RNA–Protein interactions for RNA: ENST00000582352.1

SHMT1-208, Transcript of serine hydroxymethyltransferase 1, humanhuman

Gene SHMT1, Length 2,756 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-208ENST00000582352 CAVIN4Q5BKX8 364 aa13.67□□□□□ -0.22
SHMT1-208ENST00000582352 FAM47AQ5JRC9 791 aa13.67□□□□□ -0.22
SHMT1-208ENST00000582352 CCDC70Q6NSX1 233 aa13.67□□□□□ -0.22
SHMT1-208ENST00000582352 FOXR1Q6PIV2 292 aa13.67□□□□□ -0.22
SHMT1-208ENST00000582352 SMARCC1Q92922 1105 aaPredicted RBP13.67□□□□□ -0.22
SHMT1-208ENST00000582352 PCMTD1Q96MG8 357 aaPredicted RBP13.67□□□□□ -0.22
SHMT1-208ENST00000582352 NUP58Q9BVL2 599 aa13.67□□□□□ -0.22
SHMT1-208ENST00000582352 DDX52Q9Y2R4 599 aaKnown RBP eCLIP13.67□□□□□ -0.22
SHMT1-208ENST00000582352 LAMB2P55268 1798 aa13.67□□□□□ -0.22
SHMT1-208ENST00000582352 CCDC194A0A1B0GVG4 234 aa13.66□□□□□ -0.22
SHMT1-208ENST00000582352 ANO9A1A5B4 782 aa13.66□□□□□ -0.22
SHMT1-208ENST00000582352 SYF2O95926 243 aaKnown RBP13.66□□□□□ -0.22
SHMT1-208ENST00000582352 IDEP14735 1019 aa13.66□□□□□ -0.22
SHMT1-208ENST00000582352 LRRC31Q6UY01 552 aa13.66□□□□□ -0.22
SHMT1-208ENST00000582352 CSGALNACT2Q8N6G5 542 aa13.66□□□□□ -0.22
SHMT1-208ENST00000582352 TUBGCP2Q9BSJ2 902 aa13.66□□□□□ -0.22
SHMT1-208ENST00000582352 JADE2Q9NQC1 790 aa13.66□□□□□ -0.22
SHMT1-208ENST00000582352 LAMB1P07942 1786 aa13.66□□□□□ -0.22
SHMT1-208ENST00000582352 ADAMTS3O15072 1205 aa13.66□□□□□ -0.22
SHMT1-208ENST00000582352 SRGNP10124 158 aa13.66□□□□□ -0.22
SHMT1-208ENST00000582352 VEGFAP15692 232 aaPredicted RBP13.66□□□□□ -0.22
SHMT1-208ENST00000582352 NAALADL2Q58DX5 795 aa13.66□□□□□ -0.22
SHMT1-208ENST00000582352 CCDC170Q8IYT3 715 aa13.66□□□□□ -0.22
SHMT1-208ENST00000582352 C4orf32Q8N8J7 132 aa13.66□□□□□ -0.22
SHMT1-208ENST00000582352 RETREG2Q8NC44 543 aa13.66□□□□□ -0.22
SHMT1-208ENST00000582352 GPKOWQ92917 476 aaPredicted RBP eCLIP13.66□□□□□ -0.22
SHMT1-208ENST00000582352 NHEJ1Q9H9Q4 299 aaPredicted RBP13.66□□□□□ -0.22
SHMT1-208ENST00000582352 FAM205AQ6ZU69 1335 aa13.66□□□□□ -0.22
SHMT1-208ENST00000582352 TSPY2A6NKD2 308 aa13.66□□□□□ -0.22
SHMT1-208ENST00000582352 PP2D1A8MPX8 630 aa13.66□□□□□ -0.22
SHMT1-208ENST00000582352 RHOBTB3O94955 611 aa13.66□□□□□ -0.22
