RNA–Protein interactions for RNA: ENST00000578595.1

SS18-209, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 406 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-209ENST00000578595 FBXO40Q9UH90 709 aa22.81■■□□□ 1.24
SS18-209ENST00000578595 CCPG1Q9ULG6 757 aa22.81■■□□□ 1.24
SS18-209ENST00000578595 ATP2A1O14983 1001 aa22.8■■□□□ 1.24
SS18-209ENST00000578595 COBLO75128 1261 aa22.8■■□□□ 1.24
SS18-209ENST00000578595 TFRCP02786 760 aaKnown RBP22.8■■□□□ 1.24
SS18-209ENST00000578595 HOXC6P09630 235 aa22.8■■□□□ 1.24
SS18-209ENST00000578595 CNGA1P29973 690 aa22.8■■□□□ 1.24
SS18-209ENST00000578595 CYP2C19P33261 490 aa22.8■■□□□ 1.24
SS18-209ENST00000578595 CACNB2Q08289 660 aaPredicted RBP22.8■■□□□ 1.24
SS18-209ENST00000578595 WTAPQ15007 396 aa22.8■■□□□ 1.24
SS18-209ENST00000578595 TMEM67Q5HYA8 995 aa22.8■■□□□ 1.24
SS18-209ENST00000578595 RNF146Q9NTX7 359 aa22.8■■□□□ 1.24
SS18-209ENST00000578595 PARP1P09874 1014 aaKnown RBP22.79■■□□□ 1.24
SS18-209ENST00000578595 CHST13Q8NET6 341 aa22.79■■□□□ 1.24
SS18-209ENST00000578595 ANKS1AQ92625 1134 aa22.79■■□□□ 1.24
SS18-209ENST00000578595 ACAD9Q9H845 621 aa22.79■■□□□ 1.24
SS18-209ENST00000578595 SNHG28P0DPA3 235 aa22.78■■□□□ 1.24
SS18-209ENST00000578595 TAL1P17542 331 aaPredicted RBP22.78■■□□□ 1.24
SS18-209ENST00000578595 GJA8P48165 433 aa22.78■■□□□ 1.24
SS18-209ENST00000578595 ASPRV1Q53RT3 343 aa22.78■■□□□ 1.24
SS18-209ENST00000578595 TRERF1Q96PN7 1200 aa22.78■■□□□ 1.24
SS18-209ENST00000578595 UBA5Q9GZZ9 404 aa22.78■■□□□ 1.24
SS18-209ENST00000578595 CPVLQ9H3G5 476 aa22.78■■□□□ 1.24
SS18-209ENST00000578595 PRC1O43663 620 aa22.77■■□□□ 1.24
SS18-209ENST00000578595 SGPL1O95470 568 aa22.77■■□□□ 1.24
SS18-209ENST00000578595 CCND3P30281 292 aaPredicted RBP22.77■■□□□ 1.24
SS18-209ENST00000578595 SEC23AQ15436 765 aa22.77■■□□□ 1.24
SS18-209ENST00000578595 BTNL9Q6UXG8 535 aa22.77■■□□□ 1.24
SS18-209ENST00000578595 MB21D2Q8IYB1 491 aaPredicted RBP22.77■■□□□ 1.24
SS18-209ENST00000578595 SHISA4Q96DD7 197 aa22.77■■□□□ 1.24
SS18-209ENST00000578595 MAML3Q96JK9 1138 aa22.77■■□□□ 1.24
SS18-209ENST00000578595 RANBP17Q9H2T7 1088 aaKnown RBP22.77■■□□□ 1.24
SS18-209ENST00000578595 PAK6Q9NQU5 681 aaPredicted RBP22.77■■□□□ 1.24
SS18-209ENST00000578595 ZNF536O15090 1300 aa22.77■■□□□ 1.24
SS18-209ENST00000578595 ICAM1P05362 532 aa22.76■■□□□ 1.23
SS18-209ENST00000578595 MCM5P33992 734 aa22.76■■□□□ 1.23
SS18-209ENST00000578595 NECTIN1Q15223 517 aa22.76■■□□□ 1.23
SS18-209ENST00000578595 TKFCQ3LXA3 575 aa22.76■■□□□ 1.23
SS18-209ENST00000578595 MAP3K21Q5TCX8 1036 aa22.76■■□□□ 1.23
SS18-209ENST00000578595 OLFML2BQ68BL8 750 aa22.76■■□□□ 1.23
SS18-209ENST00000578595 NFXL1Q6ZNB6 911 aa22.76■■□□□ 1.23
SS18-209ENST00000578595 LCTP09848 1927 aa22.75■■□□□ 1.23
SS18-209ENST00000578595 ANTXR2P58335 489 aa22.75■■□□□ 1.23
SS18-209ENST00000578595 NSMFQ6X4W1 530 aa22.75■■□□□ 1.23
SS18-209ENST00000578595 CATIPQ7Z7H3 387 aa22.75■■□□□ 1.23
SS18-209ENST00000578595 NUP133Q8WUM0 1156 aa22.75■■□□□ 1.23
SS18-209ENST00000578595 VAT1LQ9HCJ6 419 aa22.75■■□□□ 1.23
SS18-209ENST00000578595 FARP2O94887 1054 aaPredicted RBP22.74■■□□□ 1.23
SS18-209ENST00000578595 REC8O95072 547 aa22.74■■□□□ 1.23
SS18-209ENST00000578595 USH1GQ495M9 461 aa22.74■■□□□ 1.23
SS18-209ENST00000578595 SENP2Q9HC62 589 aa22.74■■□□□ 1.23
SS18-209ENST00000578595 POTEB2H3BUK9 544 aa22.73■■□□□ 1.23
SS18-209ENST00000578595 CDC37Q16543 378 aaPredicted RBP22.73■■□□□ 1.23
SS18-209ENST00000578595 ZNF792Q3KQV3 632 aa22.73■■□□□ 1.23
SS18-209ENST00000578595 MUM1L1Q5H9M0 696 aa22.73■■□□□ 1.23
SS18-209ENST00000578595 CCDC69A6NI79 296 aa22.72■■□□□ 1.23
SS18-209ENST00000578595 ADGRF4Q8IZF3 695 aa22.72■■□□□ 1.23
SS18-209ENST00000578595 STAG2Q8N3U4 1231 aa22.72■■□□□ 1.23
SS18-209ENST00000578595 TINF2Q9BSI4 451 aa22.72■■□□□ 1.23
SS18-209ENST00000578595 LRRC2Q9BYS8 371 aa22.72■■□□□ 1.23
SS18-209ENST00000578595 A1CFQ9NQ94 594 aaKnown RBP22.72■■□□□ 1.23
SS18-209ENST00000578595 PNMA2Q9UL42 364 aa22.72■■□□□ 1.23
SS18-209ENST00000578595 DIS3Q9Y2L1 958 aaKnown RBP22.72■■□□□ 1.23
SS18-209ENST00000578595 PFASO15067 1338 aa22.72■■□□□ 1.23
SS18-209ENST00000578595 PTPDC1A2A3K4 754 aa22.71■■□□□ 1.23
SS18-209ENST00000578595 KLRF2D3W0D1 207 aa22.71■■□□□ 1.23
SS18-209ENST00000578595 MYCNP04198 464 aaPredicted RBP22.71■■□□□ 1.23
SS18-209ENST00000578595 CYBAP13498 195 aa22.71■■□□□ 1.23
SS18-209ENST00000578595 KRT32Q14532 448 aa22.71■■□□□ 1.23
SS18-209ENST00000578595 PRAMEF19Q5SWL8 479 aa22.71■■□□□ 1.23
SS18-209ENST00000578595 TMEM87BQ96K49 555 aa22.71■■□□□ 1.23
SS18-209ENST00000578595 NEK1Q96PY6 1258 aa22.71■■□□□ 1.23
SS18-209ENST00000578595 MYL10Q9BUA6 226 aa22.71■■□□□ 1.23
SS18-209ENST00000578595 GPHNQ9NQX3 736 aaPredicted RBP22.71■■□□□ 1.23
SS18-209ENST00000578595 CNPY2Q9Y2B0 182 aa22.71■■□□□ 1.23
SS18-209ENST00000578595 BRCA2P51587 3418 aa22.71■■□□□ 1.23
SS18-209ENST00000578595 GRM4Q14833 912 aa22.7■■□□□ 1.22
SS18-209ENST00000578595 ANO1Q5XXA6 986 aa22.7■■□□□ 1.22
SS18-209ENST00000578595 HOMER1Q86YM7 354 aa22.7■■□□□ 1.22
SS18-209ENST00000578595 CTCFLQ8NI51 663 aaPredicted RBP22.7■■□□□ 1.22
SS18-209ENST00000578595 IGDCC4Q8TDY8 1250 aa22.7■■□□□ 1.22
SS18-209ENST00000578595 LY9Q9HBG7 655 aa22.7■■□□□ 1.22
SS18-209ENST00000578595 DDX20Q9UHI6 824 aaKnown RBP22.7■■□□□ 1.22
SS18-209ENST00000578595 TNRC18O15417 2968 aaPredicted RBP22.7■■□□□ 1.22
SS18-209ENST00000578595 WDR19Q8NEZ3 1342 aa22.69■■□□□ 1.22
SS18-209ENST00000578595 SH2B2O14492 632 aaPredicted RBP22.69■■□□□ 1.22
SS18-209ENST00000578595 FGD1P98174 961 aa22.69■■□□□ 1.22
SS18-209ENST00000578595 CNTN2Q02246 1040 aa22.69■■□□□ 1.22
SS18-209ENST00000578595 RASEFQ8IZ41 740 aa22.69■■□□□ 1.22
SS18-209ENST00000578595 ZNF654Q8IZM8 581 aa22.69■■□□□ 1.22
SS18-209ENST00000578595 TRPV1Q8NER1 839 aa22.69■■□□□ 1.22
SS18-209ENST00000578595 TCEANC2Q96MN5 208 aa22.69■■□□□ 1.22
SS18-209ENST00000578595 MAD2L2Q9UI95 211 aa22.69■■□□□ 1.22
SS18-209ENST00000578595 ZHX1Q9UKY1 873 aaPredicted RBP22.69■■□□□ 1.22
SS18-209ENST00000578595 LRRC37A2A6NM11 1700 aa22.68■■□□□ 1.22
SS18-209ENST00000578595 CEP290O15078 2479 aa22.68■■□□□ 1.22
SS18-209ENST00000578595 DNAJC25-GNG10A0A024R161 153 aa22.68■■□□□ 1.22
SS18-209ENST00000578595 NFIBO00712 420 aa22.68■■□□□ 1.22
SS18-209ENST00000578595 MSCO60682 206 aa22.68■■□□□ 1.22
SS18-209ENST00000578595 COL9A3Q14050 684 aaPredicted RBP22.68■■□□□ 1.22
Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms