RNA–Protein interactions for RNA: ENST00000619079.1

UPF3A-212, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 2,423 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-212ENST00000619079 PHKBQ93100 1093 aa12.08□□□□□ -0.48
UPF3A-212ENST00000619079 DNAJC7Q99615 494 aa12.08□□□□□ -0.48
UPF3A-212ENST00000619079 CD248Q9HCU0 757 aa12.08□□□□□ -0.48
UPF3A-212ENST00000619079 NIP7Q9Y221 180 aaKnown RBP eCLIP12.08□□□□□ -0.48
UPF3A-212ENST00000619079 LUC7L2Q9Y383 392 aaKnown RBP12.08□□□□□ -0.48
UPF3A-212ENST00000619079 UBN2Q6ZU65 1347 aa12.08□□□□□ -0.48
UPF3A-212ENST00000619079 PPP1R3GB7ZBB8 358 aa12.07□□□□□ -0.48
UPF3A-212ENST00000619079 SRGAP2O75044 1071 aa12.07□□□□□ -0.48
UPF3A-212ENST00000619079 CD44P16070 742 aaKnown RBP12.07□□□□□ -0.48
UPF3A-212ENST00000619079 LSP1P33241 339 aa12.07□□□□□ -0.48
UPF3A-212ENST00000619079 SNCBQ16143 134 aa12.07□□□□□ -0.48
UPF3A-212ENST00000619079 CLEC4GQ6UXB4 293 aa12.07□□□□□ -0.48
UPF3A-212ENST00000619079 GIGYF2Q6Y7W6 1299 aaKnown RBP12.07□□□□□ -0.48
UPF3A-212ENST00000619079 SH3RF1Q7Z6J0 888 aa12.07□□□□□ -0.48
UPF3A-212ENST00000619079 SETDB2Q96T68 719 aa12.07□□□□□ -0.48
UPF3A-212ENST00000619079 TSGA10Q9BZW7 698 aa12.07□□□□□ -0.48
UPF3A-212ENST00000619079 RABEP2Q9H5N1 569 aa12.07□□□□□ -0.48
UPF3A-212ENST00000619079 AATFQ9NY61 560 aaKnown RBP eCLIP12.07□□□□□ -0.48
UPF3A-212ENST00000619079 BCCIPQ9P287 314 aaKnown RBP eCLIP12.07□□□□□ -0.48
UPF3A-212ENST00000619079 TRIM10Q9UDY6 481 aa12.07□□□□□ -0.48
UPF3A-212ENST00000619079 RWDD2AQ9UIY3 292 aa12.07□□□□□ -0.48
UPF3A-212ENST00000619079 GOLGA8AA7E2F4 631 aa12.07□□□□□ -0.48
UPF3A-212ENST00000619079 FOXP2O15409 715 aa12.07□□□□□ -0.48
UPF3A-212ENST00000619079 MYH8P13535 1937 aa12.07□□□□□ -0.48
UPF3A-212ENST00000619079 IDEP14735 1019 aa12.07□□□□□ -0.48
UPF3A-212ENST00000619079 SCP2P22307 547 aa12.07□□□□□ -0.48
UPF3A-212ENST00000619079 POLD1P28340 1107 aa12.07□□□□□ -0.48
UPF3A-212ENST00000619079 TOB1P50616 345 aaPredicted RBP12.07□□□□□ -0.48
UPF3A-212ENST00000619079 TTF1Q15361 905 aaPredicted RBP12.07□□□□□ -0.48
UPF3A-212ENST00000619079 NTRK3Q16288 839 aa12.07□□□□□ -0.48
UPF3A-212ENST00000619079 HSP90AB3PQ58FF7 597 aa12.07□□□□□ -0.48
UPF3A-212ENST00000619079 TTMPQ5BVD1 217 aa12.07□□□□□ -0.48
UPF3A-212ENST00000619079 TBC1D9BQ66K14 1250 aa12.07□□□□□ -0.48
UPF3A-212ENST00000619079 DIS3L2Q8IYB7 885 aaKnown RBP12.07□□□□□ -0.48
UPF3A-212ENST00000619079 CCDC13Q8IYE1 715 aa12.07□□□□□ -0.48
UPF3A-212ENST00000619079 C3orf20Q8ND61 904 aa12.07□□□□□ -0.48
UPF3A-212ENST00000619079 C1orf131Q8NDD1 294 aaKnown RBP12.07□□□□□ -0.48
UPF3A-212ENST00000619079 APPBP2Q92624 585 aa12.07□□□□□ -0.48
UPF3A-212ENST00000619079 JADE2Q9NQC1 790 aa12.07□□□□□ -0.48
UPF3A-212ENST00000619079 A0A1W2PQC6 194 aa12.06□□□□□ -0.48
UPF3A-212ENST00000619079 ATP5J2-PTCD1G3V325 749 aa12.06□□□□□ -0.48
UPF3A-212ENST00000619079 PPP1R37O75864 691 aa12.06□□□□□ -0.48
UPF3A-212ENST00000619079 FMNL1O95466 1100 aaPredicted RBP12.06□□□□□ -0.48
UPF3A-212ENST00000619079 MMP10P09238 476 aa12.06□□□□□ -0.48
UPF3A-212ENST00000619079 PRLRP16471 622 aa12.06□□□□□ -0.48
UPF3A-212ENST00000619079 SLC8A1P32418 973 aa12.06□□□□□ -0.48
UPF3A-212ENST00000619079 HERVK_113P62684 666 aa12.06□□□□□ -0.48
UPF3A-212ENST00000619079 GRIN1Q05586 938 aa12.06□□□□□ -0.48
UPF3A-212ENST00000619079 IFFO1Q0D2I5 559 aa12.06□□□□□ -0.48
UPF3A-212ENST00000619079 DPYDQ12882 1025 aa12.06□□□□□ -0.48
UPF3A-212ENST00000619079 TCP11X2Q5H9J9 407 aa12.06□□□□□ -0.48
UPF3A-212ENST00000619079 RNF187Q5TA31 235 aaPredicted RBP12.06□□□□□ -0.48
UPF3A-212ENST00000619079 TAX1BP1Q86VP1 789 aa12.06□□□□□ -0.48
UPF3A-212ENST00000619079 MICU3Q86XE3 530 aa12.06□□□□□ -0.48
UPF3A-212ENST00000619079 ZNF473Q8WTR7 871 aaKnown RBP12.06□□□□□ -0.48
UPF3A-212ENST00000619079 AIDAQ96BJ3 306 aa12.06□□□□□ -0.48
UPF3A-212ENST00000619079 PAGE5Q96GU1 130 aa12.06□□□□□ -0.48
UPF3A-212ENST00000619079 CHP1Q99653 195 aa12.06□□□□□ -0.48
UPF3A-212ENST00000619079 SEC31BQ9NQW1 1179 aa12.06□□□□□ -0.48
UPF3A-212ENST00000619079 CTNND2Q9UQB3 1225 aa12.06□□□□□ -0.48
UPF3A-212ENST00000619079 ABCC12Q96J65 1359 aa12.06□□□□□ -0.48
UPF3A-212ENST00000619079 BMP15O95972 392 aa12.06□□□□□ -0.48
UPF3A-212ENST00000619079 KCNA4P22459 653 aa12.06□□□□□ -0.48
UPF3A-212ENST00000619079 IRX1P78414 480 aaPredicted RBP12.06□□□□□ -0.48
UPF3A-212ENST00000619079 C2orf54Q08AI8 447 aa12.06□□□□□ -0.48
UPF3A-212ENST00000619079 PPP2R5AQ15172 486 aa12.06□□□□□ -0.48
UPF3A-212ENST00000619079 SGMS1Q86VZ5 419 aa12.06□□□□□ -0.48
UPF3A-212ENST00000619079 TRIM22Q8IYM9 498 aa12.06□□□□□ -0.48
UPF3A-212ENST00000619079 CCDC170Q8IYT3 715 aa12.06□□□□□ -0.48
UPF3A-212ENST00000619079 CSRNP2Q9H175 543 aa12.06□□□□□ -0.48
UPF3A-212ENST00000619079 ZNHIT6Q9NWK9 470 aaKnown RBP12.06□□□□□ -0.48
UPF3A-212ENST00000619079 STIM2Q9P246 746 aa12.06□□□□□ -0.48
UPF3A-212ENST00000619079 MYO5AQ9Y4I1 1855 aaKnown RBP12.06□□□□□ -0.48
UPF3A-212ENST00000619079 BTBD18B2RXH4 712 aa12.05□□□□□ -0.48
UPF3A-212ENST00000619079 KCNJ18B7U540 433 aa12.05□□□□□ -0.48
UPF3A-212ENST00000619079 FAM107AO95990 144 aa12.05□□□□□ -0.48
UPF3A-212ENST00000619079 VAV2P52735 878 aa12.05□□□□□ -0.48
UPF3A-212ENST00000619079 UBXN1Q04323 297 aa12.05□□□□□ -0.48
UPF3A-212ENST00000619079 PAK1Q13153 545 aa12.05□□□□□ -0.48
UPF3A-212ENST00000619079 KCNJ12Q14500 433 aa12.05□□□□□ -0.48
UPF3A-212ENST00000619079 NFIXQ14938 502 aa12.05□□□□□ -0.48
UPF3A-212ENST00000619079 PTGISQ16647 500 aa12.05□□□□□ -0.48
UPF3A-212ENST00000619079 GLE1Q53GS7 698 aaKnown RBP12.05□□□□□ -0.48
UPF3A-212ENST00000619079 TTC19Q6DKK2 380 aaPredicted RBP12.05□□□□□ -0.48
UPF3A-212ENST00000619079 NFXL1Q6ZNB6 911 aa12.05□□□□□ -0.48
UPF3A-212ENST00000619079 PPP1R3FQ6ZSY5 799 aaPredicted RBP12.05□□□□□ -0.48
UPF3A-212ENST00000619079 ATG9AQ7Z3C6 839 aa12.05□□□□□ -0.48
UPF3A-212ENST00000619079 TRIM58Q8NG06 486 aa12.05□□□□□ -0.48
UPF3A-212ENST00000619079 PYM1Q9BRP8 204 aaKnown RBP12.05□□□□□ -0.48
UPF3A-212ENST00000619079 SLC26A6Q9BXS9 759 aa12.05□□□□□ -0.48
UPF3A-212ENST00000619079 VPS16Q9H269 839 aa12.05□□□□□ -0.48
UPF3A-212ENST00000619079 SPON1Q9HCB6 807 aa12.05□□□□□ -0.48
UPF3A-212ENST00000619079 SLC40A1Q9NP59 571 aa12.05□□□□□ -0.48
UPF3A-212ENST00000619079 SNX12Q9UMY4 172 aa12.05□□□□□ -0.48
UPF3A-212ENST00000619079 ECM29Q5VYK3 1845 aa12.05□□□□□ -0.48
UPF3A-212ENST00000619079 RNF225M0QZC1 329 aaPredicted RBP12.05□□□□□ -0.48
UPF3A-212ENST00000619079 PDE2AO00408 941 aaPredicted RBP12.05□□□□□ -0.48
UPF3A-212ENST00000619079 RANBP6O60518 1105 aaKnown RBP12.05□□□□□ -0.48
UPF3A-212ENST00000619079 IFNAR1P17181 557 aa12.05□□□□□ -0.48
UPF3A-212ENST00000619079 AFMP43652 599 aa12.05□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 58.4 ms