RNA–Protein interactions for RNA: ENST00000596814.5

VRK3-212, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 1,736 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-212ENST00000596814 CALML3P27482 149 aa16.87■□□□□ 0.29
VRK3-212ENST00000596814 USP17L24Q0WX57 530 aa16.87■□□□□ 0.29
VRK3-212ENST00000596814 SNAPC2Q13487 334 aa16.87■□□□□ 0.29
VRK3-212ENST00000596814 DIS3L2Q8IYB7 885 aaKnown RBP16.87■□□□□ 0.29
VRK3-212ENST00000596814 KRT2P35908 639 aa16.86■□□□□ 0.29
VRK3-212ENST00000596814 TREML2Q5T2D2 321 aa16.86■□□□□ 0.29
VRK3-212ENST00000596814 CATSPERGQ6ZRH7 1159 aa16.86■□□□□ 0.29
VRK3-212ENST00000596814 FBXO11Q86XK2 927 aa16.86■□□□□ 0.29
VRK3-212ENST00000596814 COA7Q96BR5 231 aa16.86■□□□□ 0.29
VRK3-212ENST00000596814 AMNQ9BXJ7 453 aa16.86■□□□□ 0.29
VRK3-212ENST00000596814 KIF28PB7ZC32 967 aa16.85■□□□□ 0.29
VRK3-212ENST00000596814 FOXD4L6Q3SYB3 417 aaPredicted RBP16.85■□□□□ 0.29
VRK3-212ENST00000596814 FOXD4L3Q6VB84 417 aaPredicted RBP16.85■□□□□ 0.29
VRK3-212ENST00000596814 FASTKD5Q7L8L6 764 aaKnown RBP16.85■□□□□ 0.29
VRK3-212ENST00000596814 BRAPQ7Z569 592 aa16.85■□□□□ 0.29
VRK3-212ENST00000596814 ZNF784Q8NCA9 323 aaPredicted RBP16.85■□□□□ 0.29
VRK3-212ENST00000596814 COL11A1P12107 1806 aaPredicted RBP16.85■□□□□ 0.29
VRK3-212ENST00000596814 ESYT2A0FGR8 921 aa16.84■□□□□ 0.29
VRK3-212ENST00000596814 BTBD18B2RXH4 712 aa16.84■□□□□ 0.29
VRK3-212ENST00000596814 ZBTB48P10074 688 aaPredicted RBP16.84■□□□□ 0.29
VRK3-212ENST00000596814 FDX1P10109 184 aa16.84■□□□□ 0.29
VRK3-212ENST00000596814 TRAF1Q13077 416 aa16.84■□□□□ 0.29
VRK3-212ENST00000596814 NPY5RQ15761 445 aa16.84■□□□□ 0.29
VRK3-212ENST00000596814 GALNT17Q6IS24 598 aa16.84■□□□□ 0.29
VRK3-212ENST00000596814 CCDC174Q6PII3 467 aa16.84■□□□□ 0.29
VRK3-212ENST00000596814 GBP4Q96PP9 640 aa16.84■□□□□ 0.29
VRK3-212ENST00000596814 ZMYND12Q9H0C1 365 aa16.84■□□□□ 0.29
VRK3-212ENST00000596814 FOXP1Q9H334 677 aaPredicted RBP16.84■□□□□ 0.29
VRK3-212ENST00000596814 PCDHA4Q9UN74 947 aa16.84■□□□□ 0.29
VRK3-212ENST00000596814 AGTPBP1Q9UPW5 1226 aa16.84■□□□□ 0.29
VRK3-212ENST00000596814 PCDHA1Q9Y5I3 950 aa16.84■□□□□ 0.29
VRK3-212ENST00000596814 MYPNQ86TC9 1320 aa16.84■□□□□ 0.29
VRK3-212ENST00000596814 A0A0G2JMZ2 1700 aa16.84■□□□□ 0.29
VRK3-212ENST00000596814 SMCO2A6NFE2 343 aa16.84■□□□□ 0.29
VRK3-212ENST00000596814 U2AF2P26368 475 aaKnown RBP eCLIP16.84■□□□□ 0.29
VRK3-212ENST00000596814 GNA11P29992 359 aa16.84■□□□□ 0.29
VRK3-212ENST00000596814 DSG3P32926 999 aa16.84■□□□□ 0.29
VRK3-212ENST00000596814 GTF2A2P52657 109 aa16.84■□□□□ 0.29
VRK3-212ENST00000596814 COG2Q14746 738 aa16.84■□□□□ 0.29
VRK3-212ENST00000596814 USH1GQ495M9 461 aa16.84■□□□□ 0.29
VRK3-212ENST00000596814 SPRYD7Q5W111 196 aa16.84■□□□□ 0.29
VRK3-212ENST00000596814 SAPCD2Q86UD0 394 aa16.84■□□□□ 0.29
VRK3-212ENST00000596814 BLIDQ8IZY5 108 aa16.84■□□□□ 0.29
VRK3-212ENST00000596814 DAGLBQ8NCG7 672 aa16.84■□□□□ 0.29
VRK3-212ENST00000596814 ATG4CQ96DT6 458 aa16.84■□□□□ 0.29
VRK3-212ENST00000596814 SLC38A10Q9HBR0 1119 aa16.84■□□□□ 0.29
VRK3-212ENST00000596814 C6orf50Q9HD87 102 aa16.84■□□□□ 0.29
VRK3-212ENST00000596814 CTDP1Q9Y5B0 961 aaPredicted RBP16.84■□□□□ 0.29
VRK3-212ENST00000596814 TCHHQ07283 1943 aa16.84■□□□□ 0.29
VRK3-212ENST00000596814 BAG4O95429 457 aaKnown RBP16.83■□□□□ 0.28
VRK3-212ENST00000596814 HOXA7P31268 230 aaPredicted RBP16.83■□□□□ 0.28
VRK3-212ENST00000596814 FSTL1Q12841 308 aa16.83■□□□□ 0.28
VRK3-212ENST00000596814 MKRN3Q13064 507 aaKnown RBP16.83■□□□□ 0.28
VRK3-212ENST00000596814 NR5A1Q13285 461 aa16.83■□□□□ 0.28
VRK3-212ENST00000596814 MOGSQ13724 837 aa16.83■□□□□ 0.28
VRK3-212ENST00000596814 CLEC17AQ6ZS10 378 aa16.83■□□□□ 0.28
VRK3-212ENST00000596814 NOSTRINQ8IVI9 506 aa16.83■□□□□ 0.28
VRK3-212ENST00000596814 OXER1Q8TDS5 423 aa16.83■□□□□ 0.28
VRK3-212ENST00000596814 VWA5AO00534 786 aa16.82■□□□□ 0.28
VRK3-212ENST00000596814 ZBED4O75132 1171 aa16.82■□□□□ 0.28
VRK3-212ENST00000596814 ICAM1P05362 532 aa16.82■□□□□ 0.28
VRK3-212ENST00000596814 CETPP11597 493 aa16.82■□□□□ 0.28
VRK3-212ENST00000596814 ADCY7P51828 1080 aa16.82■□□□□ 0.28
VRK3-212ENST00000596814 IRX3P78415 501 aaPredicted RBP16.82■□□□□ 0.28
VRK3-212ENST00000596814 PABPC4Q13310 644 aaKnown RBP eCLIP16.82■□□□□ 0.28
VRK3-212ENST00000596814 FAM173BQ6P4H8 233 aa16.82■□□□□ 0.28
VRK3-212ENST00000596814 RASAL3Q86YV0 1011 aa16.82■□□□□ 0.28
VRK3-212ENST00000596814 BICD2Q8TD16 824 aa16.82■□□□□ 0.28
VRK3-212ENST00000596814 TLL2Q9Y6L7 1015 aa16.82■□□□□ 0.28
VRK3-212ENST00000596814 SMCHD1A6NHR9 2005 aa16.82■□□□□ 0.28
VRK3-212ENST00000596814 SPDYE16A6NNV3 312 aaPredicted RBP16.82■□□□□ 0.28
VRK3-212ENST00000596814 TAL1P17542 331 aaPredicted RBP16.82■□□□□ 0.28
VRK3-212ENST00000596814 ZNF157P51786 506 aaPredicted RBP16.82■□□□□ 0.28
VRK3-212ENST00000596814 RGMBQ6NW40 437 aa16.82■□□□□ 0.28
VRK3-212ENST00000596814 CUL5Q93034 780 aa16.82■□□□□ 0.28
VRK3-212ENST00000596814 CHAMP1Q96JM3 812 aa16.82■□□□□ 0.28
VRK3-212ENST00000596814 HOXC10Q9NYD6 342 aa16.82■□□□□ 0.28
VRK3-212ENST00000596814 CCPG1Q9ULG6 757 aa16.82■□□□□ 0.28
VRK3-212ENST00000596814 RBBP6Q7Z6E9 1792 aaKnown RBP16.81■□□□□ 0.28
VRK3-212ENST00000596814 ZNF536O15090 1300 aa16.81■□□□□ 0.28
VRK3-212ENST00000596814 CCL15-CCL14A0A0B4J2E2 113 aa16.81■□□□□ 0.28
VRK3-212ENST00000596814 TMEM88BA6NKF7 163 aa16.81■□□□□ 0.28
VRK3-212ENST00000596814 DNM1Q05193 864 aaKnown RBP16.81■□□□□ 0.28
VRK3-212ENST00000596814 CCL15Q16663 113 aa16.81■□□□□ 0.28
VRK3-212ENST00000596814 MYSM1Q5VVJ2 828 aa16.81■□□□□ 0.28
VRK3-212ENST00000596814 GPAT2Q6NUI2 795 aa16.81■□□□□ 0.28
VRK3-212ENST00000596814 MS4A4AQ96JQ5 239 aa16.81■□□□□ 0.28
VRK3-212ENST00000596814 GLT8D2Q9H1C3 349 aa16.81■□□□□ 0.28
VRK3-212ENST00000596814 RIC8AQ9NPQ8 531 aa16.81■□□□□ 0.28
VRK3-212ENST00000596814 PNMA2Q9UL42 364 aa16.81■□□□□ 0.28
VRK3-212ENST00000596814 ABT1Q9ULW3 272 aaKnown RBP16.81■□□□□ 0.28
VRK3-212ENST00000596814 ADAMTS5Q9UNA0 930 aa16.81■□□□□ 0.28
VRK3-212ENST00000596814 ABCB11O95342 1321 aa16.81■□□□□ 0.28
VRK3-212ENST00000596814 M0R2N6 131 aa16.8■□□□□ 0.28
VRK3-212ENST00000596814 ADAMTS3O15072 1205 aa16.8■□□□□ 0.28
VRK3-212ENST00000596814 NCLP19338 710 aaKnown RBP16.8■□□□□ 0.28
VRK3-212ENST00000596814 KRT85P78386 507 aa16.8■□□□□ 0.28
VRK3-212ENST00000596814 CPXCR1Q8N123 301 aa16.8■□□□□ 0.28
VRK3-212ENST00000596814 REXO1Q8N1G1 1221 aaKnown RBP16.8■□□□□ 0.28
VRK3-212ENST00000596814 REPS2Q8NFH8 660 aa16.8■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 10 ms