RNA–Protein interactions for RNA: ENST00000611852.4

CCDC28A-202, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,505 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-202ENST00000611852 PTPREP23469 700 aa19.28■□□□□ 0.68
CCDC28A-202ENST00000611852 MORN1Q5T089 497 aa19.28■□□□□ 0.68
CCDC28A-202ENST00000611852 APOA5Q6Q788 366 aa19.28■□□□□ 0.68
CCDC28A-202ENST00000611852 TNS4Q8IZW8 715 aa19.28■□□□□ 0.68
CCDC28A-202ENST00000611852 CTCFLQ8NI51 663 aaPredicted RBP19.28■□□□□ 0.68
CCDC28A-202ENST00000611852 SOCS4Q8WXH5 440 aa19.28■□□□□ 0.68
CCDC28A-202ENST00000611852 USP6NLQ92738 828 aa19.28■□□□□ 0.68
CCDC28A-202ENST00000611852 NUDT12Q9BQG2 462 aa19.28■□□□□ 0.68
CCDC28A-202ENST00000611852 IVNS1ABPQ9Y6Y0 642 aa19.28■□□□□ 0.68
CCDC28A-202ENST00000611852 SLC15A5A6NIM6 579 aa19.27■□□□□ 0.68
CCDC28A-202ENST00000611852 STRNO43815 780 aa19.27■□□□□ 0.68
CCDC28A-202ENST00000611852 ICAM1P05362 532 aa19.27■□□□□ 0.68
CCDC28A-202ENST00000611852 RXRAP19793 462 aa19.27■□□□□ 0.68
CCDC28A-202ENST00000611852 SLC4A3P48751 1232 aa19.27■□□□□ 0.68
CCDC28A-202ENST00000611852 IRF5Q13568 498 aa19.27■□□□□ 0.68
CCDC28A-202ENST00000611852 GRB14Q14449 540 aa19.27■□□□□ 0.68
CCDC28A-202ENST00000611852 RAB11FIP4Q86YS3 637 aa19.27■□□□□ 0.68
CCDC28A-202ENST00000611852 RAET1EQ8TD07 263 aa19.27■□□□□ 0.68
CCDC28A-202ENST00000611852 BRF1Q92994 677 aa19.27■□□□□ 0.68
CCDC28A-202ENST00000611852 KIF5BP33176 963 aa19.26■□□□□ 0.67
CCDC28A-202ENST00000611852 SLC35G1Q2M3R5 365 aa19.26■□□□□ 0.67
CCDC28A-202ENST00000611852 SYNE3Q6ZMZ3 975 aa19.26■□□□□ 0.67
CCDC28A-202ENST00000611852 NBPF11Q86T75 865 aa19.26■□□□□ 0.67
CCDC28A-202ENST00000611852 MICU3Q86XE3 530 aa19.26■□□□□ 0.67
CCDC28A-202ENST00000611852 JMJD4Q9H9V9 463 aa19.26■□□□□ 0.67
CCDC28A-202ENST00000611852 KLF18A0A0U1RQI7 1052 aa19.25■□□□□ 0.67
CCDC28A-202ENST00000611852 DHX16O60231 1041 aaKnown RBP19.25■□□□□ 0.67
CCDC28A-202ENST00000611852 APOBRQ0VD83 1088 aa19.25■□□□□ 0.67
CCDC28A-202ENST00000611852 CDC37Q16543 378 aaPredicted RBP19.25■□□□□ 0.67
CCDC28A-202ENST00000611852 CCDC144CPQ8IYA2 1237 aa19.25■□□□□ 0.67
CCDC28A-202ENST00000611852 ABRAQ8N0Z2 381 aa19.25■□□□□ 0.67
CCDC28A-202ENST00000611852 FANCBQ8NB91 859 aa19.25■□□□□ 0.67
CCDC28A-202ENST00000611852 CHST13Q8NET6 341 aa19.25■□□□□ 0.67
CCDC28A-202ENST00000611852 RIOX1Q9H6W3 641 aa19.25■□□□□ 0.67
CCDC28A-202ENST00000611852 VAT1LQ9HCJ6 419 aa19.25■□□□□ 0.67
CCDC28A-202ENST00000611852 CCPG1Q9ULG6 757 aa19.25■□□□□ 0.67
CCDC28A-202ENST00000611852 HPS5Q9UPZ3 1129 aa19.25■□□□□ 0.67
CCDC28A-202ENST00000611852 SMCHD1A6NHR9 2005 aa19.25■□□□□ 0.67
CCDC28A-202ENST00000611852 ZBTB43O43298 467 aa19.25■□□□□ 0.67
CCDC28A-202ENST00000611852 CYTH3O43739 400 aa19.25■□□□□ 0.67
CCDC28A-202ENST00000611852 FCER1AP12319 257 aa19.25■□□□□ 0.67
CCDC28A-202ENST00000611852 ALAS1P13196 640 aa19.25■□□□□ 0.67
CCDC28A-202ENST00000611852 CYP2B6P20813 491 aa19.25■□□□□ 0.67
CCDC28A-202ENST00000611852 ADORA2AP29274 412 aa19.25■□□□□ 0.67
CCDC28A-202ENST00000611852 MAP2K5Q13163 448 aa19.25■□□□□ 0.67
CCDC28A-202ENST00000611852 TOB2Q14106 344 aaPredicted RBP19.25■□□□□ 0.67
CCDC28A-202ENST00000611852 TKFCQ3LXA3 575 aa19.25■□□□□ 0.67
CCDC28A-202ENST00000611852 MTMR8Q96EF0 704 aa19.25■□□□□ 0.67
CCDC28A-202ENST00000611852 HOMER2Q9NSB8 354 aa19.25■□□□□ 0.67
CCDC28A-202ENST00000611852 FBXO40Q9UH90 709 aa19.25■□□□□ 0.67
CCDC28A-202ENST00000611852 ZNF236Q9UL36 1845 aa19.25■□□□□ 0.67
CCDC28A-202ENST00000611852 BAZ2BQ9UIF8 2168 aaKnown RBP19.24■□□□□ 0.67
CCDC28A-202ENST00000611852 ADCY3O60266 1144 aa19.24■□□□□ 0.67
CCDC28A-202ENST00000611852 XRCC5P13010 732 aaKnown RBP19.24■□□□□ 0.67
CCDC28A-202ENST00000611852 TAL1P17542 331 aaPredicted RBP19.24■□□□□ 0.67
CCDC28A-202ENST00000611852 RGS2P41220 211 aa19.24■□□□□ 0.67
CCDC28A-202ENST00000611852 RCAN1P53805 252 aa19.24■□□□□ 0.67
CCDC28A-202ENST00000611852 QRICH1Q2TAL8 776 aa19.24■□□□□ 0.67
CCDC28A-202ENST00000611852 DHX30Q7L2E3 1194 aaKnown RBP eCLIP19.24■□□□□ 0.67
CCDC28A-202ENST00000611852 TRERF1Q96PN7 1200 aa19.24■□□□□ 0.67
CCDC28A-202ENST00000611852 MMP19Q99542 508 aa19.24■□□□□ 0.67
CCDC28A-202ENST00000611852 RNF146Q9NTX7 359 aa19.24■□□□□ 0.67
CCDC28A-202ENST00000611852 PDRG1Q9NUG6 133 aa19.24■□□□□ 0.67
CCDC28A-202ENST00000611852 PNMA2Q9UL42 364 aa19.24■□□□□ 0.67
CCDC28A-202ENST00000611852 PLEKHA8P1O95397 391 aa19.23■□□□□ 0.67
CCDC28A-202ENST00000611852 HOXC6P09630 235 aa19.23■□□□□ 0.67
CCDC28A-202ENST00000611852 SMARCA1P28370 1054 aa19.23■□□□□ 0.67
CCDC28A-202ENST00000611852 GRK4P32298 578 aa19.23■□□□□ 0.67
CCDC28A-202ENST00000611852 GNAQP50148 359 aa19.23■□□□□ 0.67
CCDC28A-202ENST00000611852 EVCP57679 992 aa19.23■□□□□ 0.67
CCDC28A-202ENST00000611852 KCTD2Q14681 263 aa19.23■□□□□ 0.67
CCDC28A-202ENST00000611852 SLC9C1Q4G0N8 1177 aa19.23■□□□□ 0.67
CCDC28A-202ENST00000611852 PXYLP1Q8TE99 480 aa19.23■□□□□ 0.67
CCDC28A-202ENST00000611852 APBA2Q99767 749 aa19.23■□□□□ 0.67
CCDC28A-202ENST00000611852 LZTS2Q9BRK4 669 aa19.23■□□□□ 0.67
CCDC28A-202ENST00000611852 SPZ1Q9BXG8 430 aa19.23■□□□□ 0.67
CCDC28A-202ENST00000611852 C22orf23Q9BZE7 217 aa19.23■□□□□ 0.67
CCDC28A-202ENST00000611852 ACAD9Q9H845 621 aa19.23■□□□□ 0.67
CCDC28A-202ENST00000611852 ZNFX1Q9P2E3 1918 aaKnown RBP19.23■□□□□ 0.67
CCDC28A-202ENST00000611852 COBLO75128 1261 aa19.22■□□□□ 0.67
CCDC28A-202ENST00000611852 ELNP15502 786 aa19.22■□□□□ 0.67
CCDC28A-202ENST00000611852 MUM1L1Q5H9M0 696 aa19.22■□□□□ 0.67
CCDC28A-202ENST00000611852 DPP9Q86TI2 863 aa19.22■□□□□ 0.67
CCDC28A-202ENST00000611852 SRBD1Q8N5C6 995 aaKnown RBP19.22■□□□□ 0.67
CCDC28A-202ENST00000611852 SLAIN1Q8ND83 568 aa19.22■□□□□ 0.67
CCDC28A-202ENST00000611852 SH3TC2Q8TF17 1288 aa19.22■□□□□ 0.67
CCDC28A-202ENST00000611852 ABHD8Q96I13 439 aa19.22■□□□□ 0.67
CCDC28A-202ENST00000611852 NAP1L2Q9ULW6 460 aaPredicted RBP19.22■□□□□ 0.67
CCDC28A-202ENST00000611852 MYH6P13533 1939 aa19.22■□□□□ 0.67
CCDC28A-202ENST00000611852 GOLGA8BA8MQT2 603 aa19.21■□□□□ 0.67
CCDC28A-202ENST00000611852 ZBTB5O15062 677 aa19.21■□□□□ 0.67
CCDC28A-202ENST00000611852 RBM25P49756 843 aaKnown RBP19.21■□□□□ 0.67
CCDC28A-202ENST00000611852 RTN1Q16799 776 aa19.21■□□□□ 0.67
CCDC28A-202ENST00000611852 TMTC3Q6ZXV5 915 aa19.21■□□□□ 0.67
CCDC28A-202ENST00000611852 CMTR1Q8N1G2 835 aaKnown RBP19.21■□□□□ 0.67
CCDC28A-202ENST00000611852 ARMC5Q96C12 935 aa19.21■□□□□ 0.67
CCDC28A-202ENST00000611852 PIGSQ96S52 555 aa19.21■□□□□ 0.67
CCDC28A-202ENST00000611852 FAM217BQ9NTX9 383 aaPredicted RBP19.21■□□□□ 0.67
CCDC28A-202ENST00000611852 RBM28Q9NW13 759 aaKnown RBP19.21■□□□□ 0.67
CCDC28A-202ENST00000611852 CENPFP49454 3210 aa19.21■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 65.4 ms