RNA–Protein interactions for RNA: ENST00000591849.5

BRCA1-227, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best) BASIC

Gene BRCA1, Length 563 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-227ENST00000591849 COBLO75128 1261 aa11.77□□□□□ -0.53
BRCA1-227ENST00000591849 SGPL1O95470 568 aa11.77□□□□□ -0.53
BRCA1-227ENST00000591849 HOXC6P09630 235 aa11.77□□□□□ -0.53
BRCA1-227ENST00000591849 CYP2C19P33261 490 aa11.77□□□□□ -0.53
BRCA1-227ENST00000591849 MCM5P33992 734 aa11.77□□□□□ -0.53
BRCA1-227ENST00000591849 GJA8P48165 433 aa11.77□□□□□ -0.53
BRCA1-227ENST00000591849 CACNB2Q08289 660 aaPredicted RBP11.77□□□□□ -0.53
BRCA1-227ENST00000591849 BTNL9Q6UXG8 535 aa11.77□□□□□ -0.53
BRCA1-227ENST00000591849 CATIPQ7Z7H3 387 aa11.77□□□□□ -0.53
BRCA1-227ENST00000591849 U2AF1L4Q8WU68 220 aaKnown RBP11.77□□□□□ -0.53
BRCA1-227ENST00000591849 TRERF1Q96PN7 1200 aa11.77□□□□□ -0.53
BRCA1-227ENST00000591849 ACAD9Q9H845 621 aa11.77□□□□□ -0.53
BRCA1-227ENST00000591849 RNF146Q9NTX7 359 aa11.77□□□□□ -0.53
BRCA1-227ENST00000591849 PNMA2Q9UL42 364 aa11.77□□□□□ -0.53
BRCA1-227ENST00000591849 RIPK3Q9Y572 518 aa11.77□□□□□ -0.53
BRCA1-227ENST00000591849 CCDC69A6NI79 296 aa11.76□□□□□ -0.53
BRCA1-227ENST00000591849 POTEB2H3BUK9 544 aa11.76□□□□□ -0.53
BRCA1-227ENST00000591849 PRC1O43663 620 aa11.76□□□□□ -0.53
BRCA1-227ENST00000591849 REC8O95072 547 aa11.76□□□□□ -0.53
BRCA1-227ENST00000591849 CAPN2P17655 700 aa11.76□□□□□ -0.53
BRCA1-227ENST00000591849 OLFML2BQ68BL8 750 aa11.76□□□□□ -0.53
BRCA1-227ENST00000591849 STOX1Q6ZVD7 989 aa11.76□□□□□ -0.53
BRCA1-227ENST00000591849 TMTC2Q8N394 836 aa11.76□□□□□ -0.53
BRCA1-227ENST00000591849 FLRT1Q9NZU1 646 aa11.76□□□□□ -0.53
BRCA1-227ENST00000591849 ICAM1P05362 532 aa11.75□□□□□ -0.53
BRCA1-227ENST00000591849 SNHG28P0DPA3 235 aa11.75□□□□□ -0.53
BRCA1-227ENST00000591849 CCND3P30281 292 aaPredicted RBP11.75□□□□□ -0.53
BRCA1-227ENST00000591849 FGD1P98174 961 aa11.75□□□□□ -0.53
BRCA1-227ENST00000591849 KRT32Q14532 448 aa11.75□□□□□ -0.53
BRCA1-227ENST00000591849 NECTIN1Q15223 517 aa11.75□□□□□ -0.53
BRCA1-227ENST00000591849 SEC23AQ15436 765 aa11.75□□□□□ -0.53
BRCA1-227ENST00000591849 NSMFQ6X4W1 530 aa11.75□□□□□ -0.53
BRCA1-227ENST00000591849 SYNE3Q6ZMZ3 975 aa11.75□□□□□ -0.53
BRCA1-227ENST00000591849 NUP133Q8WUM0 1156 aa11.75□□□□□ -0.53
BRCA1-227ENST00000591849 MAML3Q96JK9 1138 aa11.75□□□□□ -0.53
BRCA1-227ENST00000591849 RANBP17Q9H2T7 1088 aaKnown RBP11.75□□□□□ -0.53
BRCA1-227ENST00000591849 CNPY2Q9Y2B0 182 aa11.75□□□□□ -0.53
BRCA1-227ENST00000591849 DIS3Q9Y2L1 958 aaKnown RBP11.75□□□□□ -0.53
BRCA1-227ENST00000591849 TAF6LQ9Y6J9 622 aa11.75□□□□□ -0.53
BRCA1-227ENST00000591849 GREB1LQ9C091 1923 aaPredicted RBP11.75□□□□□ -0.53
BRCA1-227ENST00000591849 TRIOBPQ9H2D6 2365 aa11.75□□□□□ -0.53
BRCA1-227ENST00000591849 KLRF2D3W0D1 207 aa11.74□□□□□ -0.53
BRCA1-227ENST00000591849 FARP2O94887 1054 aaPredicted RBP11.74□□□□□ -0.53
BRCA1-227ENST00000591849 MYCNP04198 464 aaPredicted RBP11.74□□□□□ -0.53
BRCA1-227ENST00000591849 ZNF792Q3KQV3 632 aa11.74□□□□□ -0.53
BRCA1-227ENST00000591849 MB21D2Q8IYB1 491 aaPredicted RBP11.74□□□□□ -0.53
BRCA1-227ENST00000591849 ADGRF4Q8IZF3 695 aa11.74□□□□□ -0.53
BRCA1-227ENST00000591849 TMEM87BQ96K49 555 aa11.74□□□□□ -0.53
BRCA1-227ENST00000591849 NEK1Q96PY6 1258 aa11.74□□□□□ -0.53
BRCA1-227ENST00000591849 TINF2Q9BSI4 451 aa11.74□□□□□ -0.53
BRCA1-227ENST00000591849 CPVLQ9H3G5 476 aa11.74□□□□□ -0.53
BRCA1-227ENST00000591849 PAK6Q9NQU5 681 aaPredicted RBP11.74□□□□□ -0.53
BRCA1-227ENST00000591849 PTPDC1A2A3K4 754 aa11.73□□□□□ -0.53
BRCA1-227ENST00000591849 PFASO15067 1338 aa11.73□□□□□ -0.53
BRCA1-227ENST00000591849 ZNF536O15090 1300 aa11.73□□□□□ -0.53
BRCA1-227ENST00000591849 MSCO60682 206 aa11.73□□□□□ -0.53
BRCA1-227ENST00000591849 KIF5BP33176 963 aa11.73□□□□□ -0.53
BRCA1-227ENST00000591849 USH1GQ495M9 461 aa11.73□□□□□ -0.53
BRCA1-227ENST00000591849 MUM1L1Q5H9M0 696 aa11.73□□□□□ -0.53
BRCA1-227ENST00000591849 PRAMEF19Q5SWL8 479 aa11.73□□□□□ -0.53
BRCA1-227ENST00000591849 MAP3K21Q5TCX8 1036 aa11.73□□□□□ -0.53
BRCA1-227ENST00000591849 CTCFLQ8NI51 663 aaPredicted RBP11.73□□□□□ -0.53
BRCA1-227ENST00000591849 IGDCC4Q8TDY8 1250 aa11.73□□□□□ -0.53
BRCA1-227ENST00000591849 MTA3Q9BTC8 594 aa11.73□□□□□ -0.53
BRCA1-227ENST00000591849 NAP1L2Q9ULW6 460 aaPredicted RBP11.73□□□□□ -0.53
BRCA1-227ENST00000591849 MYH4Q9Y623 1939 aa11.73□□□□□ -0.53
BRCA1-227ENST00000591849 HMGB1P09429 215 aaKnown RBP11.72□□□□□ -0.53
BRCA1-227ENST00000591849 ANTXR2P58335 489 aa11.72□□□□□ -0.53
BRCA1-227ENST00000591849 TRAF1Q13077 416 aa11.72□□□□□ -0.53
BRCA1-227ENST00000591849 GRM4Q14833 912 aa11.72□□□□□ -0.53
BRCA1-227ENST00000591849 CDC37Q16543 378 aaPredicted RBP11.72□□□□□ -0.53
BRCA1-227ENST00000591849 NECAB2Q7Z6G3 386 aa11.72□□□□□ -0.53
BRCA1-227ENST00000591849 FBXO11Q86XK2 927 aa11.72□□□□□ -0.53
BRCA1-227ENST00000591849 STAG2Q8N3U4 1231 aa11.72□□□□□ -0.53
BRCA1-227ENST00000591849 MSL3Q8N5Y2 521 aaKnown RBP11.72□□□□□ -0.53
BRCA1-227ENST00000591849 DPF3Q92784 378 aa11.72□□□□□ -0.53
BRCA1-227ENST00000591849 HTATIP2Q9BUP3 242 aa11.72□□□□□ -0.53
BRCA1-227ENST00000591849 LRRC2Q9BYS8 371 aa11.72□□□□□ -0.53
BRCA1-227ENST00000591849 LY9Q9HBG7 655 aa11.72□□□□□ -0.53
BRCA1-227ENST00000591849 A1CFQ9NQ94 594 aaKnown RBP11.72□□□□□ -0.53
BRCA1-227ENST00000591849 DDX20Q9UHI6 824 aaKnown RBP11.72□□□□□ -0.53
BRCA1-227ENST00000591849 ZHX1Q9UKY1 873 aaPredicted RBP11.72□□□□□ -0.53
BRCA1-227ENST00000591849 SLC12A7Q9Y666 1083 aa11.72□□□□□ -0.53
BRCA1-227ENST00000591849 DOCK3Q8IZD9 2030 aa11.72□□□□□ -0.53
BRCA1-227ENST00000591849 WDR19Q8NEZ3 1342 aa11.71□□□□□ -0.53
BRCA1-227ENST00000591849 ASB14A6NK59 587 aa11.71□□□□□ -0.53
BRCA1-227ENST00000591849 SH2B2O14492 632 aaPredicted RBP11.71□□□□□ -0.53
BRCA1-227ENST00000591849 EIF5BO60841 1220 aaKnown RBP11.71□□□□□ -0.53
BRCA1-227ENST00000591849 DDAH1O94760 285 aa11.71□□□□□ -0.53
BRCA1-227ENST00000591849 CALM1P0DP23 149 aa11.71□□□□□ -0.53
BRCA1-227ENST00000591849 CALM2P0DP24 149 aa11.71□□□□□ -0.53
BRCA1-227ENST00000591849 CALM3P0DP25 149 aa11.71□□□□□ -0.53
BRCA1-227ENST00000591849 CYBAP13498 195 aa11.71□□□□□ -0.53
BRCA1-227ENST00000591849 CALML3P27482 149 aa11.71□□□□□ -0.53
BRCA1-227ENST00000591849 PSMA5P28066 241 aa11.71□□□□□ -0.53
BRCA1-227ENST00000591849 GNAQP50148 359 aa11.71□□□□□ -0.53
BRCA1-227ENST00000591849 CNTN2Q02246 1040 aa11.71□□□□□ -0.53
BRCA1-227ENST00000591849 BAATQ14032 418 aaPredicted RBP11.71□□□□□ -0.53
BRCA1-227ENST00000591849 HABP4Q5JVS0 413 aaKnown RBP11.71□□□□□ -0.53
BRCA1-227ENST00000591849 ANO1Q5XXA6 986 aa11.71□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms