RNA–Protein interactions for RNA: ENST00000558561.1

SPG11-211, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 3

Gene SPG11, Length 555 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-211ENST00000558561 PARD3Q8TEW0 1356 aa5.64□□□□□ -1.51
SPG11-211ENST00000558561 PALLDQ8WX93 1383 aa5.64□□□□□ -1.51
SPG11-211ENST00000558561 CASZ1Q86V15 1759 aa5.63□□□□□ -1.51
SPG11-211ENST00000558561 SCN11AQ9UI33 1791 aa5.63□□□□□ -1.51
SPG11-211ENST00000558561 TMPRSS2O15393 492 aa5.63□□□□□ -1.51
SPG11-211ENST00000558561 INPP5AQ14642 412 aa5.63□□□□□ -1.51
SPG11-211ENST00000558561 ZNF394Q53GI3 561 aa5.63□□□□□ -1.51
SPG11-211ENST00000558561 ZC3H12AQ5D1E8 599 aaKnown RBP5.63□□□□□ -1.51
SPG11-211ENST00000558561 C1orf141Q5JVX7 400 aa5.63□□□□□ -1.51
SPG11-211ENST00000558561 INTS5Q6P9B9 1019 aaKnown RBP5.63□□□□□ -1.51
SPG11-211ENST00000558561 BNC2Q6ZN30 1099 aaPredicted RBP5.63□□□□□ -1.51
SPG11-211ENST00000558561 C12orf40Q86WS4 652 aa5.63□□□□□ -1.51
SPG11-211ENST00000558561 UTP4Q969X6 686 aaKnown RBP5.63□□□□□ -1.51
SPG11-211ENST00000558561 MIR1-1HGQ9H1L0 117 aa5.63□□□□□ -1.51
SPG11-211ENST00000558561 PRKRIP1Q9H875 184 aaPredicted RBP5.63□□□□□ -1.51
SPG11-211ENST00000558561 SLC52A2Q9HAB3 445 aa5.63□□□□□ -1.51
SPG11-211ENST00000558561 SPON1Q9HCB6 807 aa5.63□□□□□ -1.51
SPG11-211ENST00000558561 DISC1Q9NRI5 854 aa5.63□□□□□ -1.51
SPG11-211ENST00000558561 CRIM1Q9NZV1 1036 aa5.63□□□□□ -1.51
SPG11-211ENST00000558561 SRP68Q9UHB9 627 aaKnown RBP5.63□□□□□ -1.51
SPG11-211ENST00000558561 PCDHGB7Q9Y5F8 929 aa5.63□□□□□ -1.51
SPG11-211ENST00000558561 USP16Q9Y5T5 823 aa5.63□□□□□ -1.51
SPG11-211ENST00000558561 ACTL7BQ9Y614 415 aa5.63□□□□□ -1.51
SPG11-211ENST00000558561 PAPPAQ13219 1627 aa5.63□□□□□ -1.51
SPG11-211ENST00000558561 DLG5Q8TDM6 1919 aa5.62□□□□□ -1.51
SPG11-211ENST00000558561 LOC100996750A0A140TA64 210 aa5.62□□□□□ -1.51
SPG11-211ENST00000558561 DCDC2CA8MYV0 355 aa5.62□□□□□ -1.51
SPG11-211ENST00000558561 GAS2O43903 313 aaKnown RBP5.62□□□□□ -1.51
SPG11-211ENST00000558561 A1BGP04217 495 aa5.62□□□□□ -1.51
SPG11-211ENST00000558561 BMP3P12645 472 aa5.62□□□□□ -1.51
SPG11-211ENST00000558561 ASPAP45381 313 aa5.62□□□□□ -1.51
SPG11-211ENST00000558561 USP11P51784 963 aa5.62□□□□□ -1.51
SPG11-211ENST00000558561 ID3Q02535 119 aa5.62□□□□□ -1.51
SPG11-211ENST00000558561 LMNB2Q03252 620 aa5.62□□□□□ -1.51
SPG11-211ENST00000558561 PWP1Q13610 501 aa5.62□□□□□ -1.51
SPG11-211ENST00000558561 SGO2Q562F6 1265 aa5.62□□□□□ -1.51
SPG11-211ENST00000558561 SCARA3Q6AZY7 606 aa5.62□□□□□ -1.51
SPG11-211ENST00000558561 CDPF1Q6NVV7 123 aa5.62□□□□□ -1.51
SPG11-211ENST00000558561 NT5DC4Q86YG4 428 aa5.62□□□□□ -1.51
SPG11-211ENST00000558561 TRIM42Q8IWZ5 723 aa5.62□□□□□ -1.51
SPG11-211ENST00000558561 NLGN2Q8NFZ4 835 aa5.62□□□□□ -1.51
SPG11-211ENST00000558561 FBLIM1Q8WUP2 373 aa5.62□□□□□ -1.51
SPG11-211ENST00000558561 ZNF496Q96IT1 587 aaPredicted RBP5.62□□□□□ -1.51
SPG11-211ENST00000558561 RHOVQ96L33 236 aa5.62□□□□□ -1.51
SPG11-211ENST00000558561 MYRFLQ96LU7 910 aa5.62□□□□□ -1.51
SPG11-211ENST00000558561 FANCD2OSQ96PS1 177 aa5.62□□□□□ -1.51
SPG11-211ENST00000558561 KRTAP4-6Q9BYQ5 205 aa5.62□□□□□ -1.51
SPG11-211ENST00000558561 FAM105AQ9NUU6 356 aa5.62□□□□□ -1.51
SPG11-211ENST00000558561 ADAMTS1Q9UHI8 967 aa5.62□□□□□ -1.51
SPG11-211ENST00000558561 SYNGAP1Q96PV0 1343 aa5.62□□□□□ -1.51
SPG11-211ENST00000558561 GNAT3A8MTJ3 354 aa5.61□□□□□ -1.51
SPG11-211ENST00000558561 F13A1P00488 732 aa5.61□□□□□ -1.51
SPG11-211ENST00000558561 IGHA1P01876 353 aa5.61□□□□□ -1.51
SPG11-211ENST00000558561 GARTP22102 1010 aa5.61□□□□□ -1.51
SPG11-211ENST00000558561 ZEB1P37275 1124 aaPredicted RBP5.61□□□□□ -1.51
SPG11-211ENST00000558561 EIF4A3P38919 411 aaKnown RBP5.61□□□□□ -1.51
SPG11-211ENST00000558561 RACK1P63244 317 aaKnown RBP5.61□□□□□ -1.51
SPG11-211ENST00000558561 FBXL19Q6PCT2 694 aa5.61□□□□□ -1.51
SPG11-211ENST00000558561 LRFN4Q6PJG9 635 aa5.61□□□□□ -1.51
SPG11-211ENST00000558561 USP48Q86UV5 1035 aa5.61□□□□□ -1.51
SPG11-211ENST00000558561 FAM20CQ8IXL6 584 aa5.61□□□□□ -1.51
SPG11-211ENST00000558561 GOLM1Q8NBJ4 401 aa5.61□□□□□ -1.51
SPG11-211ENST00000558561 ZNF296Q8WUU4 475 aaPredicted RBP5.61□□□□□ -1.51
SPG11-211ENST00000558561 SMARCC1Q92922 1105 aaPredicted RBP5.61□□□□□ -1.51
SPG11-211ENST00000558561 PLPPR2Q96GM1 343 aa5.61□□□□□ -1.51
SPG11-211ENST00000558561 CFAP53Q96M91 514 aa5.61□□□□□ -1.51
SPG11-211ENST00000558561 SYT17Q9BSW7 474 aa5.61□□□□□ -1.51
SPG11-211ENST00000558561 GSX1Q9H4S2 264 aaPredicted RBP5.61□□□□□ -1.51
SPG11-211ENST00000558561 DDX41Q9UJV9 622 aaKnown RBP5.61□□□□□ -1.51
SPG11-211ENST00000558561 UBR3Q6ZT12 1888 aa5.6□□□□□ -1.51
SPG11-211ENST00000558561 RGPD3A6NKT7 1758 aaPredicted RBP5.6□□□□□ -1.51
SPG11-211ENST00000558561 RGPD4Q7Z3J3 1758 aa5.6□□□□□ -1.51
SPG11-211ENST00000558561 FAM221AA4D161 298 aa5.6□□□□□ -1.51
SPG11-211ENST00000558561 DHX15O43143 795 aaKnown RBP5.6□□□□□ -1.51
SPG11-211ENST00000558561 RPS6KA4O75676 772 aa5.6□□□□□ -1.51
SPG11-211ENST00000558561 FURINP09958 794 aa5.6□□□□□ -1.51
SPG11-211ENST00000558561 CYP19A1P11511 503 aaPredicted RBP5.6□□□□□ -1.51
SPG11-211ENST00000558561 TCF3P15923 654 aa5.6□□□□□ -1.51
SPG11-211ENST00000558561 CANXP27824 592 aaKnown RBP5.6□□□□□ -1.51
SPG11-211ENST00000558561 CRKLP46109 303 aaKnown RBP5.6□□□□□ -1.51
SPG11-211ENST00000558561 RALBP1Q15311 655 aa5.6□□□□□ -1.51
SPG11-211ENST00000558561 KRT24Q2M2I5 525 aa5.6□□□□□ -1.51
SPG11-211ENST00000558561 UVSSAQ2YD98 709 aa5.6□□□□□ -1.51
SPG11-211ENST00000558561 PPM1JQ5JR12 505 aa5.6□□□□□ -1.51
SPG11-211ENST00000558561 SNAP47Q5SQN1 464 aa5.6□□□□□ -1.51
SPG11-211ENST00000558561 PPP1R3FQ6ZSY5 799 aaPredicted RBP5.6□□□□□ -1.51
SPG11-211ENST00000558561 FBXO27Q8NI29 283 aa5.6□□□□□ -1.51
SPG11-211ENST00000558561 MTFR1LQ9H019 292 aa5.6□□□□□ -1.51
SPG11-211ENST00000558561 KCNF1Q9H3M0 494 aa5.6□□□□□ -1.51
SPG11-211ENST00000558561 PPP1R1BQ9UD71 204 aaPredicted RBP5.6□□□□□ -1.51
SPG11-211ENST00000558561 NUDCQ9Y266 331 aa5.6□□□□□ -1.51
SPG11-211ENST00000558561 ZBTB1Q9Y2K1 713 aa5.6□□□□□ -1.51
SPG11-211ENST00000558561 HIF3AQ9Y2N7 669 aa5.6□□□□□ -1.51
SPG11-211ENST00000558561 C4BP0C0L5 1744 aa5.6□□□□□ -1.51
SPG11-211ENST00000558561 C5P01031 1676 aa5.59□□□□□ -1.51
SPG11-211ENST00000558561 BTBD11A6QL63 1104 aa5.59□□□□□ -1.51
SPG11-211ENST00000558561 GFRA2O00451 464 aa5.59□□□□□ -1.51
SPG11-211ENST00000558561 GREM1O60565 184 aa5.59□□□□□ -1.51
SPG11-211ENST00000558561 NEFMP07197 916 aa5.59□□□□□ -1.51
SPG11-211ENST00000558561 HSP90AB1P08238 724 aaKnown RBP5.59□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms