RNA–Protein interactions for RNA: ENST00000593597.1

USE1-203, Transcript of unconventional SNARE in the ER 1, humanhuman

TSL 2

Gene USE1, Length 587 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USE1-203ENST00000593597 GPATCH3Q96I76 525 aa12.71□□□□□ -0.37
USE1-203ENST00000593597 UPF3AQ9H1J1 476 aaKnown RBP12.71□□□□□ -0.37
USE1-203ENST00000593597 FEM1BQ9UK73 627 aa12.71□□□□□ -0.37
USE1-203ENST00000593597 SYNPO2Q9UMS6 1093 aa12.71□□□□□ -0.37
USE1-203ENST00000593597 CNPY2Q9Y2B0 182 aa12.71□□□□□ -0.37
USE1-203ENST00000593597 SOWAHBA6NEL2 793 aa12.7□□□□□ -0.38
USE1-203ENST00000593597 ZBED4O75132 1171 aa12.7□□□□□ -0.38
USE1-203ENST00000593597 BMP3P12645 472 aa12.7□□□□□ -0.38
USE1-203ENST00000593597 MX1P20591 662 aa12.7□□□□□ -0.38
USE1-203ENST00000593597 CST5P28325 142 aaPredicted RBP12.7□□□□□ -0.38
USE1-203ENST00000593597 SNAP25P60880 206 aa12.7□□□□□ -0.38
USE1-203ENST00000593597 ACVR2BQ13705 512 aa12.7□□□□□ -0.38
USE1-203ENST00000593597 TMEM63BQ5T3F8 832 aa12.7□□□□□ -0.38
USE1-203ENST00000593597 ZNF697Q5TEC3 545 aa12.7□□□□□ -0.38
USE1-203ENST00000593597 ARMCX2Q7L311 632 aa12.7□□□□□ -0.38
USE1-203ENST00000593597 CCDC144CPQ8IYA2 1237 aa12.7□□□□□ -0.38
USE1-203ENST00000593597 ZNF444Q8N0Y2 327 aaPredicted RBP12.7□□□□□ -0.38
USE1-203ENST00000593597 FAM133AQ8N9E0 248 aa12.7□□□□□ -0.38
USE1-203ENST00000593597 DDX11Q96FC9 970 aa12.7□□□□□ -0.38
USE1-203ENST00000593597 AGBL1Q96MI9 1066 aa12.7□□□□□ -0.38
USE1-203ENST00000593597 CDX2Q99626 313 aaPredicted RBP12.7□□□□□ -0.38
USE1-203ENST00000593597 TSEN34Q9BSV6 310 aaKnown RBP12.7□□□□□ -0.38
USE1-203ENST00000593597 FSD1Q9BTV5 496 aa12.7□□□□□ -0.38
USE1-203ENST00000593597 SEMA6BQ9H3T3 888 aa12.7□□□□□ -0.38
USE1-203ENST00000593597 A1CFQ9NQ94 594 aaKnown RBP12.7□□□□□ -0.38
USE1-203ENST00000593597 HOMER2Q9NSB8 354 aa12.7□□□□□ -0.38
USE1-203ENST00000593597 TBX21Q9UL17 535 aa12.7□□□□□ -0.38
USE1-203ENST00000593597 FAM184BQ9ULE4 1060 aa12.7□□□□□ -0.38
USE1-203ENST00000593597 TMEM232C9JQI7 657 aa12.69□□□□□ -0.38
USE1-203ENST00000593597 DUSP11O75319 330 aaKnown RBP12.69□□□□□ -0.38
USE1-203ENST00000593597 ASGR1P07306 291 aa12.69□□□□□ -0.38
USE1-203ENST00000593597 TSPY3P0CV98 308 aa12.69□□□□□ -0.38
USE1-203ENST00000593597 TSPY8P0CW00 308 aa12.69□□□□□ -0.38
USE1-203ENST00000593597 NOVP48745 357 aa12.69□□□□□ -0.38
USE1-203ENST00000593597 CDK7P50613 346 aa12.69□□□□□ -0.38
USE1-203ENST00000593597 OAZ1P54368 228 aa12.69□□□□□ -0.38
USE1-203ENST00000593597 SMAD3P84022 425 aaKnown RBP12.69□□□□□ -0.38
USE1-203ENST00000593597 CCDC144BQ3MJ40 725 aa12.69□□□□□ -0.38
USE1-203ENST00000593597 C16orf59Q7L2K0 433 aa12.69□□□□□ -0.38
USE1-203ENST00000593597 CHST13Q8NET6 341 aa12.69□□□□□ -0.38
USE1-203ENST00000593597 MYLIPQ8WY64 445 aa12.69□□□□□ -0.38
USE1-203ENST00000593597 GMCL1Q96IK5 515 aa12.69□□□□□ -0.38
USE1-203ENST00000593597 COL25A1Q9BXS0 654 aaPredicted RBP12.69□□□□□ -0.38
USE1-203ENST00000593597 NAPBQ9H115 298 aa12.69□□□□□ -0.38
USE1-203ENST00000593597 STARD7Q9NQZ5 370 aa12.69□□□□□ -0.38
USE1-203ENST00000593597 SCN5AQ14524 2016 aa12.69□□□□□ -0.38
USE1-203ENST00000593597 MUC3AQ02505 3323 aa12.68□□□□□ -0.38
USE1-203ENST00000593597 TRANK1O15050 2925 aa12.68□□□□□ -0.38
USE1-203ENST00000593597 MOXD2PA6NHM9 499 aa12.68□□□□□ -0.38
USE1-203ENST00000593597 MCCP23508 829 aa12.68□□□□□ -0.38
USE1-203ENST00000593597 GJA9P57773 515 aa12.68□□□□□ -0.38
USE1-203ENST00000593597 NKX3-2P78367 333 aa12.68□□□□□ -0.38
USE1-203ENST00000593597 BEX3Q00994 111 aa12.68□□□□□ -0.38
USE1-203ENST00000593597 MUM1L1Q5H9M0 696 aa12.68□□□□□ -0.38
USE1-203ENST00000593597 KCTD1Q719H9 257 aa12.68□□□□□ -0.38
USE1-203ENST00000593597 PHF6Q8IWS0 365 aaKnown RBP eCLIP12.68□□□□□ -0.38
USE1-203ENST00000593597 ANKRD35Q8N283 1001 aa12.68□□□□□ -0.38
USE1-203ENST00000593597 TOX2Q96NM4 488 aa12.68□□□□□ -0.38
USE1-203ENST00000593597 PURBQ96QR8 312 aaKnown RBP12.68□□□□□ -0.38
USE1-203ENST00000593597 RNF146Q9NTX7 359 aa12.68□□□□□ -0.38
USE1-203ENST00000593597 C6orf222P0C671 652 aaPredicted RBP12.67□□□□□ -0.38
USE1-203ENST00000593597 RAG1P15918 1043 aa12.67□□□□□ -0.38
USE1-203ENST00000593597 STAT2P52630 851 aa12.67□□□□□ -0.38
USE1-203ENST00000593597 FPGSQ05932 587 aa12.67□□□□□ -0.38
USE1-203ENST00000593597 PDE4BQ07343 736 aa12.67□□□□□ -0.38
USE1-203ENST00000593597 FAM126BQ8IXS8 530 aa12.67□□□□□ -0.38
USE1-203ENST00000593597 STAG1Q8WVM7 1258 aa12.67□□□□□ -0.38
USE1-203ENST00000593597 RNPC3Q96LT9 517 aaKnown RBP12.67□□□□□ -0.38
USE1-203ENST00000593597 CRBNQ96SW2 442 aa12.67□□□□□ -0.38
USE1-203ENST00000593597 BUD13Q9BRD0 619 aaKnown RBP eCLIP12.67□□□□□ -0.38
USE1-203ENST00000593597 ABHD16BQ9H3Z7 469 aa12.67□□□□□ -0.38
USE1-203ENST00000593597 ACAD9Q9H845 621 aa12.67□□□□□ -0.38
USE1-203ENST00000593597 TMEM39AQ9NV64 488 aa12.67□□□□□ -0.38
USE1-203ENST00000593597 FBXO40Q9UH90 709 aa12.67□□□□□ -0.38
USE1-203ENST00000593597 ANAPC4Q9UJX5 808 aa12.67□□□□□ -0.38
USE1-203ENST00000593597 PRR12Q9ULL5 1215 aa12.67□□□□□ -0.38
USE1-203ENST00000593597 GNEQ9Y223 722 aaKnown RBP12.67□□□□□ -0.38
USE1-203ENST00000593597 GRIN2DO15399 1336 aa12.66□□□□□ -0.38
USE1-203ENST00000593597 ELP1O95163 1332 aa12.66□□□□□ -0.38
USE1-203ENST00000593597 TTC28Q96AY4 2481 aa12.66□□□□□ -0.38
USE1-203ENST00000593597 TANC1Q9C0D5 1861 aa12.66□□□□□ -0.38
USE1-203ENST00000593597 A0A0D9SFI3 127 aa12.66□□□□□ -0.38
USE1-203ENST00000593597 ERC2O15083 957 aa12.66□□□□□ -0.38
USE1-203ENST00000593597 TIMP1P01033 207 aa12.66□□□□□ -0.38
USE1-203ENST00000593597 FGRP09769 529 aa12.66□□□□□ -0.38
USE1-203ENST00000593597 SLC1A4P43007 532 aa12.66□□□□□ -0.38
USE1-203ENST00000593597 RRP1P56182 461 aaKnown RBP12.66□□□□□ -0.38
USE1-203ENST00000593597 RASIP1Q5U651 963 aa12.66□□□□□ -0.38
USE1-203ENST00000593597 TTBK2Q6IQ55 1244 aa12.66□□□□□ -0.38
USE1-203ENST00000593597 CCDC174Q6PII3 467 aa12.66□□□□□ -0.38
USE1-203ENST00000593597 FAM227BQ96M60 508 aa12.66□□□□□ -0.38
USE1-203ENST00000593597 NACAP1Q9BZK3 213 aa12.66□□□□□ -0.38
USE1-203ENST00000593597 ZNF287Q9HBT7 754 aa12.66□□□□□ -0.38
USE1-203ENST00000593597 PDGFCQ9NRA1 345 aa12.66□□□□□ -0.38
USE1-203ENST00000593597 CYP39A1Q9NYL5 469 aa12.66□□□□□ -0.38
USE1-203ENST00000593597 PTPRSQ13332 1948 aa12.66□□□□□ -0.38
USE1-203ENST00000593597 UMODL1Q5DID0 1318 aa12.65□□□□□ -0.38
USE1-203ENST00000593597 SCN10AQ9Y5Y9 1956 aa12.65□□□□□ -0.38
USE1-203ENST00000593597 MYH6P13533 1939 aa12.65□□□□□ -0.38
USE1-203ENST00000593597 ARVCFO00192 962 aa12.65□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms