RNA–Protein interactions for RNA: ENST00000566057.5

CLN3-221, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 931 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-221ENST00000566057 MSCO60682 206 aa21.63■■□□□ 1.05
CLN3-221ENST00000566057 PDHBP11177 359 aa21.63■■□□□ 1.05
CLN3-221ENST00000566057 TAL1P17542 331 aaPredicted RBP21.63■■□□□ 1.05
CLN3-221ENST00000566057 BTNL9Q6UXG8 535 aa21.63■■□□□ 1.05
CLN3-221ENST00000566057 RUFY2Q8WXA3 655 aa21.63■■□□□ 1.05
CLN3-221ENST00000566057 ANKRD35Q8N283 1001 aa21.62■■□□□ 1.05
CLN3-221ENST00000566057 FBXO40Q9UH90 709 aa21.62■■□□□ 1.05
CLN3-221ENST00000566057 NR2E3Q9Y5X4 410 aa21.62■■□□□ 1.05
CLN3-221ENST00000566057 LCTP09848 1927 aa21.61■■□□□ 1.05
CLN3-221ENST00000566057 SGSM2O43147 1006 aa21.61■■□□□ 1.05
CLN3-221ENST00000566057 SNHG28P0DPA3 235 aa21.61■■□□□ 1.05
CLN3-221ENST00000566057 SYDE2Q5VT97 1194 aa21.61■■□□□ 1.05
CLN3-221ENST00000566057 DGKHQ86XP1 1220 aa21.61■■□□□ 1.05
CLN3-221ENST00000566057 FGD4Q96M96 766 aa21.61■■□□□ 1.05
CLN3-221ENST00000566057 TRERF1Q96PN7 1200 aa21.61■■□□□ 1.05
CLN3-221ENST00000566057 RANBP17Q9H2T7 1088 aaKnown RBP21.61■■□□□ 1.05
CLN3-221ENST00000566057 RNF146Q9NTX7 359 aa21.61■■□□□ 1.05
CLN3-221ENST00000566057 COLQQ9Y215 455 aaPredicted RBP21.61■■□□□ 1.05
CLN3-221ENST00000566057 ZNF865P0CJ78 1059 aaPredicted RBP21.6■■□□□ 1.05
CLN3-221ENST00000566057 ALAS1P13196 640 aa21.6■■□□□ 1.05
CLN3-221ENST00000566057 NT5C2P49902 561 aa21.6■■□□□ 1.05
CLN3-221ENST00000566057 ZNF543Q08ER8 600 aa21.6■■□□□ 1.05
CLN3-221ENST00000566057 IQCA1Q86XH1 822 aa21.6■■□□□ 1.05
CLN3-221ENST00000566057 ENAHQ8N8S7 591 aaPredicted RBP21.6■■□□□ 1.05
CLN3-221ENST00000566057 ANKS1AQ92625 1134 aa21.6■■□□□ 1.05
CLN3-221ENST00000566057 ZSCAN10Q96SZ4 725 aaPredicted RBP21.6■■□□□ 1.05
CLN3-221ENST00000566057 ACAD9Q9H845 621 aa21.6■■□□□ 1.05
CLN3-221ENST00000566057 MYH6P13533 1939 aa21.59■■□□□ 1.05
CLN3-221ENST00000566057 SNAI1O95863 264 aaPredicted RBP21.59■■□□□ 1.05
CLN3-221ENST00000566057 CNTN2Q02246 1040 aa21.59■■□□□ 1.05
CLN3-221ENST00000566057 TKFCQ3LXA3 575 aa21.59■■□□□ 1.05
CLN3-221ENST00000566057 MUM1L1Q5H9M0 696 aa21.59■■□□□ 1.05
CLN3-221ENST00000566057 GJC2Q5T442 439 aaPredicted RBP21.59■■□□□ 1.05
CLN3-221ENST00000566057 MAMDC4Q6UXC1 1216 aa21.59■■□□□ 1.05
CLN3-221ENST00000566057 CENPQQ7L2Z9 268 aaPredicted RBP21.59■■□□□ 1.05
CLN3-221ENST00000566057 MSL3Q8N5Y2 521 aaKnown RBP21.59■■□□□ 1.05
CLN3-221ENST00000566057 KRT23Q9C075 422 aa21.59■■□□□ 1.05
CLN3-221ENST00000566057 A1CFQ9NQ94 594 aaKnown RBP21.59■■□□□ 1.05
CLN3-221ENST00000566057 NRBP1Q9UHY1 535 aa21.59■■□□□ 1.05
CLN3-221ENST00000566057 TAF6LQ9Y6J9 622 aa21.59■■□□□ 1.05
CLN3-221ENST00000566057 ICAM1P05362 532 aa21.58■■□□□ 1.05
CLN3-221ENST00000566057 CYP21A2P08686 494 aa21.58■■□□□ 1.05
CLN3-221ENST00000566057 GOLGA8HP0CJ92 632 aa21.58■■□□□ 1.05
CLN3-221ENST00000566057 CCDC178Q5BJE1 867 aa21.58■■□□□ 1.05
CLN3-221ENST00000566057 HABP4Q5JVS0 413 aaKnown RBP21.58■■□□□ 1.05
CLN3-221ENST00000566057 CYB5R4Q7L1T6 521 aa21.58■■□□□ 1.05
CLN3-221ENST00000566057 ZNF467Q7Z7K2 595 aaPredicted RBP21.58■■□□□ 1.05
CLN3-221ENST00000566057 PNMA1Q8ND90 353 aa21.58■■□□□ 1.05
CLN3-221ENST00000566057 SENP6Q9GZR1 1112 aaPredicted RBP21.58■■□□□ 1.05
CLN3-221ENST00000566057 CNNM2Q9H8M5 875 aa21.58■■□□□ 1.05
CLN3-221ENST00000566057 CCPG1Q9ULG6 757 aa21.58■■□□□ 1.05
CLN3-221ENST00000566057 TNKSO95271 1327 aa21.57■■□□□ 1.04
CLN3-221ENST00000566057 SYNGAP1Q96PV0 1343 aa21.57■■□□□ 1.04
CLN3-221ENST00000566057 DNM1LO00429 736 aa21.57■■□□□ 1.04
CLN3-221ENST00000566057 LRRC26Q2I0M4 334 aa21.57■■□□□ 1.04
CLN3-221ENST00000566057 C7orf61Q8IZ16 206 aa21.57■■□□□ 1.04
CLN3-221ENST00000566057 FAM133AQ8N9E0 248 aa21.57■■□□□ 1.04
CLN3-221ENST00000566057 CPVLQ9H3G5 476 aa21.57■■□□□ 1.04
CLN3-221ENST00000566057 KAT14Q9H8E8 782 aa21.57■■□□□ 1.04
CLN3-221ENST00000566057 CNPY2Q9Y2B0 182 aa21.57■■□□□ 1.04
CLN3-221ENST00000566057 POTEB2H3BUK9 544 aa21.56■■□□□ 1.04
CLN3-221ENST00000566057 CHRDL2Q6WN34 429 aa21.56■■□□□ 1.04
CLN3-221ENST00000566057 ARRDC4Q8NCT1 418 aa21.56■■□□□ 1.04
CLN3-221ENST00000566057 LENG1Q96BZ8 264 aaPredicted RBP21.56■■□□□ 1.04
CLN3-221ENST00000566057 U3KPZ7 1027 aaPredicted RBP21.56■■□□□ 1.04
CLN3-221ENST00000566057 SOWAHBA6NEL2 793 aa21.55■■□□□ 1.04
CLN3-221ENST00000566057 MYCNP04198 464 aaPredicted RBP21.55■■□□□ 1.04
CLN3-221ENST00000566057 LRRC41Q15345 812 aa21.55■■□□□ 1.04
CLN3-221ENST00000566057 MAP4K1Q92918 833 aa21.55■■□□□ 1.04
CLN3-221ENST00000566057 UBA5Q9GZZ9 404 aa21.55■■□□□ 1.04
CLN3-221ENST00000566057 CDKN2AIPQ9NXV6 580 aaPredicted RBP21.55■■□□□ 1.04
CLN3-221ENST00000566057 CYP39A1Q9NYL5 469 aa21.55■■□□□ 1.04
CLN3-221ENST00000566057 ASTN1O14525 1302 aa21.55■■□□□ 1.04
CLN3-221ENST00000566057 RARBP10826 455 aa21.54■■□□□ 1.04
CLN3-221ENST00000566057 AKR1A1P14550 325 aa21.54■■□□□ 1.04
CLN3-221ENST00000566057 SEC23AQ15436 765 aa21.54■■□□□ 1.04
CLN3-221ENST00000566057 GPATCH4Q5T3I0 446 aaKnown RBP21.54■■□□□ 1.04
CLN3-221ENST00000566057 STOX1Q6ZVD7 989 aa21.54■■□□□ 1.04
CLN3-221ENST00000566057 ARMCX2Q7L311 632 aa21.54■■□□□ 1.04
CLN3-221ENST00000566057 CCDC144CPQ8IYA2 1237 aa21.54■■□□□ 1.04
CLN3-221ENST00000566057 UBAC1Q9BSL1 405 aa21.54■■□□□ 1.04
CLN3-221ENST00000566057 XPNPEP3Q9NQH7 507 aa21.54■■□□□ 1.04
CLN3-221ENST00000566057 PCDH10Q9P2E7 1040 aa21.54■■□□□ 1.04
CLN3-221ENST00000566057 ZMYND8Q9ULU4 1186 aaPredicted RBP21.54■■□□□ 1.04
CLN3-221ENST00000566057 DDX49Q9Y6V7 483 aaKnown RBP21.54■■□□□ 1.04
CLN3-221ENST00000566057 BAZ2BQ9UIF8 2168 aaKnown RBP21.53■■□□□ 1.04
CLN3-221ENST00000566057 E7EWF7 191 aa21.53■■□□□ 1.04
CLN3-221ENST00000566057 PGK1P00558 417 aa21.53■■□□□ 1.04
CLN3-221ENST00000566057 ATN1P54259 1190 aaPredicted RBP21.53■■□□□ 1.04
CLN3-221ENST00000566057 ACVR2BQ13705 512 aa21.53■■□□□ 1.04
CLN3-221ENST00000566057 PURBQ96QR8 312 aaKnown RBP21.53■■□□□ 1.04
CLN3-221ENST00000566057 KATNBL1Q9H079 304 aa21.53■■□□□ 1.04
CLN3-221ENST00000566057 PRO3102Q9H379 93 aa21.53■■□□□ 1.04
CLN3-221ENST00000566057 RBM27Q9P2N5 1060 aaKnown RBP21.53■■□□□ 1.04
CLN3-221ENST00000566057 ZHX1Q9UKY1 873 aaPredicted RBP21.53■■□□□ 1.04
CLN3-221ENST00000566057 KBTBD13C9JR72 458 aa21.52■■□□□ 1.04
CLN3-221ENST00000566057 NFIBO00712 420 aa21.52■■□□□ 1.04
CLN3-221ENST00000566057 ADCY6O43306 1168 aa21.52■■□□□ 1.04
CLN3-221ENST00000566057 SYN1P17600 705 aa21.52■■□□□ 1.04
CLN3-221ENST00000566057 TRDNQ13061 729 aa21.52■■□□□ 1.04
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms