	■■■□□ 2.58
VEGFA-231	ENST00000640499	RNF146	Q9NTX7	359 aa		31.16	■■■□□ 2.58
VEGFA-231	ENST00000640499	CCPG1	Q9ULG6	757 aa		31.16	■■■□□ 2.58
VEGFA-231	ENST00000640499	WDR19	Q8NEZ3	1342 aa		31.16	■■■□□ 2.58
VEGFA-231	ENST00000640499	SEC24B	O95487	1268 aa		31.15	■■■□□ 2.58
VEGFA-231	ENST00000640499	CACNB2	Q08289	660 aa	Predicted RBP	31.15	■■■□□ 2.58
VEGFA-231	ENST00000640499	TKFC	Q3LXA3	575 aa		31.15	■■■□□ 2.58
VEGFA-231	ENST00000640499	CATIP	Q7Z7H3	387 aa		31.15	■■■□□ 2.58
VEGFA-231	ENST00000640499	TRMT44	Q8IYL2	757 aa	Known RBP	31.15	■■■□□ 2.58
VEGFA-231	ENST00000640499	PLXNA1	Q9UIW2	1896 aa		31.14	■■■□□ 2.58
VEGFA-231	ENST00000640499	RGS19	P49795	217 aa		31.14	■■■□□ 2.58
VEGFA-231	ENST00000640499	SGMS1	Q86VZ5	419 aa		31.14	■■■□□ 2.58
VEGFA-231	ENST00000640499	TMTC2	Q8N394	836 aa		31.14	■■■□□ 2.58
VEGFA-231	ENST00000640499	MTMR8	Q96EF0	704 aa		31.14	■■■□□ 2.58
VEGFA-231	ENST00000640499	MAML3	Q96JK9	1138 aa		31.14	■■■□□ 2.58
VEGFA-231	ENST00000640499	FGD4	Q96M96	766 aa		31.14	■■■□□ 2.58
VEGFA-231	ENST00000640499	JAKMIP1	Q96N16	626 aa	Known RBP	31.14	■■■□□ 2.58
VEGFA-231	ENST00000640499	RNF208	Q9H0X6	261 aa		31.14	■■■□□ 2.58
VEGFA-231	ENST00000640499	VAT1L	Q9HCJ6	419 aa		31.14	■■■□□ 2.58
VEGFA-231	ENST00000640499	CYTH3	O43739	400 aa		31.13	■■■□□ 2.57
VEGFA-231	ENST00000640499	PRKAR2A	P13861	404 aa	Known RBP	31.13	■■■□□ 2.57
VEGFA-231	ENST00000640499	EN2	P19622	333 aa	Predicted RBP	31.13	■■■□□ 2.57
VEGFA-231	ENST00000640499	OLFML2B	Q68BL8	750 aa		31.13	■■■□□ 2.57
VEGFA-231	ENST00000640499	CLEC4D	Q8WXI8	215 aa		31.13	■■■□□ 2.57
VEGFA-231	ENST00000640499	ACAD9	Q9H845	621 aa		31.13	■■■□□ 2.57
VEGFA-231	ENST00000640499	A1CF	Q9NQ94	594 aa	Known RBP	31.13	■■■□□ 2.57
VEGFA-231	ENST00000640499	PAK6	Q9NQU5	681 aa	Predicted RBP	31.13	■■■□□ 2.57
VEGFA-231	ENST00000640499	FBXO40	Q9UH90	709 aa		31.13	■■■□□ 2.57
VEGFA-231	ENST00000640499	CYP2C19	P33261	490 aa		31.12	■■■□□ 2.57
VEGFA-231	ENST00000640499	CDC37	Q16543	378 aa	Predicted RBP	31.12	■■■□□ 2.57
VEGFA-231	ENST00000640499	TRPV1	Q8NER1	839 aa		31.12	■■■□□ 2.57
VEGFA-231	ENST00000640499	NUP133	Q8WUM0	1156 aa		31.12	■■■□□ 2.57
VEGFA-231	ENST00000640499	MAP3K14	Q99558	947 aa		31.12	■■■□□ 2.57
VEGFA-231	ENST00000640499	BRPF3	Q9ULD4	1205 aa		31.12	■■■□□ 2.57
VEGFA-231	ENST00000640499	DIS3	Q9Y2L1	958 aa	Known RBP	31.12	■■■□□ 2.57
VEGFA-231	ENST00000640499	DDAH1	O94760	285 aa		31.11	■■■□□ 2.57
VEGFA-231	ENST00000640499	RXRA	P19793	462 aa		31.11	■■■□□ 2.57
VEGFA-231	ENST00000640499	QRICH1	Q2TAL8	776 aa		31.11	■■■□□ 2.57
VEGFA-231	ENST00000640499	RAB11FIP4	Q86YS3	637 aa		31.11	■■■□□ 2.57
VEGFA-231	ENST00000640499	TMEM106C	Q9BVX2	250 aa		31.11	■■■□□ 2.57
VEGFA-231	ENST00000640499	RIOX1	Q9H6W3	641 aa		31.11	■■■□□ 2.57
VEGFA-231	ENST00000640499	BAZ2B	Q9UIF8	2168 aa	Known RBP	31.11	■■■□□ 2.57
VEGFA-231	ENST00000640499	RPTOR	Q8N122	1335 aa		31.1	■■■□□ 2.57
VEGFA-231	ENST00000640499	GJB1	P08034	283 aa		31.1	■■■□□ 2.57
VEGFA-231	ENST00000640499	HMGB1	P09429	215 aa	Known RBP	31.1	■■■□□ 2.57
VEGFA-231	ENST00000640499	CCND3	P30281	292 aa	Predicted RBP	31.1	■■■□□ 2.57
VEGFA-231	ENST00000640499	NFXL1	Q6ZNB6	911 aa		31.1	■■■□□ 2.57
VEGFA-231	ENST00000640499	ANKRD35	Q8N283	1001 aa		31.1	■■■□□ 2.57
VEGFA-231	ENST00000640499	SHISA4	Q96DD7	197 aa		31.1	■■■□□ 2.57
VEGFA-231	ENST00000640499	DDX11	Q96FC9	970 aa		31.1	■■■□□ 2.57
VEGFA-231	ENST00000640499	XRN2	Q9H0D6	950 aa	Known RBP eCLIP	31.1	■■■□□ 2.57	3e-7	■■■■□ 25.4
VEGFA-231	ENST00000640499	CCDC69	A6NI79	296 aa		31.09	■■■□□ 2.57
VEGFA-231	ENST00000640499	NFIB	O00712	420 aa		31.09	■■■□□ 2.57
VEGFA-231	ENST00000640499	PPP1R11	O60927	126 aa	Predicted RBP	31.09	■■■□□ 2.57
VEGFA-231	ENST00000640499	CNTN2	Q02246	1040 aa		31.09	■■■□□ 2.57
VEGFA-231	ENST00000640499	FAM133A	Q8N9E0	248 aa		31.09	■■■□□ 2.57
VEGFA-231	ENST00000640499	LCT	P09848	1927 aa		31.08	■■■□□ 2.57
VEGFA-231	ENST00000640499	HMX1	Q9NP08	348 aa	Predicted RBP	31.08	■■■□□ 2.57

Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms