RNA–Protein interactions for RNA: ENST00000560620.1

CTDSPL2-209, Transcript of CTD small phosphatase like 2, humanhuman

TSL 3

Gene CTDSPL2, Length 863 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTDSPL2-209ENST00000560620 RNF146Q9NTX7 359 aa15.2■□□□□ 0.02
CTDSPL2-209ENST00000560620 CCPG1Q9ULG6 757 aa15.2■□□□□ 0.02
CTDSPL2-209ENST00000560620 IFIT3O14879 490 aaKnown RBP15.19■□□□□ 0.02
CTDSPL2-209ENST00000560620 DHX16O60231 1041 aaKnown RBP15.19■□□□□ 0.02
CTDSPL2-209ENST00000560620 CDC45O75419 566 aa15.19■□□□□ 0.02
CTDSPL2-209ENST00000560620 CAPN2P17655 700 aa15.19■□□□□ 0.02
CTDSPL2-209ENST00000560620 ZNF543Q08ER8 600 aa15.19■□□□□ 0.02
CTDSPL2-209ENST00000560620 SART3Q15020 963 aaKnown RBP15.19■□□□□ 0.02
CTDSPL2-209ENST00000560620 GPATCH4Q5T3I0 446 aaKnown RBP15.19■□□□□ 0.02
CTDSPL2-209ENST00000560620 CYB5R4Q7L1T6 521 aa15.19■□□□□ 0.02
CTDSPL2-209ENST00000560620 TRERF1Q96PN7 1200 aa15.19■□□□□ 0.02
CTDSPL2-209ENST00000560620 HTATIP2Q9BUP3 242 aa15.19■□□□□ 0.02
CTDSPL2-209ENST00000560620 CRISPLD2Q9H0B8 497 aa15.19■□□□□ 0.02
CTDSPL2-209ENST00000560620 PLXNA1Q9UIW2 1896 aa15.18■□□□□ 0.02
CTDSPL2-209ENST00000560620 MYCNP04198 464 aaPredicted RBP15.18■□□□□ 0.02
CTDSPL2-209ENST00000560620 ZNF792Q3KQV3 632 aa15.18■□□□□ 0.02
CTDSPL2-209ENST00000560620 TKFCQ3LXA3 575 aa15.18■□□□□ 0.02
CTDSPL2-209ENST00000560620 PRAMEF19Q5SWL8 479 aa15.18■□□□□ 0.02
CTDSPL2-209ENST00000560620 CHST3Q7LGC8 479 aa15.18■□□□□ 0.02
CTDSPL2-209ENST00000560620 PAWRQ96IZ0 340 aaKnown RBP15.18■□□□□ 0.02
CTDSPL2-209ENST00000560620 UBA5Q9GZZ9 404 aa15.18■□□□□ 0.02
CTDSPL2-209ENST00000560620 LSG1Q9H089 658 aaKnown RBP15.18■□□□□ 0.02
CTDSPL2-209ENST00000560620 PPP4R2Q9NY27 417 aa15.18■□□□□ 0.02
CTDSPL2-209ENST00000560620 CNPY2Q9Y2B0 182 aa15.18■□□□□ 0.02
CTDSPL2-209ENST00000560620 DIS3Q9Y2L1 958 aaKnown RBP15.18■□□□□ 0.02
CTDSPL2-209ENST00000560620 TAF6LQ9Y6J9 622 aa15.18■□□□□ 0.02
CTDSPL2-209ENST00000560620 ZNF536O15090 1300 aa15.17■□□□□ 0.02
CTDSPL2-209ENST00000560620 MSCO60682 206 aa15.17■□□□□ 0.02
CTDSPL2-209ENST00000560620 ICAM1P05362 532 aa15.17■□□□□ 0.02
CTDSPL2-209ENST00000560620 PARP1P09874 1014 aaKnown RBP15.17■□□□□ 0.02
CTDSPL2-209ENST00000560620 CYBAP13498 195 aa15.17■□□□□ 0.02
CTDSPL2-209ENST00000560620 ANO1Q5XXA6 986 aa15.17■□□□□ 0.02
CTDSPL2-209ENST00000560620 BTNL9Q6UXG8 535 aa15.17■□□□□ 0.02
CTDSPL2-209ENST00000560620 NSMFQ6X4W1 530 aa15.17■□□□□ 0.02
CTDSPL2-209ENST00000560620 NECAB2Q7Z6G3 386 aa15.17■□□□□ 0.02
CTDSPL2-209ENST00000560620 ANKLE1Q8NAG6 615 aa15.17■□□□□ 0.02
CTDSPL2-209ENST00000560620 DIS3LQ8TF46 1054 aaKnown RBP15.17■□□□□ 0.02
CTDSPL2-209ENST00000560620 TINF2Q9BSI4 451 aa15.17■□□□□ 0.02
CTDSPL2-209ENST00000560620 RANBP17Q9H2T7 1088 aaKnown RBP15.17■□□□□ 0.02
CTDSPL2-209ENST00000560620 DDX20Q9UHI6 824 aaKnown RBP15.17■□□□□ 0.02
CTDSPL2-209ENST00000560620 OGDHLQ9ULD0 1010 aa15.17■□□□□ 0.02
CTDSPL2-209ENST00000560620 POTEB2H3BUK9 544 aa15.16■□□□□ 0.02
CTDSPL2-209ENST00000560620 SNHG28P0DPA3 235 aa15.16■□□□□ 0.02
CTDSPL2-209ENST00000560620 WTAPQ15007 396 aa15.16■□□□□ 0.02
CTDSPL2-209ENST00000560620 ASPRV1Q53RT3 343 aa15.16■□□□□ 0.02
CTDSPL2-209ENST00000560620 MUM1L1Q5H9M0 696 aa15.16■□□□□ 0.02
CTDSPL2-209ENST00000560620 TMEM67Q5HYA8 995 aa15.16■□□□□ 0.02
CTDSPL2-209ENST00000560620 TRPV1Q8NER1 839 aa15.16■□□□□ 0.02
CTDSPL2-209ENST00000560620 ANKS1AQ92625 1134 aa15.16■□□□□ 0.02
CTDSPL2-209ENST00000560620 CPVLQ9H3G5 476 aa15.16■□□□□ 0.02
CTDSPL2-209ENST00000560620 VAT1LQ9HCJ6 419 aa15.16■□□□□ 0.02
CTDSPL2-209ENST00000560620 PDE4DIPQ5VU43 2346 aa15.16■□□□□ 0.02
CTDSPL2-209ENST00000560620 PFASO15067 1338 aa15.16■□□□□ 0.02
CTDSPL2-209ENST00000560620 SLC27A2O14975 620 aa15.15■□□□□ 0.02
CTDSPL2-209ENST00000560620 SEPT4O43236 478 aa15.15■□□□□ 0.02
CTDSPL2-209ENST00000560620 TAL1P17542 331 aaPredicted RBP15.15■□□□□ 0.02
CTDSPL2-209ENST00000560620 CNTN2Q02246 1040 aa15.15■□□□□ 0.02
CTDSPL2-209ENST00000560620 USH1GQ495M9 461 aa15.15■□□□□ 0.02
CTDSPL2-209ENST00000560620 PRPF38BQ5VTL8 546 aaKnown RBP15.15■□□□□ 0.02
CTDSPL2-209ENST00000560620 RNF20Q5VTR2 975 aa15.15■□□□□ 0.02
CTDSPL2-209ENST00000560620 CREB3L3Q68CJ9 461 aa15.15■□□□□ 0.02
CTDSPL2-209ENST00000560620 LHX8Q68G74 356 aa15.15■□□□□ 0.02
CTDSPL2-209ENST00000560620 STOX1Q6ZVD7 989 aa15.15■□□□□ 0.02
CTDSPL2-209ENST00000560620 C11orf49Q9H6J7 331 aa15.15■□□□□ 0.02
CTDSPL2-209ENST00000560620 A1CFQ9NQ94 594 aaKnown RBP15.15■□□□□ 0.02
CTDSPL2-209ENST00000560620 DNAJC25-GNG10A0A024R161 153 aa15.14■□□□□ 0.01
CTDSPL2-209ENST00000560620 PTPDC1A2A3K4 754 aa15.14■□□□□ 0.01
CTDSPL2-209ENST00000560620 SEC23AQ15436 765 aa15.14■□□□□ 0.01
CTDSPL2-209ENST00000560620 NFXL1Q6ZNB6 911 aa15.14■□□□□ 0.01
CTDSPL2-209ENST00000560620 UBE2Q1Q7Z7E8 422 aa15.14■□□□□ 0.01
CTDSPL2-209ENST00000560620 ADGRF4Q8IZF3 695 aa15.14■□□□□ 0.01
CTDSPL2-209ENST00000560620 ZHX1Q9UKY1 873 aaPredicted RBP15.14■□□□□ 0.01
CTDSPL2-209ENST00000560620 PNMA2Q9UL42 364 aa15.14■□□□□ 0.01
CTDSPL2-209ENST00000560620 PRC1O43663 620 aa15.13■□□□□ 0.01
CTDSPL2-209ENST00000560620 EVI5O60447 810 aa15.13■□□□□ 0.01
CTDSPL2-209ENST00000560620 RARBP10826 455 aa15.13■□□□□ 0.01
CTDSPL2-209ENST00000560620 MCM5P33992 734 aa15.13■□□□□ 0.01
CTDSPL2-209ENST00000560620 CDC37Q16543 378 aaPredicted RBP15.13■□□□□ 0.01
CTDSPL2-209ENST00000560620 ERICH6BQ5W0A0 696 aa15.13■□□□□ 0.01
CTDSPL2-209ENST00000560620 CATIPQ7Z7H3 387 aa15.13■□□□□ 0.01
CTDSPL2-209ENST00000560620 MSL3Q8N5Y2 521 aaKnown RBP15.13■□□□□ 0.01
CTDSPL2-209ENST00000560620 CYP39A1Q9NYL5 469 aa15.13■□□□□ 0.01
CTDSPL2-209ENST00000560620 NRBP1Q9UHY1 535 aa15.13■□□□□ 0.01
CTDSPL2-209ENST00000560620 SYNGAP1Q96PV0 1343 aa15.13■□□□□ 0.01
CTDSPL2-209ENST00000560620 KBTBD13C9JR72 458 aa15.12■□□□□ 0.01
CTDSPL2-209ENST00000560620 KLRF2D3W0D1 207 aa15.12■□□□□ 0.01
CTDSPL2-209ENST00000560620 NFIBO00712 420 aa15.12■□□□□ 0.01
CTDSPL2-209ENST00000560620 IGHA2P01877 340 aa15.12■□□□□ 0.01
CTDSPL2-209ENST00000560620 CALML3P27482 149 aa15.12■□□□□ 0.01
CTDSPL2-209ENST00000560620 NECTIN1Q15223 517 aa15.12■□□□□ 0.01
CTDSPL2-209ENST00000560620 GJC2Q5T442 439 aaPredicted RBP15.12■□□□□ 0.01
CTDSPL2-209ENST00000560620 DHX30Q7L2E3 1194 aaKnown RBP eCLIP15.12■□□□□ 0.01
CTDSPL2-209ENST00000560620 ARMCX2Q7L311 632 aa15.12■□□□□ 0.01
CTDSPL2-209ENST00000560620 ZNF467Q7Z7K2 595 aaPredicted RBP15.12■□□□□ 0.01
CTDSPL2-209ENST00000560620 CCDC144CPQ8IYA2 1237 aa15.12■□□□□ 0.01
CTDSPL2-209ENST00000560620 MB21D2Q8IYB1 491 aaPredicted RBP15.12■□□□□ 0.01
CTDSPL2-209ENST00000560620 ARRDC4Q8NCT1 418 aa15.12■□□□□ 0.01
CTDSPL2-209ENST00000560620 NUP133Q8WUM0 1156 aa15.12■□□□□ 0.01
CTDSPL2-209ENST00000560620 XPNPEP3Q9NQH7 507 aa15.12■□□□□ 0.01
CTDSPL2-209ENST00000560620 CDKN2AIPQ9NXV6 580 aaPredicted RBP15.12■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms