RNA–Protein interactions for RNA: ENST00000566040.1

CLN3-220, Transcript of CLN3, battenin, humanhuman

TSL 4

Gene CLN3, Length 544 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-220ENST00000566040 EPB41L2O43491 1005 aaKnown RBP11.54□□□□□ -0.56
CLN3-220ENST00000566040 PGK2P07205 417 aa11.54□□□□□ -0.56
CLN3-220ENST00000566040 MNX1P50219 401 aaPredicted RBP11.54□□□□□ -0.56
CLN3-220ENST00000566040 ZNF792Q3KQV3 632 aa11.54□□□□□ -0.56
CLN3-220ENST00000566040 SLC9C1Q4G0N8 1177 aa11.54□□□□□ -0.56
CLN3-220ENST00000566040 TMEM67Q5HYA8 995 aa11.54□□□□□ -0.56
CLN3-220ENST00000566040 IFIT1BQ5T764 474 aaKnown RBP11.54□□□□□ -0.56
CLN3-220ENST00000566040 RALYLQ86SE5 291 aaKnown RBP11.54□□□□□ -0.56
CLN3-220ENST00000566040 SGMS1Q86VZ5 419 aa11.54□□□□□ -0.56
CLN3-220ENST00000566040 ZNF654Q8IZM8 581 aa11.54□□□□□ -0.56
CLN3-220ENST00000566040 ABRAQ8N0Z2 381 aa11.54□□□□□ -0.56
CLN3-220ENST00000566040 CPXCR1Q8N123 301 aa11.54□□□□□ -0.56
CLN3-220ENST00000566040 CHURC1Q8WUH1 139 aa11.54□□□□□ -0.56
CLN3-220ENST00000566040 SOCS4Q8WXH5 440 aa11.54□□□□□ -0.56
CLN3-220ENST00000566040 PURBQ96QR8 312 aaKnown RBP11.54□□□□□ -0.56
CLN3-220ENST00000566040 NUDT12Q9BQG2 462 aa11.54□□□□□ -0.56
CLN3-220ENST00000566040 UBAC1Q9BSL1 405 aa11.54□□□□□ -0.56
CLN3-220ENST00000566040 MTA3Q9BTC8 594 aa11.54□□□□□ -0.56
CLN3-220ENST00000566040 MROH8Q9H579 483 aa11.54□□□□□ -0.56
CLN3-220ENST00000566040 KAT14Q9H8E8 782 aa11.54□□□□□ -0.56
CLN3-220ENST00000566040 JMJD4Q9H9V9 463 aa11.54□□□□□ -0.56
CLN3-220ENST00000566040 PAK6Q9NQU5 681 aaPredicted RBP11.54□□□□□ -0.56
CLN3-220ENST00000566040 FAM217BQ9NTX9 383 aaPredicted RBP11.54□□□□□ -0.56
CLN3-220ENST00000566040 NFIBO00712 420 aa11.53□□□□□ -0.56
CLN3-220ENST00000566040 CAPN15O75808 1086 aa11.53□□□□□ -0.56
CLN3-220ENST00000566040 PLEKHA8P1O95397 391 aa11.53□□□□□ -0.56
CLN3-220ENST00000566040 SLC25A27O95847 323 aa11.53□□□□□ -0.56
CLN3-220ENST00000566040 HMGCRP04035 888 aa11.53□□□□□ -0.56
CLN3-220ENST00000566040 ICAM1P05362 532 aa11.53□□□□□ -0.56
CLN3-220ENST00000566040 RXRAP19793 462 aa11.53□□□□□ -0.56
CLN3-220ENST00000566040 MCM5P33992 734 aa11.53□□□□□ -0.56
CLN3-220ENST00000566040 LIFRP42702 1097 aa11.53□□□□□ -0.56
CLN3-220ENST00000566040 RGS19P49795 217 aa11.53□□□□□ -0.56
CLN3-220ENST00000566040 CCNA1P78396 465 aa11.53□□□□□ -0.56
CLN3-220ENST00000566040 CACNB2Q08289 660 aaPredicted RBP11.53□□□□□ -0.56
CLN3-220ENST00000566040 FUT2Q10981 343 aa11.53□□□□□ -0.56
CLN3-220ENST00000566040 WTAPQ15007 396 aa11.53□□□□□ -0.56
CLN3-220ENST00000566040 ASPRV1Q53RT3 343 aa11.53□□□□□ -0.56
CLN3-220ENST00000566040 CCDC178Q5BJE1 867 aa11.53□□□□□ -0.56
CLN3-220ENST00000566040 GPATCH4Q5T3I0 446 aaKnown RBP11.53□□□□□ -0.56
CLN3-220ENST00000566040 CCDC174Q6PII3 467 aa11.53□□□□□ -0.56
CLN3-220ENST00000566040 UBE2Q1Q7Z7E8 422 aa11.53□□□□□ -0.56
CLN3-220ENST00000566040 NCAPG2Q86XI2 1143 aa11.53□□□□□ -0.56
CLN3-220ENST00000566040 RAB11FIP4Q86YS3 637 aa11.53□□□□□ -0.56
CLN3-220ENST00000566040 ADGRF4Q8IZF3 695 aa11.53□□□□□ -0.56
CLN3-220ENST00000566040 RAET1EQ8TD07 263 aa11.53□□□□□ -0.56
CLN3-220ENST00000566040 MAML3Q96JK9 1138 aa11.53□□□□□ -0.56
CLN3-220ENST00000566040 NEK1Q96PY6 1258 aa11.53□□□□□ -0.56
CLN3-220ENST00000566040 KATNBL1Q9H079 304 aa11.53□□□□□ -0.56
CLN3-220ENST00000566040 RIOX1Q9H6W3 641 aa11.53□□□□□ -0.56
CLN3-220ENST00000566040 A1CFQ9NQ94 594 aaKnown RBP11.53□□□□□ -0.56
CLN3-220ENST00000566040 SOWAHBA6NEL2 793 aa11.52□□□□□ -0.57
CLN3-220ENST00000566040 CCDC85CA6NKD9 419 aa11.52□□□□□ -0.57
CLN3-220ENST00000566040 ADCY6O43306 1168 aa11.52□□□□□ -0.57
CLN3-220ENST00000566040 MYCP01106 439 aaPredicted RBP11.52□□□□□ -0.57
CLN3-220ENST00000566040 CYBAP13498 195 aa11.52□□□□□ -0.57
CLN3-220ENST00000566040 CCL5P13501 91 aa11.52□□□□□ -0.57
CLN3-220ENST00000566040 HOXD10P28358 340 aa11.52□□□□□ -0.57
CLN3-220ENST00000566040 CCND3P30281 292 aaPredicted RBP11.52□□□□□ -0.57
CLN3-220ENST00000566040 RGS2P41220 211 aa11.52□□□□□ -0.57
CLN3-220ENST00000566040 CNTN2Q02246 1040 aa11.52□□□□□ -0.57
CLN3-220ENST00000566040 TRDNQ13061 729 aa11.52□□□□□ -0.57
CLN3-220ENST00000566040 ARHGEF6Q15052 776 aa11.52□□□□□ -0.57
CLN3-220ENST00000566040 QRICH1Q2TAL8 776 aa11.52□□□□□ -0.57
CLN3-220ENST00000566040 APOA5Q6Q788 366 aa11.52□□□□□ -0.57
CLN3-220ENST00000566040 CASC1Q6TDU7 716 aa11.52□□□□□ -0.57
CLN3-220ENST00000566040 FAM133AQ8N9E0 248 aa11.52□□□□□ -0.57
CLN3-220ENST00000566040 TMEM87BQ96K49 555 aa11.52□□□□□ -0.57
CLN3-220ENST00000566040 RNF146Q9NTX7 359 aa11.52□□□□□ -0.57
CLN3-220ENST00000566040 KLRF2D3W0D1 207 aa11.51□□□□□ -0.57
CLN3-220ENST00000566040 STRNO43815 780 aa11.51□□□□□ -0.57
CLN3-220ENST00000566040 ZBED4O75132 1171 aa11.51□□□□□ -0.57
CLN3-220ENST00000566040 DDAH1O94760 285 aa11.51□□□□□ -0.57
CLN3-220ENST00000566040 REC8O95072 547 aa11.51□□□□□ -0.57
CLN3-220ENST00000566040 PARP1P09874 1014 aaKnown RBP11.51□□□□□ -0.57
CLN3-220ENST00000566040 FDX1P10109 184 aa11.51□□□□□ -0.57
CLN3-220ENST00000566040 EN2P19622 333 aaPredicted RBP11.51□□□□□ -0.57
CLN3-220ENST00000566040 RPS6KB1P23443 525 aa11.51□□□□□ -0.57
CLN3-220ENST00000566040 CYP2C19P33261 490 aa11.51□□□□□ -0.57
CLN3-220ENST00000566040 TOB2Q14106 344 aaPredicted RBP11.51□□□□□ -0.57
CLN3-220ENST00000566040 CDC37Q16543 378 aaPredicted RBP11.51□□□□□ -0.57
CLN3-220ENST00000566040 WDR78Q5VTH9 848 aa11.51□□□□□ -0.57
CLN3-220ENST00000566040 OLFML2BQ68BL8 750 aa11.51□□□□□ -0.57
CLN3-220ENST00000566040 SLC30A10Q6XR72 485 aa11.51□□□□□ -0.57
CLN3-220ENST00000566040 DHX32Q7L7V1 743 aaKnown RBP11.51□□□□□ -0.57
CLN3-220ENST00000566040 FBXL16Q8N461 479 aa11.51□□□□□ -0.57
CLN3-220ENST00000566040 SRBD1Q8N5C6 995 aaKnown RBP11.51□□□□□ -0.57
CLN3-220ENST00000566040 TBC1D5Q92609 795 aa11.51□□□□□ -0.57
CLN3-220ENST00000566040 JAKMIP1Q96N16 626 aaKnown RBP11.51□□□□□ -0.57
CLN3-220ENST00000566040 MMP19Q99542 508 aa11.51□□□□□ -0.57
CLN3-220ENST00000566040 KIF2CQ99661 725 aa11.51□□□□□ -0.57
CLN3-220ENST00000566040 ZSWIM6Q9HCJ5 1215 aa11.51□□□□□ -0.57
CLN3-220ENST00000566040 HOMER2Q9NSB8 354 aa11.51□□□□□ -0.57
CLN3-220ENST00000566040 COL20A1Q9P218 1284 aa11.51□□□□□ -0.57
CLN3-220ENST00000566040 CNTNAP5Q8WYK1 1306 aa11.51□□□□□ -0.57
CLN3-220ENST00000566040 SNAI1O95863 264 aaPredicted RBP11.5□□□□□ -0.57
CLN3-220ENST00000566040 FCER1AP12319 257 aa11.5□□□□□ -0.57
CLN3-220ENST00000566040 ALAS1P13196 640 aa11.5□□□□□ -0.57
CLN3-220ENST00000566040 PRKAR2AP13861 404 aaKnown RBP11.5□□□□□ -0.57
CLN3-220ENST00000566040 ZKSCAN1P17029 563 aaPredicted RBP11.5□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 13 ms