RNA–Protein interactions for RNA: ENST00000580419.5

SMARCE1-216, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1, humanhuman

TSL 1 (best) BASIC

Gene SMARCE1, Length 1,228 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCE1-216ENST00000580419 TOP1P11387 765 aaKnown RBP17.13■□□□□ 0.33
SMARCE1-216ENST00000580419 SAMD1Q6SPF0 538 aaPredicted RBP17.13■□□□□ 0.33
SMARCE1-216ENST00000580419 CCDC129Q6ZRS4 1044 aa17.13■□□□□ 0.33
SMARCE1-216ENST00000580419 PLEKHM2Q8IWE5 1019 aa17.13■□□□□ 0.33
SMARCE1-216ENST00000580419 CPXCR1Q8N123 301 aa17.13■□□□□ 0.33
SMARCE1-216ENST00000580419 ANKRD35Q8N283 1001 aa17.13■□□□□ 0.33
SMARCE1-216ENST00000580419 KLHDC9Q8NEP7 349 aa17.13■□□□□ 0.33
SMARCE1-216ENST00000580419 FAM227BQ96M60 508 aa17.13■□□□□ 0.33
SMARCE1-216ENST00000580419 LBHD1Q9BQE6 289 aaPredicted RBP17.13■□□□□ 0.33
SMARCE1-216ENST00000580419 LNPKQ9C0E8 428 aa17.13■□□□□ 0.33
SMARCE1-216ENST00000580419 RNF41Q9H4P4 317 aaPredicted RBP17.13■□□□□ 0.33
SMARCE1-216ENST00000580419 RAVER2Q9HCJ3 691 aaKnown RBP17.13■□□□□ 0.33
SMARCE1-216ENST00000580419 PRKAG2Q9UGJ0 569 aa17.13■□□□□ 0.33
SMARCE1-216ENST00000580419 LAMA4Q16363 1823 aa17.12■□□□□ 0.33
SMARCE1-216ENST00000580419 RANBP6O60518 1105 aaKnown RBP17.12■□□□□ 0.33
SMARCE1-216ENST00000580419 SYN1P17600 705 aa17.12■□□□□ 0.33
SMARCE1-216ENST00000580419 MCCP23508 829 aa17.12■□□□□ 0.33
SMARCE1-216ENST00000580419 CTDSPL2Q05D32 466 aa17.12■□□□□ 0.33
SMARCE1-216ENST00000580419 CCDC178Q5BJE1 867 aa17.12■□□□□ 0.33
SMARCE1-216ENST00000580419 CCSAPQ6IQ19 270 aaPredicted RBP17.12■□□□□ 0.33
SMARCE1-216ENST00000580419 FGD4Q96M96 766 aa17.12■□□□□ 0.33
SMARCE1-216ENST00000580419 UPF3AQ9H1J1 476 aaKnown RBP17.12■□□□□ 0.33
SMARCE1-216ENST00000580419 ASB14A6NK59 587 aa17.11■□□□□ 0.33
SMARCE1-216ENST00000580419 SDSP20132 328 aa17.11■□□□□ 0.33
SMARCE1-216ENST00000580419 ADCYAP1R1P41586 468 aa17.11■□□□□ 0.33
SMARCE1-216ENST00000580419 ACVR2BQ13705 512 aa17.11■□□□□ 0.33
SMARCE1-216ENST00000580419 AKNAD1Q5T1N1 836 aa17.11■□□□□ 0.33
SMARCE1-216ENST00000580419 FAM109BQ6ICB4 259 aaPredicted RBP17.11■□□□□ 0.33
SMARCE1-216ENST00000580419 ANKRD33Q7Z3H0 272 aa17.11■□□□□ 0.33
SMARCE1-216ENST00000580419 NUP133Q8WUM0 1156 aa17.11■□□□□ 0.33
SMARCE1-216ENST00000580419 SEZ6LQ9BYH1 1024 aa17.11■□□□□ 0.33
SMARCE1-216ENST00000580419 CDKN2AIPQ9NXV6 580 aaPredicted RBP17.11■□□□□ 0.33
SMARCE1-216ENST00000580419 PRR12Q9ULL5 1215 aa17.11■□□□□ 0.33
SMARCE1-216ENST00000580419 TACC3Q9Y6A5 838 aa17.11■□□□□ 0.33
SMARCE1-216ENST00000580419 ELP1O95163 1332 aa17.11■□□□□ 0.33
SMARCE1-216ENST00000580419 A0A0C4DFX4 3053 aa17.11■□□□□ 0.33
SMARCE1-216ENST00000580419 SOX1O00570 391 aaPredicted RBP17.1■□□□□ 0.33
SMARCE1-216ENST00000580419 ICAM1P05362 532 aa17.1■□□□□ 0.33
SMARCE1-216ENST00000580419 SNHG28P0DPA3 235 aa17.1■□□□□ 0.33
SMARCE1-216ENST00000580419 TAL1P17542 331 aaPredicted RBP17.1■□□□□ 0.33
SMARCE1-216ENST00000580419 GJA9P57773 515 aa17.1■□□□□ 0.33
SMARCE1-216ENST00000580419 NMIQ13287 307 aaPredicted RBP17.1■□□□□ 0.33
SMARCE1-216ENST00000580419 ZNF589Q86UQ0 364 aaPredicted RBP17.1■□□□□ 0.33
SMARCE1-216ENST00000580419 PCSK9Q8NBP7 692 aaKnown RBP17.1■□□□□ 0.33
SMARCE1-216ENST00000580419 MORC4Q8TE76 937 aa17.1■□□□□ 0.33
SMARCE1-216ENST00000580419 KATNBL1Q9H079 304 aa17.1■□□□□ 0.33
SMARCE1-216ENST00000580419 RANBP17Q9H2T7 1088 aaKnown RBP17.1■□□□□ 0.33
SMARCE1-216ENST00000580419 A1CFQ9NQ94 594 aaKnown RBP17.1■□□□□ 0.33
SMARCE1-216ENST00000580419 TRIM6-TRIM34B2RNG4 842 aa17.09■□□□□ 0.33
SMARCE1-216ENST00000580419 POTEB2H3BUK9 544 aa17.09■□□□□ 0.33
SMARCE1-216ENST00000580419 ATN1P54259 1190 aaPredicted RBP17.09■□□□□ 0.33
SMARCE1-216ENST00000580419 MFSD6Q6ZSS7 791 aa17.09■□□□□ 0.33
SMARCE1-216ENST00000580419 ARMCX2Q7L311 632 aa17.09■□□□□ 0.33
SMARCE1-216ENST00000580419 DGKHQ86XP1 1220 aa17.09■□□□□ 0.33
SMARCE1-216ENST00000580419 ANKS1AQ92625 1134 aa17.09■□□□□ 0.33
SMARCE1-216ENST00000580419 DSCC1Q9BVC3 393 aa17.09■□□□□ 0.33
SMARCE1-216ENST00000580419 SPC25Q9HBM1 224 aa17.09■□□□□ 0.33
SMARCE1-216ENST00000580419 RNF146Q9NTX7 359 aa17.09■□□□□ 0.33
SMARCE1-216ENST00000580419 Q9Y3F1 56 aa17.09■□□□□ 0.33
SMARCE1-216ENST00000580419 MROH7Q68CQ1 1323 aa17.09■□□□□ 0.33
SMARCE1-216ENST00000580419 SYNRGQ9UMZ2 1314 aa17.09■□□□□ 0.33
SMARCE1-216ENST00000580419 WDR19Q8NEZ3 1342 aa17.08■□□□□ 0.32
SMARCE1-216ENST00000580419 A0A1W2PQ45 241 aaPredicted RBP17.08■□□□□ 0.32
SMARCE1-216ENST00000580419 A0A1W2PQY0 241 aa17.08■□□□□ 0.32
SMARCE1-216ENST00000580419 KIAA0355O15063 1070 aa17.08■□□□□ 0.32
SMARCE1-216ENST00000580419 NMT2O60551 498 aa17.08■□□□□ 0.32
SMARCE1-216ENST00000580419 PGK1P00558 417 aa17.08■□□□□ 0.32
SMARCE1-216ENST00000580419 IGHDP01880 384 aa17.08■□□□□ 0.32
SMARCE1-216ENST00000580419 ACLYP53396 1101 aa17.08■□□□□ 0.32
SMARCE1-216ENST00000580419 IKQ13123 557 aaPredicted RBP17.08■□□□□ 0.32
SMARCE1-216ENST00000580419 GPATCH4Q5T3I0 446 aaKnown RBP17.08■□□□□ 0.32
SMARCE1-216ENST00000580419 ANO1Q5XXA6 986 aa17.08■□□□□ 0.32
SMARCE1-216ENST00000580419 CCDC144CPQ8IYA2 1237 aa17.08■□□□□ 0.32
SMARCE1-216ENST00000580419 ESR2Q92731 530 aa17.08■□□□□ 0.32
SMARCE1-216ENST00000580419 TRERF1Q96PN7 1200 aa17.08■□□□□ 0.32
SMARCE1-216ENST00000580419 TMEM47Q9BQJ4 181 aa17.08■□□□□ 0.32
SMARCE1-216ENST00000580419 PDLIM7Q9NR12 457 aa17.08■□□□□ 0.32
SMARCE1-216ENST00000580419 ATP11BQ9Y2G3 1177 aa17.08■□□□□ 0.32
SMARCE1-216ENST00000580419 PDHBP11177 359 aa17.07■□□□□ 0.32
SMARCE1-216ENST00000580419 CCDC144BQ3MJ40 725 aa17.07■□□□□ 0.32
SMARCE1-216ENST00000580419 TRIM60Q495X7 471 aa17.07■□□□□ 0.32
SMARCE1-216ENST00000580419 KCTD1Q719H9 257 aa17.07■□□□□ 0.32
SMARCE1-216ENST00000580419 RILPL2Q969X0 211 aa17.07■□□□□ 0.32
SMARCE1-216ENST00000580419 LRCH3Q96II8 777 aa17.07■□□□□ 0.32
SMARCE1-216ENST00000580419 AGBL1Q96MI9 1066 aa17.07■□□□□ 0.32
SMARCE1-216ENST00000580419 INCENPQ9NQS7 918 aa17.07■□□□□ 0.32
SMARCE1-216ENST00000580419 CYP39A1Q9NYL5 469 aa17.07■□□□□ 0.32
SMARCE1-216ENST00000580419 CTNNA3Q9UI47 895 aa17.07■□□□□ 0.32
SMARCE1-216ENST00000580419 LCTP09848 1927 aa17.06■□□□□ 0.32
SMARCE1-216ENST00000580419 ZNF213O14771 459 aa17.06■□□□□ 0.32
SMARCE1-216ENST00000580419 MDM2Q00987 491 aaPredicted RBP17.06■□□□□ 0.32
SMARCE1-216ENST00000580419 TLE2Q04725 743 aa17.06■□□□□ 0.32
SMARCE1-216ENST00000580419 ZNF543Q08ER8 600 aa17.06■□□□□ 0.32
SMARCE1-216ENST00000580419 SYDE2Q5VT97 1194 aa17.06■□□□□ 0.32
SMARCE1-216ENST00000580419 IQSEC1Q6DN90 963 aa17.06■□□□□ 0.32
SMARCE1-216ENST00000580419 RGS22Q8NE09 1264 aa17.06■□□□□ 0.32
SMARCE1-216ENST00000580419 DIAPH3Q9NSV4 1193 aa17.06■□□□□ 0.32
SMARCE1-216ENST00000580419 ADD3Q9UEY8 706 aaKnown RBP17.06■□□□□ 0.32
SMARCE1-216ENST00000580419 LRRC37A2A6NM11 1700 aa17.05■□□□□ 0.32
SMARCE1-216ENST00000580419 CABYRO75952 493 aa17.05■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms