RNA–Protein interactions for RNA: ENST00000594504.5

UPF1-203, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 559 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-203ENST00000594504 PDE4AP27815 886 aa14.81□□□□□ -0.04
UPF1-203ENST00000594504 ACLYP53396 1101 aa14.81□□□□□ -0.04
UPF1-203ENST00000594504 EPHB4P54760 987 aa14.81□□□□□ -0.04
UPF1-203ENST00000594504 CNTN2Q02246 1040 aa14.81□□□□□ -0.04
UPF1-203ENST00000594504 ACVR2BQ13705 512 aa14.81□□□□□ -0.04
UPF1-203ENST00000594504 KCNA10Q16322 511 aa14.81□□□□□ -0.04
UPF1-203ENST00000594504 VPS53Q5VIR6 699 aa14.81□□□□□ -0.04
UPF1-203ENST00000594504 RASGRP2Q7LDG7 609 aa14.81□□□□□ -0.04
UPF1-203ENST00000594504 TICAM2Q86XR7 235 aa14.81□□□□□ -0.04
UPF1-203ENST00000594504 KLHDC9Q8NEP7 349 aa14.81□□□□□ -0.04
UPF1-203ENST00000594504 AGBL1Q96MI9 1066 aa14.81□□□□□ -0.04
UPF1-203ENST00000594504 IL17RBQ9NRM6 502 aa14.81□□□□□ -0.04
UPF1-203ENST00000594504 CDKN2AIPQ9NXV6 580 aaPredicted RBP14.81□□□□□ -0.04
UPF1-203ENST00000594504 MTMR7Q9Y216 660 aa14.81□□□□□ -0.04
UPF1-203ENST00000594504 MCM3APO60318 1980 aa14.81□□□□□ -0.04
UPF1-203ENST00000594504 SYNRGQ9UMZ2 1314 aa14.81□□□□□ -0.04
UPF1-203ENST00000594504 FAAP100Q0VG06 881 aa14.8□□□□□ -0.04
UPF1-203ENST00000594504 CCSAPQ6IQ19 270 aaPredicted RBP14.8□□□□□ -0.04
UPF1-203ENST00000594504 KCTD1Q719H9 257 aa14.8□□□□□ -0.04
UPF1-203ENST00000594504 MSL3Q8N5Y2 521 aaKnown RBP14.8□□□□□ -0.04
UPF1-203ENST00000594504 CHST13Q8NET6 341 aa14.8□□□□□ -0.04
UPF1-203ENST00000594504 CCDC136Q96JN2 1154 aa14.8□□□□□ -0.04
UPF1-203ENST00000594504 STARD7Q9NQZ5 370 aa14.8□□□□□ -0.04
UPF1-203ENST00000594504 DDX49Q9Y6V7 483 aaKnown RBP14.8□□□□□ -0.04
UPF1-203ENST00000594504 ZNF536O15090 1300 aa14.8□□□□□ -0.04
UPF1-203ENST00000594504 SYNGAP1Q96PV0 1343 aa14.8□□□□□ -0.04
UPF1-203ENST00000594504 TRIM6-TRIM34B2RNG4 842 aa14.79□□□□□ -0.04
UPF1-203ENST00000594504 SLC3A2P08195 630 aaKnown RBP14.79□□□□□ -0.04
UPF1-203ENST00000594504 SLC1A4P43007 532 aa14.79□□□□□ -0.04
UPF1-203ENST00000594504 IKQ13123 557 aaPredicted RBP14.79□□□□□ -0.04
UPF1-203ENST00000594504 CCDC144BQ3MJ40 725 aa14.79□□□□□ -0.04
UPF1-203ENST00000594504 ERICH6BQ5W0A0 696 aa14.79□□□□□ -0.04
UPF1-203ENST00000594504 FAM109BQ6ICB4 259 aaPredicted RBP14.79□□□□□ -0.04
UPF1-203ENST00000594504 CCDC174Q6PII3 467 aa14.79□□□□□ -0.04
UPF1-203ENST00000594504 ARMCX2Q7L311 632 aa14.79□□□□□ -0.04
UPF1-203ENST00000594504 ZNF467Q7Z7K2 595 aaPredicted RBP14.79□□□□□ -0.04
UPF1-203ENST00000594504 CCDC144CPQ8IYA2 1237 aa14.79□□□□□ -0.04
UPF1-203ENST00000594504 STAG1Q8WVM7 1258 aa14.79□□□□□ -0.04
UPF1-203ENST00000594504 PLIN4Q96Q06 1357 aa14.79□□□□□ -0.04
UPF1-203ENST00000594504 TSEN34Q9BSV6 310 aaKnown RBP14.79□□□□□ -0.04
UPF1-203ENST00000594504 TMEM39AQ9NV64 488 aa14.79□□□□□ -0.04
UPF1-203ENST00000594504 DDX52Q9Y2R4 599 aaKnown RBP eCLIP14.79□□□□□ -0.04
UPF1-203ENST00000594504 C11orf97A0A1B0GVM6 126 aaPredicted RBP14.78□□□□□ -0.04
UPF1-203ENST00000594504 SOWAHBA6NEL2 793 aa14.78□□□□□ -0.04
UPF1-203ENST00000594504 TSPY2A6NKD2 308 aa14.78□□□□□ -0.04
UPF1-203ENST00000594504 KIAA0355O15063 1070 aa14.78□□□□□ -0.04
UPF1-203ENST00000594504 DUSP11O75319 330 aaKnown RBP14.78□□□□□ -0.04
UPF1-203ENST00000594504 C6orf222P0C671 652 aaPredicted RBP14.78□□□□□ -0.04
UPF1-203ENST00000594504 RAG1P15918 1043 aa14.78□□□□□ -0.04
UPF1-203ENST00000594504 PTGS1P23219 599 aa14.78□□□□□ -0.04
UPF1-203ENST00000594504 STAT2P52630 851 aa14.78□□□□□ -0.04
UPF1-203ENST00000594504 OAZ1P54368 228 aa14.78□□□□□ -0.04
UPF1-203ENST00000594504 ZNF697Q5TEC3 545 aa14.78□□□□□ -0.04
UPF1-203ENST00000594504 RCSD1Q6JBY9 416 aa14.78□□□□□ -0.04
UPF1-203ENST00000594504 DHX30Q7L2E3 1194 aaKnown RBP eCLIP14.78□□□□□ -0.04
UPF1-203ENST00000594504 CHURC1Q8WUH1 139 aa14.78□□□□□ -0.04
UPF1-203ENST00000594504 RILPL2Q969X0 211 aa14.78□□□□□ -0.04
UPF1-203ENST00000594504 KATNBL1Q9H079 304 aa14.78□□□□□ -0.04
UPF1-203ENST00000594504 ABHD16BQ9H3Z7 469 aa14.78□□□□□ -0.04
UPF1-203ENST00000594504 FBXO40Q9UH90 709 aa14.78□□□□□ -0.04
UPF1-203ENST00000594504 SYNPO2Q9UMS6 1093 aa14.78□□□□□ -0.04
UPF1-203ENST00000594504 STX8Q9UNK0 236 aa14.78□□□□□ -0.04
UPF1-203ENST00000594504 RANBP6O60518 1105 aaKnown RBP14.77□□□□□ -0.05
UPF1-203ENST00000594504 ASGR1P07306 291 aa14.77□□□□□ -0.05
UPF1-203ENST00000594504 ALAS1P13196 640 aa14.77□□□□□ -0.05
UPF1-203ENST00000594504 MUM1L1Q5H9M0 696 aa14.77□□□□□ -0.05
UPF1-203ENST00000594504 FAM160B2Q86V87 743 aa14.77□□□□□ -0.05
UPF1-203ENST00000594504 FAM133AQ8N9E0 248 aa14.77□□□□□ -0.05
UPF1-203ENST00000594504 VTI1AQ96AJ9 217 aa14.77□□□□□ -0.05
UPF1-203ENST00000594504 GMCL1Q96IK5 515 aa14.77□□□□□ -0.05
UPF1-203ENST00000594504 TRERF1Q96PN7 1200 aa14.77□□□□□ -0.05
UPF1-203ENST00000594504 PURBQ96QR8 312 aaKnown RBP14.77□□□□□ -0.05
UPF1-203ENST00000594504 CDX2Q99626 313 aaPredicted RBP14.77□□□□□ -0.05
UPF1-203ENST00000594504 SEMA6BQ9H3T3 888 aa14.77□□□□□ -0.05
UPF1-203ENST00000594504 ACAD9Q9H845 621 aa14.77□□□□□ -0.05
UPF1-203ENST00000594504 A1CFQ9NQ94 594 aaKnown RBP14.77□□□□□ -0.05
UPF1-203ENST00000594504 RNF146Q9NTX7 359 aa14.77□□□□□ -0.05
UPF1-203ENST00000594504 MOXD2PA6NHM9 499 aa14.76□□□□□ -0.05
UPF1-203ENST00000594504 DCDC2CA8MYV0 355 aa14.76□□□□□ -0.05
UPF1-203ENST00000594504 CTAGE5O15320 804 aa14.76□□□□□ -0.05
UPF1-203ENST00000594504 GJA9P57773 515 aa14.76□□□□□ -0.05
UPF1-203ENST00000594504 BEX3Q00994 111 aa14.76□□□□□ -0.05
UPF1-203ENST00000594504 GNASQ5JWF2 1037 aa14.76□□□□□ -0.05
UPF1-203ENST00000594504 TMEM63BQ5T3F8 832 aa14.76□□□□□ -0.05
UPF1-203ENST00000594504 TTC22Q5TAA0 569 aa14.76□□□□□ -0.05
UPF1-203ENST00000594504 TTBK2Q6IQ55 1244 aa14.76□□□□□ -0.05
UPF1-203ENST00000594504 ANKRD33Q7Z3H0 272 aa14.76□□□□□ -0.05
UPF1-203ENST00000594504 NUP133Q8WUM0 1156 aa14.76□□□□□ -0.05
UPF1-203ENST00000594504 FAM227BQ96M60 508 aa14.76□□□□□ -0.05
UPF1-203ENST00000594504 TOX2Q96NM4 488 aa14.76□□□□□ -0.05
UPF1-203ENST00000594504 TTYH1Q9H313 450 aaPredicted RBP14.76□□□□□ -0.05
UPF1-203ENST00000594504 PRR12Q9ULL5 1215 aa14.76□□□□□ -0.05
UPF1-203ENST00000594504 LAMA3Q16787 3333 aa14.76□□□□□ -0.05
UPF1-203ENST00000594504 ASTN1O14525 1302 aa14.75□□□□□ -0.05
UPF1-203ENST00000594504 FDX1P10109 184 aa14.75□□□□□ -0.05
UPF1-203ENST00000594504 SLC16A2P36021 539 aa14.75□□□□□ -0.05
UPF1-203ENST00000594504 CDK7P50613 346 aa14.75□□□□□ -0.05
UPF1-203ENST00000594504 FPGSQ05932 587 aa14.75□□□□□ -0.05
UPF1-203ENST00000594504 RRP12Q5JTH9 1297 aaKnown RBP14.75□□□□□ -0.05
UPF1-203ENST00000594504 EEPD1Q7L9B9 569 aa14.75□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 57.4 ms