SHMT1-208ENST00000582352 GIMAP8Q8ND71 665 aaPredicted RBP13.66□□□□□ -0.22
SHMT1-208ENST00000582352 GDAP1L1Q96MZ0 367 aa13.66□□□□□ -0.22
SHMT1-208ENST00000582352 AGPAT5Q9NUQ2 364 aa13.66□□□□□ -0.22
SHMT1-208ENST00000582352 PCDHA4Q9UN74 947 aa13.66□□□□□ -0.22
SHMT1-208ENST00000582352 NIP7Q9Y221 180 aaKnown RBP eCLIP13.66□□□□□ -0.22
SHMT1-208ENST00000582352 MACROD2A1Z1Q3 448 aa13.65□□□□□ -0.22
SHMT1-208ENST00000582352 EIF3CLB5ME19 914 aaKnown RBP13.65□□□□□ -0.22
SHMT1-208ENST00000582352 ZMYND10O75800 440 aa13.65□□□□□ -0.22
SHMT1-208ENST00000582352 PRPF6O94906 941 aaKnown RBP13.65□□□□□ -0.22
SHMT1-208ENST00000582352 NTSR2O95665 410 aa13.65□□□□□ -0.22
SHMT1-208ENST00000582352 ZBED6P86452 979 aa13.65□□□□□ -0.22
SHMT1-208ENST00000582352 SEMA3FQ13275 785 aa13.65□□□□□ -0.22
SHMT1-208ENST00000582352 TTI2Q6NXR4 508 aa13.65□□□□□ -0.22
SHMT1-208ENST00000582352 FAM114A1Q8IWE2 563 aa13.65□□□□□ -0.22
SHMT1-208ENST00000582352 RASGRP4Q8TDF6 673 aa13.65□□□□□ -0.22
SHMT1-208ENST00000582352 CCDC47Q96A33 483 aaKnown RBP13.65□□□□□ -0.22
SHMT1-208ENST00000582352 EIF3CQ99613 913 aaKnown RBP13.65□□□□□ -0.22
SHMT1-208ENST00000582352 CRNKL1Q9BZJ0 848 aaKnown RBP13.65□□□□□ -0.22
SHMT1-208ENST00000582352 TSGA10Q9BZW7 698 aa13.65□□□□□ -0.22
SHMT1-208ENST00000582352 TTYH3Q9C0H2 523 aa13.65□□□□□ -0.22
SHMT1-208ENST00000582352 LACRTQ9GZZ8 138 aa13.65□□□□□ -0.22
SHMT1-208ENST00000582352 SCN7AQ01118 1682 aa13.65□□□□□ -0.22
SHMT1-208ENST00000582352 BICDL2A1A5D9 508 aa13.65□□□□□ -0.22
SHMT1-208ENST00000582352 KLRC4O43908 158 aa13.65□□□□□ -0.22
SHMT1-208ENST00000582352 TBC1D8BQ0IIM8 1120 aa13.65□□□□□ -0.22
SHMT1-208ENST00000582352 KIF5AQ12840 1032 aa13.65□□□□□ -0.22
SHMT1-208ENST00000582352 GSPT2Q8IYD1 628 aaKnown RBP13.65□□□□□ -0.22
SHMT1-208ENST00000582352 SECISBP2LQ93073 1101 aaKnown RBP13.65□□□□□ -0.22
SHMT1-208ENST00000582352 DHTKD1Q96HY7 919 aaPredicted RBP13.65□□□□□ -0.22
SHMT1-208ENST00000582352 PLIN2Q99541 437 aa13.65□□□□□ -0.22
SHMT1-208ENST00000582352 SELENOOQ9BVL4 669 aa13.65□□□□□ -0.22
SHMT1-208ENST00000582352 KAT14Q9H8E8 782 aa13.65□□□□□ -0.22
SHMT1-208ENST00000582352 SH3GLB2Q9NR46 395 aa13.65□□□□□ -0.22
SHMT1-208ENST00000582352 CCDC87Q9NVE4 849 aa13.65□□□□□ -0.22
SHMT1-208ENST00000582352 XIRP1Q702N8 1843 aaKnown RBP13.65□□□□□ -0.23
SHMT1-208ENST00000582352 NUTM2BA6NNL0 878 aaPredicted RBP13.64□□□□□ -0.23
SHMT1-208ENST00000582352 NUTM2EB1AL46 878 aaPredicted RBP13.64□□□□□ -0.23
SHMT1-208ENST00000582352 PPFIA4O75335 1185 aa13.64□□□□□ -0.23
SHMT1-208ENST00000582352 MTIF2P46199 727 aaKnown RBP13.64□□□□□ -0.23
SHMT1-208ENST00000582352 EVX2Q03828 476 aa13.64□□□□□ -0.23
SHMT1-208ENST00000582352 UBE4AQ14139 1066 aa13.64□□□□□ -0.23
SHMT1-208ENST00000582352 ANKRD18AQ8IVF6 992 aa13.64□□□□□ -0.23
SHMT1-208ENST00000582352 FNBP4Q8N3X1 1017 aaPredicted RBP13.64□□□□□ -0.23
SHMT1-208ENST00000582352 CNOT6LQ96LI5 555 aaKnown RBP13.64□□□□□ -0.23
SHMT1-208ENST00000582352 BTG4Q9NY30 223 aa13.64□□□□□ -0.23
SHMT1-208ENST00000582352 RCCD1A6NED2 376 aa13.64□□□□□ -0.23
SHMT1-208ENST00000582352 ZNF185O15231 689 aa13.64□□□□□ -0.23
SHMT1-208ENST00000582352 GGCXP38435 758 aa13.64□□□□□ -0.23
SHMT1-208ENST00000582352 C2orf54Q08AI8 447 aa13.64□□□□□ -0.23
SHMT1-208ENST00000582352 SPA17Q15506 151 aa13.64□□□□□ -0.23
SHMT1-208ENST00000582352 EEF2KMTQ96G04 330 aa13.64□□□□□ -0.23
SHMT1-208ENST00000582352 DCP1AQ9NPI6 582 aaPredicted RBP13.64□□□□□ -0.23
SHMT1-208ENST00000582352 KBTBD4Q9NVX7 518 aa13.64□□□□□ -0.23
SHMT1-208ENST00000582352 ARPP21Q9UBL0 812 aaPredicted RBP13.64□□□□□ -0.23
SHMT1-208ENST00000582352 A0A0G2JS52 829 aa13.63□□□□□ -0.23
SHMT1-208ENST00000582352 GOLGA6BA6NDN3 693 aa13.63□□□□□ -0.23
SHMT1-208ENST00000582352 CAMTA2O94983 1202 aa13.63□□□□□ -0.23
SHMT1-208ENST00000582352 MAGEA9P43362 315 aa13.63□□□□□ -0.23
SHMT1-208ENST00000582352 KLK7P49862 253 aa13.63□□□□□ -0.23
SHMT1-208ENST00000582352 VAV2P52735 878 aa13.63□□□□□ -0.23
SHMT1-208ENST00000582352 CCDC96Q2M329 555 aa13.63□□□□□ -0.23
SHMT1-208ENST00000582352 ZNF384Q8TF68 577 aa13.63□□□□□ -0.23
SHMT1-208ENST00000582352 RIN2Q8WYP3 895 aaPredicted RBP13.63□□□□□ -0.23
SHMT1-208ENST00000582352 ZC3H4Q9UPT8 1303 aaKnown RBP13.63□□□□□ -0.23
SHMT1-208ENST00000582352 CYP27A1Q02318 531 aa13.63□□□□□ -0.23
SHMT1-208ENST00000582352 INF2Q27J81 1249 aa13.63□□□□□ -0.23
SHMT1-208ENST00000582352 CCDC178Q5BJE1 867 aa13.63□□□□□ -0.23
SHMT1-208ENST00000582352 FKBP15Q5T1M5 1219 aa13.63□□□□□ -0.23
SHMT1-208ENST00000582352 FAM76AQ8TAV0 307 aa13.63□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms