RNA–Protein interactions for RNA: ENST00000594948.5

VRK3-209, Transcript of vaccinia related kinase 3, humanhuman

APPRIS P3 TSL 2 BASIC

Gene VRK3, Length 1,847 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-209ENST00000594948 CCDC87Q9NVE4 849 aa14.85□□□□□ -0.03
VRK3-209ENST00000594948 KBTBD4Q9NVX7 518 aa14.85□□□□□ -0.03
VRK3-209ENST00000594948 ZNHIT6Q9NWK9 470 aaKnown RBP14.85□□□□□ -0.03
VRK3-209ENST00000594948 HPCAL4Q9UM19 191 aa14.85□□□□□ -0.03
VRK3-209ENST00000594948 PCDHA4Q9UN74 947 aa14.85□□□□□ -0.03
VRK3-209ENST00000594948 COL4A1P02462 1669 aa14.84□□□□□ -0.03
VRK3-209ENST00000594948 PRPHP41219 470 aa14.84□□□□□ -0.03
VRK3-209ENST00000594948 ZBED6P86452 979 aa14.84□□□□□ -0.03
VRK3-209ENST00000594948 COBLL1Q53SF7 1204 aa14.84□□□□□ -0.03
VRK3-209ENST00000594948 NAALADL2Q58DX5 795 aa14.84□□□□□ -0.03
VRK3-209ENST00000594948 TTI2Q6NXR4 508 aa14.84□□□□□ -0.03
VRK3-209ENST00000594948 DTHD1Q6ZMT9 781 aa14.84□□□□□ -0.03
VRK3-209ENST00000594948 COG1Q8WTW3 980 aa14.84□□□□□ -0.03
VRK3-209ENST00000594948 TSGA10Q9BZW7 698 aa14.84□□□□□ -0.03
VRK3-209ENST00000594948 ATP8A2Q9NTI2 1148 aa14.84□□□□□ -0.03
VRK3-209ENST00000594948 ARPP21Q9UBL0 812 aaPredicted RBP14.84□□□□□ -0.03
VRK3-209ENST00000594948 BICDL2A1A5D9 508 aa14.83□□□□□ -0.04
VRK3-209ENST00000594948 M0R2N6 131 aa14.83□□□□□ -0.04
VRK3-209ENST00000594948 COBLO75128 1261 aa14.83□□□□□ -0.04
VRK3-209ENST00000594948 CAMTA2O94983 1202 aa14.83□□□□□ -0.04
VRK3-209ENST00000594948 IPO7O95373 1038 aaKnown RBP14.83□□□□□ -0.04
VRK3-209ENST00000594948 SYF2O95926 243 aaKnown RBP14.83□□□□□ -0.04
VRK3-209ENST00000594948 TFRCP02786 760 aaKnown RBP14.83□□□□□ -0.04
VRK3-209ENST00000594948 ATP1A1P05023 1023 aaKnown RBP14.83□□□□□ -0.04
VRK3-209ENST00000594948 DYNLL1P63167 89 aaKnown RBP14.83□□□□□ -0.04
VRK3-209ENST00000594948 CAVIN4Q5BKX8 364 aa14.83□□□□□ -0.04
VRK3-209ENST00000594948 INTS5Q6P9B9 1019 aaKnown RBP14.83□□□□□ -0.04
VRK3-209ENST00000594948 ZNF572Q7Z3I7 529 aaPredicted RBP14.83□□□□□ -0.04
VRK3-209ENST00000594948 KIAA1328Q86T90 577 aa14.83□□□□□ -0.04
VRK3-209ENST00000594948 FNBP4Q8N3X1 1017 aaPredicted RBP14.83□□□□□ -0.04
VRK3-209ENST00000594948 AFAP1L1Q8TED9 768 aa14.83□□□□□ -0.04
VRK3-209ENST00000594948 ANKS1AQ92625 1134 aa14.83□□□□□ -0.04
VRK3-209ENST00000594948 CCDC47Q96A33 483 aaKnown RBP14.83□□□□□ -0.04
VRK3-209ENST00000594948 TRIM47Q96LD4 638 aa14.83□□□□□ -0.04
VRK3-209ENST00000594948 TRERF1Q96PN7 1200 aa14.83□□□□□ -0.04
VRK3-209ENST00000594948 MMS19Q96T76 1030 aa14.83□□□□□ -0.04
VRK3-209ENST00000594948 ZNF831Q5JPB2 1677 aa14.83□□□□□ -0.04
VRK3-209ENST00000594948 ZC3H4Q9UPT8 1303 aaKnown RBP14.83□□□□□ -0.04
VRK3-209ENST00000594948 MYH14Q7Z406 1995 aaKnown RBP14.83□□□□□ -0.04
VRK3-209ENST00000594948 COL5A3P25940 1745 aaPredicted RBP14.83□□□□□ -0.04
VRK3-209ENST00000594948 CYP2D7A0A087X1C5 515 aa14.82□□□□□ -0.04
VRK3-209ENST00000594948 USP17L12C9JPN9 530 aa14.82□□□□□ -0.04
VRK3-209ENST00000594948 USP17L21D6R901 530 aa14.82□□□□□ -0.04
VRK3-209ENST00000594948 SMIM22K7EJ46 135 aa14.82□□□□□ -0.04
VRK3-209ENST00000594948 RNF40O75150 1001 aa14.82□□□□□ -0.04
VRK3-209ENST00000594948 CCNE1P24864 410 aa14.82□□□□□ -0.04
VRK3-209ENST00000594948 HOXA7P31268 230 aaPredicted RBP14.82□□□□□ -0.04
VRK3-209ENST00000594948 GNAQP50148 359 aa14.82□□□□□ -0.04
VRK3-209ENST00000594948 SF3B2Q13435 895 aaKnown RBP14.82□□□□□ -0.04
VRK3-209ENST00000594948 AK8Q96MA6 479 aa14.82□□□□□ -0.04
VRK3-209ENST00000594948 CRNKL1Q9BZJ0 848 aaKnown RBP14.82□□□□□ -0.04
VRK3-209ENST00000594948 FAM204AQ9H8W3 233 aa14.82□□□□□ -0.04
VRK3-209ENST00000594948 TRIM10Q9UDY6 481 aa14.82□□□□□ -0.04
VRK3-209ENST00000594948 TRIM49BA6NDI0 452 aa14.82□□□□□ -0.04
VRK3-209ENST00000594948 PRLRP16471 622 aa14.82□□□□□ -0.04
VRK3-209ENST00000594948 CCDC178Q5BJE1 867 aa14.82□□□□□ -0.04
VRK3-209ENST00000594948 LRRC31Q6UY01 552 aa14.82□□□□□ -0.04
VRK3-209ENST00000594948 ERGIC2Q96RQ1 377 aa14.82□□□□□ -0.04
VRK3-209ENST00000594948 EFCC1Q9HA90 598 aa14.82□□□□□ -0.04
VRK3-209ENST00000594948 SLAIN2Q9P270 581 aa14.82□□□□□ -0.04
VRK3-209ENST00000594948 BAZ2BQ9UIF8 2168 aaKnown RBP14.82□□□□□ -0.04
VRK3-209ENST00000594948 TAF1P21675 1872 aa14.81□□□□□ -0.04
VRK3-209ENST00000594948 PPFIA4O75335 1185 aa14.81□□□□□ -0.04
VRK3-209ENST00000594948 HNRNPH3P31942 346 aaKnown RBP14.81□□□□□ -0.04
VRK3-209ENST00000594948 GYG1P46976 350 aa14.81□□□□□ -0.04
VRK3-209ENST00000594948 VAV2P52735 878 aa14.81□□□□□ -0.04
VRK3-209ENST00000594948 CCDC70Q6NSX1 233 aa14.81□□□□□ -0.04
VRK3-209ENST00000594948 CCNI2Q6ZMN8 369 aaPredicted RBP14.81□□□□□ -0.04
VRK3-209ENST00000594948 DGKHQ86XP1 1220 aa14.81□□□□□ -0.04
VRK3-209ENST00000594948 ANKRD18AQ8IVF6 992 aa14.81□□□□□ -0.04
VRK3-209ENST00000594948 ZSCAN29Q8IWY8 852 aaPredicted RBP14.81□□□□□ -0.04
VRK3-209ENST00000594948 MMGT1Q8N4V1 131 aa14.81□□□□□ -0.04
VRK3-209ENST00000594948 ZNF384Q8TF68 577 aa14.81□□□□□ -0.04
VRK3-209ENST00000594948 P2RX5Q93086 422 aa14.81□□□□□ -0.04
VRK3-209ENST00000594948 DUSP9Q99956 384 aaKnown RBP14.81□□□□□ -0.04
VRK3-209ENST00000594948 TUBGCP2Q9BSJ2 902 aa14.81□□□□□ -0.04
VRK3-209ENST00000594948 BSDC1Q9NW68 430 aaPredicted RBP14.81□□□□□ -0.04
VRK3-209ENST00000594948 LCMT1Q9UIC8 334 aa14.81□□□□□ -0.04
VRK3-209ENST00000594948 CCDC194A0A1B0GVG4 234 aa14.8□□□□□ -0.04
VRK3-209ENST00000594948 SHOX2O60902 331 aaPredicted RBP14.8□□□□□ -0.04
VRK3-209ENST00000594948 UBA7P41226 1012 aa14.8□□□□□ -0.04
VRK3-209ENST00000594948 MAGEA9P43362 315 aa14.8□□□□□ -0.04
VRK3-209ENST00000594948 PMS1P54277 932 aaKnown RBP14.8□□□□□ -0.04
VRK3-209ENST00000594948 GRM4Q14833 912 aa14.8□□□□□ -0.04
VRK3-209ENST00000594948 SF3B3Q15393 1217 aaKnown RBP14.8□□□□□ -0.04
VRK3-209ENST00000594948 AMOTL1Q8IY63 956 aa14.8□□□□□ -0.04
VRK3-209ENST00000594948 NSUN4Q96CB9 384 aaKnown RBP14.8□□□□□ -0.04
VRK3-209ENST00000594948 TRIM34Q9BYJ4 488 aa14.8□□□□□ -0.04
VRK3-209ENST00000594948 NHEJ1Q9H9Q4 299 aaPredicted RBP14.8□□□□□ -0.04
VRK3-209ENST00000594948 DCP1AQ9NPI6 582 aaPredicted RBP14.8□□□□□ -0.04
VRK3-209ENST00000594948 HDAC6Q9UBN7 1215 aa14.8□□□□□ -0.04
VRK3-209ENST00000594948 FAM205AQ6ZU69 1335 aa14.8□□□□□ -0.04
VRK3-209ENST00000594948 NAV1Q8NEY1 1877 aa14.8□□□□□ -0.04
VRK3-209ENST00000594948 EXOC5O00471 708 aa14.8□□□□□ -0.04
VRK3-209ENST00000594948 ENC1O14682 589 aa14.8□□□□□ -0.04
VRK3-209ENST00000594948 ADAMTS2O95450 1211 aa14.8□□□□□ -0.04
VRK3-209ENST00000594948 TNNT3P45378 269 aaPredicted RBP14.8□□□□□ -0.04
VRK3-209ENST00000594948 RCSD1Q6JBY9 416 aa14.8□□□□□ -0.04
VRK3-209ENST00000594948 C10orf67Q8IYJ2 551 aa14.8□□□□□ -0.04
VRK3-209ENST00000594948 CSGALNACT2Q8N6G5 542 aa14.8□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 13 ms