RNA–Protein interactions for RNA: ENST00000631023.2

CLN3-240, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-240ENST00000631023 TRIB2Q92519 343 aa24.19■■□□□ 1.46
CLN3-240ENST00000631023 HMGB1P09429 215 aaKnown RBP24.18■■□□□ 1.46
CLN3-240ENST00000631023 EIF5BO60841 1220 aaKnown RBP24.17■■□□□ 1.46
CLN3-240ENST00000631023 SNAP25P60880 206 aa24.17■■□□□ 1.46
CLN3-240ENST00000631023 MTFR1Q15390 333 aa24.17■■□□□ 1.46
CLN3-240ENST00000631023 KCNB2Q92953 911 aa24.17■■□□□ 1.46
CLN3-240ENST00000631023 AGBL1Q96MI9 1066 aa24.17■■□□□ 1.46
CLN3-240ENST00000631023 RNF208Q9H0X6 261 aa24.17■■□□□ 1.46
CLN3-240ENST00000631023 ZNF536O15090 1300 aa24.17■■□□□ 1.46
CLN3-240ENST00000631023 ICAM1P05362 532 aa24.16■■□□□ 1.46
CLN3-240ENST00000631023 CCL5P13501 91 aa24.16■■□□□ 1.46
CLN3-240ENST00000631023 MFSD14CQ5VZR4 134 aa24.16■■□□□ 1.46
CLN3-240ENST00000631023 DDX11Q96FC9 970 aa24.16■■□□□ 1.46
CLN3-240ENST00000631023 UBA5Q9GZZ9 404 aa24.16■■□□□ 1.46
CLN3-240ENST00000631023 LY9Q9HBG7 655 aa24.16■■□□□ 1.46
CLN3-240ENST00000631023 CCPG1Q9ULG6 757 aa24.16■■□□□ 1.46
CLN3-240ENST00000631023 WDR19Q8NEZ3 1342 aa24.16■■□□□ 1.46
CLN3-240ENST00000631023 COBLO75128 1261 aa24.16■■□□□ 1.46
CLN3-240ENST00000631023 ALAS1P13196 640 aa24.16■■□□□ 1.46
CLN3-240ENST00000631023 LIFRP42702 1097 aa24.16■■□□□ 1.46
CLN3-240ENST00000631023 CCL14Q16627 93 aa24.16■■□□□ 1.46
CLN3-240ENST00000631023 NFXL1Q6ZNB6 911 aa24.16■■□□□ 1.46
CLN3-240ENST00000631023 DHX32Q7L7V1 743 aaKnown RBP24.16■■□□□ 1.46
CLN3-240ENST00000631023 NPLOC4Q8TAT6 608 aa24.16■■□□□ 1.46
CLN3-240ENST00000631023 TRERF1Q96PN7 1200 aa24.16■■□□□ 1.46
CLN3-240ENST00000631023 ACAD9Q9H845 621 aa24.16■■□□□ 1.46
CLN3-240ENST00000631023 SENP2Q9HC62 589 aa24.16■■□□□ 1.46
CLN3-240ENST00000631023 HOMER2Q9NSB8 354 aa24.16■■□□□ 1.46
CLN3-240ENST00000631023 CCDC69A6NI79 296 aa24.15■■□□□ 1.46
CLN3-240ENST00000631023 SH2B2O14492 632 aaPredicted RBP24.15■■□□□ 1.46
CLN3-240ENST00000631023 DHX16O60231 1041 aaKnown RBP24.15■■□□□ 1.46
CLN3-240ENST00000631023 ADCK5Q3MIX3 580 aa24.15■■□□□ 1.46
CLN3-240ENST00000631023 DHX30Q7L2E3 1194 aaKnown RBP eCLIP24.15■■□□□ 1.46
CLN3-240ENST00000631023 ANKRD35Q8N283 1001 aa24.15■■□□□ 1.46
CLN3-240ENST00000631023 RNF146Q9NTX7 359 aa24.15■■□□□ 1.46
CLN3-240ENST00000631023 KLRF2D3W0D1 207 aa24.14■■□□□ 1.45
CLN3-240ENST00000631023 TROAPQ12815 778 aa24.14■■□□□ 1.45
CLN3-240ENST00000631023 GRM4Q14833 912 aa24.14■■□□□ 1.45
CLN3-240ENST00000631023 OLFML2BQ68BL8 750 aa24.14■■□□□ 1.45
CLN3-240ENST00000631023 ADGRF4Q8IZF3 695 aa24.14■■□□□ 1.45
CLN3-240ENST00000631023 USP26Q9BXU7 913 aa24.14■■□□□ 1.45
CLN3-240ENST00000631023 UNC93B1Q9H1C4 597 aa24.14■■□□□ 1.45
CLN3-240ENST00000631023 MAD2L2Q9UI95 211 aa24.14■■□□□ 1.45
CLN3-240ENST00000631023 DIS3Q9Y2L1 958 aaKnown RBP24.14■■□□□ 1.45
CLN3-240ENST00000631023 RPTORQ8N122 1335 aa24.13■■□□□ 1.45
CLN3-240ENST00000631023 PALM3A6NDB9 673 aaPredicted RBP24.13■■□□□ 1.45
CLN3-240ENST00000631023 DDAH1O94760 285 aa24.13■■□□□ 1.45
CLN3-240ENST00000631023 ZNF654Q8IZM8 581 aa24.13■■□□□ 1.45
CLN3-240ENST00000631023 NUP133Q8WUM0 1156 aa24.13■■□□□ 1.45
CLN3-240ENST00000631023 MAP3K14Q99558 947 aa24.13■■□□□ 1.45
CLN3-240ENST00000631023 CPVLQ9H3G5 476 aa24.13■■□□□ 1.45
CLN3-240ENST00000631023 HMX1Q9NP08 348 aaPredicted RBP24.13■■□□□ 1.45
CLN3-240ENST00000631023 SNX14Q9Y5W7 946 aa24.13■■□□□ 1.45
CLN3-240ENST00000631023 PGK2P07205 417 aa24.12■■□□□ 1.45
CLN3-240ENST00000631023 GJB1P08034 283 aa24.12■■□□□ 1.45
CLN3-240ENST00000631023 PRKAR2AP13861 404 aaKnown RBP24.12■■□□□ 1.45
CLN3-240ENST00000631023 PSMA5P28066 241 aa24.12■■□□□ 1.45
CLN3-240ENST00000631023 EXOSC10Q01780 885 aaKnown RBP24.12■■□□□ 1.45
CLN3-240ENST00000631023 STAG2Q8N3U4 1231 aa24.12■■□□□ 1.45
CLN3-240ENST00000631023 GPHNQ9NQX3 736 aaPredicted RBP24.12■■□□□ 1.45
CLN3-240ENST00000631023 POTEFA5A3E0 1075 aa24.12■■□□□ 1.45
CLN3-240ENST00000631023 KIF5BP33176 963 aa24.12■■□□□ 1.45
CLN3-240ENST00000631023 TRIM32Q13049 653 aa24.12■■□□□ 1.45
CLN3-240ENST00000631023 COL9A3Q14050 684 aaPredicted RBP24.12■■□□□ 1.45
CLN3-240ENST00000631023 MAP3K21Q5TCX8 1036 aa24.12■■□□□ 1.45
CLN3-240ENST00000631023 MAML3Q96JK9 1138 aa24.12■■□□□ 1.45
CLN3-240ENST00000631023 JAKMIP1Q96N16 626 aaKnown RBP24.12■■□□□ 1.45
CLN3-240ENST00000631023 LRRC2Q9BYS8 371 aa24.12■■□□□ 1.45
CLN3-240ENST00000631023 VAT1LQ9HCJ6 419 aa24.12■■□□□ 1.45
CLN3-240ENST00000631023 FLRT1Q9NZU1 646 aa24.12■■□□□ 1.45
CLN3-240ENST00000631023 SLC12A7Q9Y666 1083 aa24.12■■□□□ 1.45
CLN3-240ENST00000631023 MCM3APO60318 1980 aa24.11■■□□□ 1.45
CLN3-240ENST00000631023 PFASO15067 1338 aa24.11■■□□□ 1.45
CLN3-240ENST00000631023 CALM1P0DP23 149 aa24.11■■□□□ 1.45
CLN3-240ENST00000631023 CALM2P0DP24 149 aa24.11■■□□□ 1.45
CLN3-240ENST00000631023 CALM3P0DP25 149 aa24.11■■□□□ 1.45
CLN3-240ENST00000631023 RGS19P49795 217 aa24.11■■□□□ 1.45
CLN3-240ENST00000631023 CACNB2Q08289 660 aaPredicted RBP24.11■■□□□ 1.45
CLN3-240ENST00000631023 CDC37Q16543 378 aaPredicted RBP24.11■■□□□ 1.45
CLN3-240ENST00000631023 ZNF792Q3KQV3 632 aa24.11■■□□□ 1.45
CLN3-240ENST00000631023 SYNE3Q6ZMZ3 975 aa24.11■■□□□ 1.45
CLN3-240ENST00000631023 SGMS1Q86VZ5 419 aa24.11■■□□□ 1.45
CLN3-240ENST00000631023 CTCFLQ8NI51 663 aaPredicted RBP24.11■■□□□ 1.45
CLN3-240ENST00000631023 XRN2Q9H0D6 950 aaKnown RBP eCLIP24.11■■□□□ 1.45
CLN3-240ENST00000631023 BRCA2P51587 3418 aa24.1■■□□□ 1.45
CLN3-240ENST00000631023 DNAJC25-GNG10A0A024R161 153 aa24.1■■□□□ 1.45
CLN3-240ENST00000631023 BLOC1S2Q6QNY1 142 aa24.1■■□□□ 1.45
CLN3-240ENST00000631023 JMJD4Q9H9V9 463 aa24.1■■□□□ 1.45
CLN3-240ENST00000631023 CAPN2P17655 700 aa24.09■■□□□ 1.45
CLN3-240ENST00000631023 FGD1P98174 961 aa24.09■■□□□ 1.45
CLN3-240ENST00000631023 PAK6Q9NQU5 681 aaPredicted RBP24.09■■□□□ 1.45
CLN3-240ENST00000631023 EN2P19622 333 aaPredicted RBP24.08■■□□□ 1.45
CLN3-240ENST00000631023 CYP2C19P33261 490 aa24.08■■□□□ 1.45
CLN3-240ENST00000631023 GJA8P48165 433 aa24.08■■□□□ 1.45
CLN3-240ENST00000631023 GNAQP50148 359 aa24.08■■□□□ 1.45
CLN3-240ENST00000631023 MUM1L1Q5H9M0 696 aa24.08■■□□□ 1.45
CLN3-240ENST00000631023 TCEANC2Q96MN5 208 aa24.08■■□□□ 1.45
CLN3-240ENST00000631023 A1CFQ9NQ94 594 aaKnown RBP24.08■■□□□ 1.45
CLN3-240ENST00000631023 POTEB2H3BUK9 544 aa24.08■■□□□ 1.44
CLN3-240ENST00000631023 SGPL1O95470 568 aa24.08■■□□□ 1.44
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms