RNA–Protein interactions for RNA: ENST00000600012.5

UPF1-208, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 5

Gene UPF1, Length 501 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-208ENST00000600012 MYH4Q9Y623 1939 aa14.87□□□□□ -0.03
UPF1-208ENST00000600012 RAD21O60216 631 aa14.86□□□□□ -0.03
UPF1-208ENST00000600012 RARBP10826 455 aa14.86□□□□□ -0.03
UPF1-208ENST00000600012 PSMA5P28066 241 aa14.86□□□□□ -0.03
UPF1-208ENST00000600012 PPARAQ07869 468 aa14.86□□□□□ -0.03
UPF1-208ENST00000600012 FAM83BQ5T0W9 1011 aa14.86□□□□□ -0.03
UPF1-208ENST00000600012 BLOC1S2Q6QNY1 142 aa14.86□□□□□ -0.03
UPF1-208ENST00000600012 HSCBQ8IWL3 235 aa14.86□□□□□ -0.03
UPF1-208ENST00000600012 STK11IPQ8N1F8 1099 aa14.86□□□□□ -0.03
UPF1-208ENST00000600012 TCEANC2Q96MN5 208 aa14.86□□□□□ -0.03
UPF1-208ENST00000600012 IPO9Q96P70 1041 aaKnown RBP14.86□□□□□ -0.03
UPF1-208ENST00000600012 NEK1Q96PY6 1258 aa14.86□□□□□ -0.03
UPF1-208ENST00000600012 TINF2Q9BSI4 451 aa14.86□□□□□ -0.03
UPF1-208ENST00000600012 XPNPEP3Q9NQH7 507 aa14.86□□□□□ -0.03
UPF1-208ENST00000600012 PRDM5Q9NQX1 630 aaPredicted RBP14.86□□□□□ -0.03
UPF1-208ENST00000600012 ZNF214Q9UL59 606 aaPredicted RBP14.86□□□□□ -0.03
UPF1-208ENST00000600012 TACC3Q9Y6A5 838 aa14.86□□□□□ -0.03
UPF1-208ENST00000600012 ST18O60284 1047 aa14.85□□□□□ -0.03
UPF1-208ENST00000600012 PGK2P07205 417 aa14.85□□□□□ -0.03
UPF1-208ENST00000600012 RPS6KB1P23443 525 aa14.85□□□□□ -0.03
UPF1-208ENST00000600012 SLC4A3P48751 1232 aa14.85□□□□□ -0.03
UPF1-208ENST00000600012 ZNF792Q3KQV3 632 aa14.85□□□□□ -0.03
UPF1-208ENST00000600012 SBK1Q52WX2 424 aa14.85□□□□□ -0.03
UPF1-208ENST00000600012 NOL8Q76FK4 1167 aaKnown RBP14.85□□□□□ -0.03
UPF1-208ENST00000600012 RUFY3Q7L099 469 aa14.85□□□□□ -0.03
UPF1-208ENST00000600012 RNF180Q86T96 592 aa14.85□□□□□ -0.03
UPF1-208ENST00000600012 REPS2Q8NFH8 660 aa14.85□□□□□ -0.03
UPF1-208ENST00000600012 SNX21Q969T3 373 aa14.85□□□□□ -0.03
UPF1-208ENST00000600012 FERMT2Q96AC1 680 aa14.85□□□□□ -0.03
UPF1-208ENST00000600012 TTC14Q96N46 770 aa14.85□□□□□ -0.03
UPF1-208ENST00000600012 PDLIM7Q9NR12 457 aa14.85□□□□□ -0.03
UPF1-208ENST00000600012 PHF24Q9UPV7 400 aa14.85□□□□□ -0.03
UPF1-208ENST00000600012 CYP46A1Q9Y6A2 500 aa14.85□□□□□ -0.03
UPF1-208ENST00000600012 NEDD4P46934 1319 aa14.85□□□□□ -0.03
UPF1-208ENST00000600012 AKR1A1P14550 325 aa14.84□□□□□ -0.03
UPF1-208ENST00000600012 RASA1P20936 1047 aa14.84□□□□□ -0.03
UPF1-208ENST00000600012 BECN1Q14457 450 aa14.84□□□□□ -0.03
UPF1-208ENST00000600012 SHHQ15465 462 aa14.84□□□□□ -0.03
UPF1-208ENST00000600012 ZNF697Q5TEC3 545 aa14.84□□□□□ -0.03
UPF1-208ENST00000600012 GUCD1Q96NT3 240 aa14.84□□□□□ -0.03
UPF1-208ENST00000600012 SLF1Q9BQI6 1058 aa14.84□□□□□ -0.03
UPF1-208ENST00000600012 GNL3Q9BVP2 549 aaKnown RBP eCLIP14.84□□□□□ -0.03
UPF1-208ENST00000600012 TEX13BQ9BXU2 312 aa14.84□□□□□ -0.03
UPF1-208ENST00000600012 INCENPQ9NQS7 918 aa14.84□□□□□ -0.03
UPF1-208ENST00000600012 PDRG1Q9NUG6 133 aa14.84□□□□□ -0.03
UPF1-208ENST00000600012 NYAP2Q9P242 653 aa14.84□□□□□ -0.03
UPF1-208ENST00000600012 TLE2Q04725 743 aa14.83□□□□□ -0.04
UPF1-208ENST00000600012 C9orf50Q5SZB4 431 aa14.83□□□□□ -0.04
UPF1-208ENST00000600012 AKNAD1Q5T1N1 836 aa14.83□□□□□ -0.04
UPF1-208ENST00000600012 RALYLQ86SE5 291 aaKnown RBP14.83□□□□□ -0.04
UPF1-208ENST00000600012 MSL3Q8N5Y2 521 aaKnown RBP14.83□□□□□ -0.04
UPF1-208ENST00000600012 NCOA7Q8NI08 942 aa14.83□□□□□ -0.04
UPF1-208ENST00000600012 STAG1Q8WVM7 1258 aa14.83□□□□□ -0.04
UPF1-208ENST00000600012 BADQ92934 168 aa14.83□□□□□ -0.04
UPF1-208ENST00000600012 MKNK2Q9HBH9 465 aa14.83□□□□□ -0.04
UPF1-208ENST00000600012 ANAPC4Q9UJX5 808 aa14.83□□□□□ -0.04
UPF1-208ENST00000600012 CNPY2Q9Y2B0 182 aa14.83□□□□□ -0.04
UPF1-208ENST00000600012 MCM3APO60318 1980 aa14.82□□□□□ -0.04
UPF1-208ENST00000600012 TRIM43BA6NCK2 446 aa14.82□□□□□ -0.04
UPF1-208ENST00000600012 PGK1P00558 417 aa14.82□□□□□ -0.04
UPF1-208ENST00000600012 ZNF865P0CJ78 1059 aaPredicted RBP14.82□□□□□ -0.04
UPF1-208ENST00000600012 TAL1P17542 331 aaPredicted RBP14.82□□□□□ -0.04
UPF1-208ENST00000600012 AK2P54819 239 aa14.82□□□□□ -0.04
UPF1-208ENST00000600012 SNRNP48Q6IEG0 339 aaKnown RBP14.82□□□□□ -0.04
UPF1-208ENST00000600012 CHST3Q7LGC8 479 aa14.82□□□□□ -0.04
UPF1-208ENST00000600012 SH3RF1Q7Z6J0 888 aa14.82□□□□□ -0.04
UPF1-208ENST00000600012 MB21D2Q8IYB1 491 aaPredicted RBP14.82□□□□□ -0.04
UPF1-208ENST00000600012 TRIM43Q96BQ3 446 aaPredicted RBP14.82□□□□□ -0.04
UPF1-208ENST00000600012 FAM161BQ96MY7 647 aa14.82□□□□□ -0.04
UPF1-208ENST00000600012 NUP88Q99567 741 aaPredicted RBP14.82□□□□□ -0.04
UPF1-208ENST00000600012 LRRC2Q9BYS8 371 aa14.82□□□□□ -0.04
UPF1-208ENST00000600012 TOMM22Q9NS69 142 aa14.82□□□□□ -0.04
UPF1-208ENST00000600012 B4E1Z4 1266 aa14.81□□□□□ -0.04
UPF1-208ENST00000600012 F5H6K3 240 aa14.81□□□□□ -0.04
UPF1-208ENST00000600012 K7ELQ4 463 aaPredicted RBP14.81□□□□□ -0.04
UPF1-208ENST00000600012 NDUFB10O96000 172 aa14.81□□□□□ -0.04
UPF1-208ENST00000600012 CLTBP09497 229 aa14.81□□□□□ -0.04
UPF1-208ENST00000600012 KLRC3Q07444 240 aa14.81□□□□□ -0.04
UPF1-208ENST00000600012 TRDNQ13061 729 aa14.81□□□□□ -0.04
UPF1-208ENST00000600012 RRP12Q5JTH9 1297 aaKnown RBP14.81□□□□□ -0.04
UPF1-208ENST00000600012 MFSD6Q6ZSS7 791 aa14.81□□□□□ -0.04
UPF1-208ENST00000600012 PRPF38AQ8NAV1 312 aaKnown RBP14.81□□□□□ -0.04
UPF1-208ENST00000600012 DDX11Q96FC9 970 aa14.81□□□□□ -0.04
UPF1-208ENST00000600012 LARP6Q9BRS8 491 aaKnown RBP14.81□□□□□ -0.04
UPF1-208ENST00000600012 RNF41Q9H4P4 317 aaPredicted RBP14.81□□□□□ -0.04
UPF1-208ENST00000600012 ZNF287Q9HBT7 754 aa14.81□□□□□ -0.04
UPF1-208ENST00000600012 SYNGAP1Q96PV0 1343 aa14.81□□□□□ -0.04
UPF1-208ENST00000600012 A0A0C4DFX4 3053 aa14.81□□□□□ -0.04
UPF1-208ENST00000600012 A0A1W2PQ45 241 aaPredicted RBP14.8□□□□□ -0.04
UPF1-208ENST00000600012 A0A1W2PQY0 241 aa14.8□□□□□ -0.04
UPF1-208ENST00000600012 ATP2A1O14983 1001 aa14.8□□□□□ -0.04
UPF1-208ENST00000600012 PRC1O43663 620 aa14.8□□□□□ -0.04
UPF1-208ENST00000600012 ADAMTS4O75173 837 aa14.8□□□□□ -0.04
UPF1-208ENST00000600012 PRDM1O75626 825 aa14.8□□□□□ -0.04
UPF1-208ENST00000600012 HMGB1P09429 215 aaKnown RBP14.8□□□□□ -0.04
UPF1-208ENST00000600012 ANTXR2P58335 489 aa14.8□□□□□ -0.04
UPF1-208ENST00000600012 SMAD3P84022 425 aaKnown RBP14.8□□□□□ -0.04
UPF1-208ENST00000600012 TOB2Q14106 344 aaPredicted RBP14.8□□□□□ -0.04
UPF1-208ENST00000600012 Q6ZUG5 572 aa14.8□□□□□ -0.04
UPF1-208ENST00000600012 CYB5R4Q7L1T6 521 aa14.8□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms