RNA–Protein interactions for RNA: ENST00000598907.5

SHKBP1-218, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 738 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-218ENST00000598907 CYP2E1P05181 493 aaPredicted RBP16.69■□□□□ 0.26
SHKBP1-218ENST00000598907 PLCD1P51178 756 aa16.69■□□□□ 0.26
SHKBP1-218ENST00000598907 EVX2Q03828 476 aa16.69■□□□□ 0.26
SHKBP1-218ENST00000598907 OS9Q13438 667 aaPredicted RBP16.69■□□□□ 0.26
SHKBP1-218ENST00000598907 CHD1LQ86WJ1 897 aa16.69■□□□□ 0.26
SHKBP1-218ENST00000598907 GJD3Q8N144 294 aa16.69■□□□□ 0.26
SHKBP1-218ENST00000598907 SMARCA5O60264 1052 aaPredicted RBP16.68■□□□□ 0.26
SHKBP1-218ENST00000598907 BEX3Q00994 111 aa16.68■□□□□ 0.26
SHKBP1-218ENST00000598907 GRB10Q13322 594 aa16.68■□□□□ 0.26
SHKBP1-218ENST00000598907 TTLL4Q14679 1199 aa16.68■□□□□ 0.26
SHKBP1-218ENST00000598907 SPRED2Q7Z698 418 aa16.68■□□□□ 0.26
SHKBP1-218ENST00000598907 RIOX2Q8IUF8 465 aa16.68■□□□□ 0.26
SHKBP1-218ENST00000598907 NOC4LQ9BVI4 516 aaKnown RBP16.68■□□□□ 0.26
SHKBP1-218ENST00000598907 FBXO28Q9NVF7 368 aa16.68■□□□□ 0.26
SHKBP1-218ENST00000598907 IDH1O75874 414 aaKnown RBP16.67■□□□□ 0.26
SHKBP1-218ENST00000598907 POLR3DP05423 398 aaPredicted RBP16.67■□□□□ 0.26
SHKBP1-218ENST00000598907 ZAP70P43403 619 aa16.67■□□□□ 0.26
SHKBP1-218ENST00000598907 CXCL17Q6UXB2 119 aa16.67■□□□□ 0.26
SHKBP1-218ENST00000598907 TRPV6Q9H1D0 765 aa16.67■□□□□ 0.26
SHKBP1-218ENST00000598907 IL1RAPL2Q9NP60 686 aa16.67■□□□□ 0.26
SHKBP1-218ENST00000598907 STAT3P40763 770 aa16.66■□□□□ 0.26
SHKBP1-218ENST00000598907 SLC4A3P48751 1232 aa16.66■□□□□ 0.26
SHKBP1-218ENST00000598907 GJA9P57773 515 aa16.66■□□□□ 0.26
SHKBP1-218ENST00000598907 TAP1Q03518 808 aa16.66■□□□□ 0.26
SHKBP1-218ENST00000598907 CCDC144BQ3MJ40 725 aa16.66■□□□□ 0.26
SHKBP1-218ENST00000598907 TNNI3KQ59H18 835 aa16.66■□□□□ 0.26
SHKBP1-218ENST00000598907 DEFB128Q7Z7B8 93 aa16.66■□□□□ 0.26
SHKBP1-218ENST00000598907 RPUSD2Q8IZ73 545 aaKnown RBP16.66■□□□□ 0.26
SHKBP1-218ENST00000598907 EAF2Q96CJ1 260 aaPredicted RBP16.66■□□□□ 0.26
SHKBP1-218ENST00000598907 UPF3AQ9H1J1 476 aaKnown RBP16.66■□□□□ 0.26
SHKBP1-218ENST00000598907 FPGT-TNNI3KV9GXZ4 949 aa16.66■□□□□ 0.26
SHKBP1-218ENST00000598907 SALL3Q9BXA9 1300 aa16.66■□□□□ 0.26
SHKBP1-218ENST00000598907 RAD21O60216 631 aa16.65■□□□□ 0.26
SHKBP1-218ENST00000598907 PDE4AP27815 886 aa16.65■□□□□ 0.26
SHKBP1-218ENST00000598907 ACVR2BQ13705 512 aa16.65■□□□□ 0.26
SHKBP1-218ENST00000598907 FAM178BQ8IXR5 827 aa16.65■□□□□ 0.26
SHKBP1-218ENST00000598907 CLASRPQ8N2M8 674 aaKnown RBP16.65■□□□□ 0.26
SHKBP1-218ENST00000598907 MAGEB6Q8N7X4 407 aa16.65■□□□□ 0.26
SHKBP1-218ENST00000598907 ANKS1AQ92625 1134 aa16.65■□□□□ 0.26
SHKBP1-218ENST00000598907 DDX11Q96FC9 970 aa16.65■□□□□ 0.26
SHKBP1-218ENST00000598907 PHOX2BQ99453 314 aa16.65■□□□□ 0.26
SHKBP1-218ENST00000598907 DBNDD2Q9BQY9 259 aa16.65■□□□□ 0.26
SHKBP1-218ENST00000598907 LNPKQ9C0E8 428 aa16.65■□□□□ 0.26
SHKBP1-218ENST00000598907 ARHGEF10LQ9HCE6 1279 aa16.65■□□□□ 0.26
SHKBP1-218ENST00000598907 CDKN2AIPQ9NXV6 580 aaPredicted RBP16.65■□□□□ 0.26
SHKBP1-218ENST00000598907 MCM3APO60318 1980 aa16.65■□□□□ 0.26
SHKBP1-218ENST00000598907 CACNA1AO00555 2505 aa16.65■□□□□ 0.26
SHKBP1-218ENST00000598907 WDR46O15213 610 aaKnown RBP16.64■□□□□ 0.25
SHKBP1-218ENST00000598907 B4GALT4O60513 344 aa16.64■□□□□ 0.25
SHKBP1-218ENST00000598907 ALADP13716 330 aa16.64■□□□□ 0.25
SHKBP1-218ENST00000598907 IL9P15248 144 aa16.64■□□□□ 0.25
SHKBP1-218ENST00000598907 ICA1Q05084 483 aa16.64■□□□□ 0.25
SHKBP1-218ENST00000598907 CCDC158Q5M9N0 1113 aa16.64■□□□□ 0.25
SHKBP1-218ENST00000598907 TMEM179Q6ZVK1 233 aa16.64■□□□□ 0.25
SHKBP1-218ENST00000598907 NOL8Q76FK4 1167 aaKnown RBP16.64■□□□□ 0.25
SHKBP1-218ENST00000598907 MSL3Q8N5Y2 521 aaKnown RBP16.64■□□□□ 0.25
SHKBP1-218ENST00000598907 GDPD5Q8WTR4 605 aa16.64■□□□□ 0.25
SHKBP1-218ENST00000598907 VWCEQ96DN2 955 aa16.64■□□□□ 0.25
SHKBP1-218ENST00000598907 UBE2ZQ9H832 354 aaPredicted RBP16.64■□□□□ 0.25
SHKBP1-218ENST00000598907 VCPKMTQ9H867 229 aa16.64■□□□□ 0.25
SHKBP1-218ENST00000598907 ZNF214Q9UL59 606 aaPredicted RBP16.64■□□□□ 0.25
SHKBP1-218ENST00000598907 MYH8P13535 1937 aa16.64■□□□□ 0.25
SHKBP1-218ENST00000598907 WDFY4Q6ZS81 3184 aa16.64■□□□□ 0.25
SHKBP1-218ENST00000598907 BRWD1Q9NSI6 2320 aa16.63■□□□□ 0.25
SHKBP1-218ENST00000598907 VWA5AO00534 786 aa16.63■□□□□ 0.25
SHKBP1-218ENST00000598907 CTAGE5O15320 804 aa16.63■□□□□ 0.25
SHKBP1-218ENST00000598907 KCNA5P22460 613 aa16.63■□□□□ 0.25
SHKBP1-218ENST00000598907 PSMC6P62333 389 aa16.63■□□□□ 0.25
SHKBP1-218ENST00000598907 ITGA7Q13683 1181 aa16.63■□□□□ 0.25
SHKBP1-218ENST00000598907 SH2D4AQ9H788 454 aa16.63■□□□□ 0.25
SHKBP1-218ENST00000598907 SCN5AQ14524 2016 aa16.63■□□□□ 0.25
SHKBP1-218ENST00000598907 LPXNO60711 386 aa16.62■□□□□ 0.25
SHKBP1-218ENST00000598907 PTGS1P23219 599 aa16.62■□□□□ 0.25
SHKBP1-218ENST00000598907 GABPAQ06546 454 aa16.62■□□□□ 0.25
SHKBP1-218ENST00000598907 SNRNP48Q6IEG0 339 aaKnown RBP16.62■□□□□ 0.25
SHKBP1-218ENST00000598907 AACSQ86V21 672 aa16.62■□□□□ 0.25
SHKBP1-218ENST00000598907 ZBTB47Q9UFB7 747 aaPredicted RBP16.62■□□□□ 0.25
SHKBP1-218ENST00000598907 TMX2Q9Y320 296 aa16.62■□□□□ 0.25
SHKBP1-218ENST00000598907 DCXO43602 365 aa16.61■□□□□ 0.25
SHKBP1-218ENST00000598907 CYP2D6P10635 497 aa16.61■□□□□ 0.25
SHKBP1-218ENST00000598907 AKR1B1P15121 316 aa16.61■□□□□ 0.25
SHKBP1-218ENST00000598907 COPB2P35606 906 aa16.61■□□□□ 0.25
SHKBP1-218ENST00000598907 MAMDC4Q6UXC1 1216 aa16.61■□□□□ 0.25
SHKBP1-218ENST00000598907 CERS3Q8IU89 383 aa16.61■□□□□ 0.25
SHKBP1-218ENST00000598907 PLEKHM2Q8IWE5 1019 aa16.61■□□□□ 0.25
SHKBP1-218ENST00000598907 SLC43A3Q8NBI5 491 aa16.61■□□□□ 0.25
SHKBP1-218ENST00000598907 OTUD7AQ8TE49 926 aaPredicted RBP16.61■□□□□ 0.25
SHKBP1-218ENST00000598907 AGBL1Q96MI9 1066 aa16.61■□□□□ 0.25
SHKBP1-218ENST00000598907 SLC9A7Q96T83 725 aa16.61■□□□□ 0.25
SHKBP1-218ENST00000598907 CCDC8Q9H0W5 538 aaPredicted RBP16.61■□□□□ 0.25
SHKBP1-218ENST00000598907 MCM9Q9NXL9 1143 aa16.61■□□□□ 0.25
SHKBP1-218ENST00000598907 DBNLQ9UJU6 430 aaKnown RBP16.61■□□□□ 0.25
SHKBP1-218ENST00000598907 MTUS1Q9ULD2 1270 aa16.61■□□□□ 0.25
SHKBP1-218ENST00000598907 PPP1R9AQ9ULJ8 1098 aa16.61■□□□□ 0.25
SHKBP1-218ENST00000598907 ADAMTS5Q9UNA0 930 aa16.61■□□□□ 0.25
SHKBP1-218ENST00000598907 ZNF536O15090 1300 aa16.61■□□□□ 0.25
SHKBP1-218ENST00000598907 GRIN2DO15399 1336 aa16.61■□□□□ 0.25
SHKBP1-218ENST00000598907 C11orf97A0A1B0GVM6 126 aaPredicted RBP16.6■□□□□ 0.25
SHKBP1-218ENST00000598907 CYP2C9P11712 490 aa16.6■□□□□ 0.25
SHKBP1-218ENST00000598907 ACTN1P12814 892 aa16.6■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 64.7 ms