RNA–Protein interactions for RNA: ENST00000569080.1

CDH3-209, Transcript of cadherin 3, humanhuman

TSL 5

Gene CDH3, Length 291 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-209ENST00000569080 MFSD6Q6ZSS7 791 aa9.23□□□□□ -0.93
CDH3-209ENST00000569080 MSL3Q8N5Y2 521 aaKnown RBP9.23□□□□□ -0.93
CDH3-209ENST00000569080 FAM133AQ8N9E0 248 aa9.23□□□□□ -0.93
CDH3-209ENST00000569080 CHST13Q8NET6 341 aa9.23□□□□□ -0.93
CDH3-209ENST00000569080 CHURC1Q8WUH1 139 aa9.23□□□□□ -0.93
CDH3-209ENST00000569080 LENG1Q96BZ8 264 aaPredicted RBP9.23□□□□□ -0.93
CDH3-209ENST00000569080 CHMP4CQ96CF2 233 aa9.23□□□□□ -0.93
CDH3-209ENST00000569080 AGBL1Q96MI9 1066 aa9.23□□□□□ -0.93
CDH3-209ENST00000569080 GDF15Q99988 308 aa9.23□□□□□ -0.93
CDH3-209ENST00000569080 KATNBL1Q9H079 304 aa9.23□□□□□ -0.93
CDH3-209ENST00000569080 RANBP17Q9H2T7 1088 aaKnown RBP9.23□□□□□ -0.93
CDH3-209ENST00000569080 RNF41Q9H4P4 317 aaPredicted RBP9.23□□□□□ -0.93
CDH3-209ENST00000569080 A1CFQ9NQ94 594 aaKnown RBP9.23□□□□□ -0.93
CDH3-209ENST00000569080 TOMM22Q9NS69 142 aa9.23□□□□□ -0.93
CDH3-209ENST00000569080 RNF146Q9NTX7 359 aa9.23□□□□□ -0.93
CDH3-209ENST00000569080 FBXO40Q9UH90 709 aa9.23□□□□□ -0.93
CDH3-209ENST00000569080 ZNF213O14771 459 aa9.22□□□□□ -0.93
CDH3-209ENST00000569080 ADAMTS4O75173 837 aa9.22□□□□□ -0.93
CDH3-209ENST00000569080 CHMLP26374 656 aa9.22□□□□□ -0.93
CDH3-209ENST00000569080 SLC16A2P36021 539 aa9.22□□□□□ -0.93
CDH3-209ENST00000569080 NT5C2P49902 561 aa9.22□□□□□ -0.93
CDH3-209ENST00000569080 SNAP25P60880 206 aa9.22□□□□□ -0.93
CDH3-209ENST00000569080 ZNF543Q08ER8 600 aa9.22□□□□□ -0.93
CDH3-209ENST00000569080 SNX17Q15036 470 aa9.22□□□□□ -0.93
CDH3-209ENST00000569080 LRRC41Q15345 812 aa9.22□□□□□ -0.93
CDH3-209ENST00000569080 CCDC96Q2M329 555 aa9.22□□□□□ -0.93
CDH3-209ENST00000569080 MUM1L1Q5H9M0 696 aa9.22□□□□□ -0.93
CDH3-209ENST00000569080 GJC2Q5T442 439 aaPredicted RBP9.22□□□□□ -0.93
CDH3-209ENST00000569080 ANKS1AQ92625 1134 aa9.22□□□□□ -0.93
CDH3-209ENST00000569080 ESR2Q92731 530 aa9.22□□□□□ -0.93
CDH3-209ENST00000569080 TTC14Q96N46 770 aa9.22□□□□□ -0.93
CDH3-209ENST00000569080 ACAD9Q9H845 621 aa9.22□□□□□ -0.93
CDH3-209ENST00000569080 HOMER2Q9NSB8 354 aa9.22□□□□□ -0.93
CDH3-209ENST00000569080 ZMYND8Q9ULU4 1186 aaPredicted RBP9.22□□□□□ -0.93
CDH3-209ENST00000569080 FRMPD2Q68DX3 1309 aaPredicted RBP9.22□□□□□ -0.93
CDH3-209ENST00000569080 COL6A3P12111 3177 aa9.22□□□□□ -0.93
CDH3-209ENST00000569080 SOWAHBA6NEL2 793 aa9.21□□□□□ -0.94
CDH3-209ENST00000569080 B4E1Z4 1266 aa9.21□□□□□ -0.94
CDH3-209ENST00000569080 KDM4AO75164 1064 aa9.21□□□□□ -0.94
CDH3-209ENST00000569080 ICAM1P05362 532 aa9.21□□□□□ -0.94
CDH3-209ENST00000569080 AKR1A1P14550 325 aa9.21□□□□□ -0.94
CDH3-209ENST00000569080 SYN1P17600 705 aa9.21□□□□□ -0.94
CDH3-209ENST00000569080 CNTN2Q02246 1040 aa9.21□□□□□ -0.94
CDH3-209ENST00000569080 IKQ13123 557 aaPredicted RBP9.21□□□□□ -0.94
CDH3-209ENST00000569080 TKFCQ3LXA3 575 aa9.21□□□□□ -0.94
CDH3-209ENST00000569080 SYDE2Q5VT97 1194 aa9.21□□□□□ -0.94
CDH3-209ENST00000569080 CCDC174Q6PII3 467 aa9.21□□□□□ -0.94
CDH3-209ENST00000569080 ARMCX2Q7L311 632 aa9.21□□□□□ -0.94
CDH3-209ENST00000569080 DGKHQ86XP1 1220 aa9.21□□□□□ -0.94
CDH3-209ENST00000569080 ENAHQ8N8S7 591 aaPredicted RBP9.21□□□□□ -0.94
CDH3-209ENST00000569080 ZKSCAN3Q9BRR0 538 aa9.21□□□□□ -0.94
CDH3-209ENST00000569080 SENP6Q9GZR1 1112 aaPredicted RBP9.21□□□□□ -0.94
CDH3-209ENST00000569080 CDKN2AIPQ9NXV6 580 aaPredicted RBP9.21□□□□□ -0.94
CDH3-209ENST00000569080 ISY1Q9ULR0 285 aaKnown RBP9.21□□□□□ -0.94
CDH3-209ENST00000569080 MTMR7Q9Y216 660 aa9.21□□□□□ -0.94
CDH3-209ENST00000569080 TAF6LQ9Y6J9 622 aa9.21□□□□□ -0.94
CDH3-209ENST00000569080 SYNRGQ9UMZ2 1314 aa9.21□□□□□ -0.94
CDH3-209ENST00000569080 A0A1W2PPC1 479 aa9.2□□□□□ -0.94
CDH3-209ENST00000569080 NFIBO00712 420 aa9.2□□□□□ -0.94
CDH3-209ENST00000569080 SGSM2O43147 1006 aa9.2□□□□□ -0.94
CDH3-209ENST00000569080 PGK1P00558 417 aa9.2□□□□□ -0.94
CDH3-209ENST00000569080 RARBP10826 455 aa9.2□□□□□ -0.94
CDH3-209ENST00000569080 ALAS1P13196 640 aa9.2□□□□□ -0.94
CDH3-209ENST00000569080 BMP8BP34820 402 aa9.2□□□□□ -0.94
CDH3-209ENST00000569080 MAGEA10P43363 369 aaPredicted RBP9.2□□□□□ -0.94
CDH3-209ENST00000569080 SLC4A3P48751 1232 aa9.2□□□□□ -0.94
CDH3-209ENST00000569080 ATN1P54259 1190 aaPredicted RBP9.2□□□□□ -0.94
CDH3-209ENST00000569080 PTH1RQ03431 593 aa9.2□□□□□ -0.94
CDH3-209ENST00000569080 IMMTQ16891 758 aaKnown RBP9.2□□□□□ -0.94
CDH3-209ENST00000569080 CCSAPQ6IQ19 270 aaPredicted RBP9.2□□□□□ -0.94
CDH3-209ENST00000569080 CCDC144CPQ8IYA2 1237 aa9.2□□□□□ -0.94
CDH3-209ENST00000569080 ANKRD35Q8N283 1001 aa9.2□□□□□ -0.94
CDH3-209ENST00000569080 ARRDC4Q8NCT1 418 aa9.2□□□□□ -0.94
CDH3-209ENST00000569080 CLEC4DQ8WXI8 215 aa9.2□□□□□ -0.94
CDH3-209ENST00000569080 DDX11Q96FC9 970 aa9.2□□□□□ -0.94
CDH3-209ENST00000569080 TRERF1Q96PN7 1200 aa9.2□□□□□ -0.94
CDH3-209ENST00000569080 XPNPEP3Q9NQH7 507 aa9.2□□□□□ -0.94
CDH3-209ENST00000569080 CYP39A1Q9NYL5 469 aa9.2□□□□□ -0.94
CDH3-209ENST00000569080 CCPG1Q9ULG6 757 aa9.2□□□□□ -0.94
CDH3-209ENST00000569080 PHF24Q9UPV7 400 aa9.2□□□□□ -0.94
CDH3-209ENST00000569080 CNPY2Q9Y2B0 182 aa9.2□□□□□ -0.94
CDH3-209ENST00000569080 CTDP1Q9Y5B0 961 aaPredicted RBP9.2□□□□□ -0.94
CDH3-209ENST00000569080 DDX49Q9Y6V7 483 aaKnown RBP9.2□□□□□ -0.94
CDH3-209ENST00000569080 TNKSO95271 1327 aa9.2□□□□□ -0.94
CDH3-209ENST00000569080 WDR19Q8NEZ3 1342 aa9.2□□□□□ -0.94
CDH3-209ENST00000569080 MYADML2A6NDP7 307 aa9.19□□□□□ -0.94
CDH3-209ENST00000569080 KBTBD13C9JR72 458 aa9.19□□□□□ -0.94
CDH3-209ENST00000569080 POTEB2H3BUK9 544 aa9.19□□□□□ -0.94
CDH3-209ENST00000569080 CTAGE5O15320 804 aa9.19□□□□□ -0.94
CDH3-209ENST00000569080 CYP21A2P08686 494 aa9.19□□□□□ -0.94
CDH3-209ENST00000569080 CST5P28325 142 aaPredicted RBP9.19□□□□□ -0.94
CDH3-209ENST00000569080 RTP1P59025 263 aa9.19□□□□□ -0.94
CDH3-209ENST00000569080 NKX3-2P78367 333 aa9.19□□□□□ -0.94
CDH3-209ENST00000569080 IRX5P78411 483 aaPredicted RBP9.19□□□□□ -0.94
CDH3-209ENST00000569080 ACVR2BQ13705 512 aa9.19□□□□□ -0.94
CDH3-209ENST00000569080 SEC23AQ15436 765 aa9.19□□□□□ -0.94
CDH3-209ENST00000569080 C1orf53Q5VUE5 145 aa9.19□□□□□ -0.94
CDH3-209ENST00000569080 SLC30A10Q6XR72 485 aa9.19□□□□□ -0.94
CDH3-209ENST00000569080 STOX1Q6ZVD7 989 aa9.19□□□□□ -0.94
CDH3-209ENST00000569080 CYB5R4Q7L1T6 521 aa9.19□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms