RNA–Protein interactions for RNA: ENST00000558157.5

USP3-206, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 2,439 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-206ENST00000558157 HELLSQ9NRZ9 838 aa12.19□□□□□ -0.46
USP3-206ENST00000558157 NDUFAB1O14561 156 aa12.19□□□□□ -0.46
USP3-206ENST00000558157 MFAP3LO75121 409 aa12.19□□□□□ -0.46
USP3-206ENST00000558157 ZFYP08048 801 aaPredicted RBP12.19□□□□□ -0.46
USP3-206ENST00000558157 DPEP1P16444 411 aa12.19□□□□□ -0.46
USP3-206ENST00000558157 ADD2P35612 726 aa12.19□□□□□ -0.46
USP3-206ENST00000558157 PNOCQ13519 176 aa12.19□□□□□ -0.46
USP3-206ENST00000558157 DPP8Q6V1X1 898 aaPredicted RBP12.19□□□□□ -0.46
USP3-206ENST00000558157 OSBP2Q969R2 916 aa12.19□□□□□ -0.46
USP3-206ENST00000558157 VCPKMTQ9H867 229 aa12.19□□□□□ -0.46
USP3-206ENST00000558157 FAM184BQ9ULE4 1060 aa12.19□□□□□ -0.46
USP3-206ENST00000558157 A0A0G2JLW4 131 aa12.18□□□□□ -0.46
USP3-206ENST00000558157 KLHL33A6NCF5 533 aa12.18□□□□□ -0.46
USP3-206ENST00000558157 PSMD14O00487 310 aa12.18□□□□□ -0.46
USP3-206ENST00000558157 RASSF9O75901 435 aa12.18□□□□□ -0.46
USP3-206ENST00000558157 CLSTN1O94985 981 aa12.18□□□□□ -0.46
USP3-206ENST00000558157 PDE6AP16499 860 aa12.18□□□□□ -0.46
USP3-206ENST00000558157 CCT2P78371 535 aaKnown RBP12.18□□□□□ -0.46
USP3-206ENST00000558157 WASHC4Q2M389 1173 aa12.18□□□□□ -0.46
USP3-206ENST00000558157 SLC9C2Q5TAH2 1124 aa12.18□□□□□ -0.46
USP3-206ENST00000558157 CCDC70Q6NSX1 233 aa12.18□□□□□ -0.46
USP3-206ENST00000558157 METTL16Q86W50 562 aaKnown RBP12.18□□□□□ -0.46
USP3-206ENST00000558157 APPBP2Q92624 585 aa12.18□□□□□ -0.46
USP3-206ENST00000558157 DSCC1Q9BVC3 393 aa12.18□□□□□ -0.46
USP3-206ENST00000558157 SELENOOQ9BVL4 669 aa12.18□□□□□ -0.46
USP3-206ENST00000558157 TMX4Q9H1E5 349 aaPredicted RBP12.18□□□□□ -0.46
USP3-206ENST00000558157 EIF4ENIF1Q9NRA8 985 aaKnown RBP12.18□□□□□ -0.46
USP3-206ENST00000558157 JAG2Q9Y219 1238 aa12.18□□□□□ -0.46
USP3-206ENST00000558157 PCDHA5Q9Y5H7 936 aa12.18□□□□□ -0.46
USP3-206ENST00000558157 PDS5AQ29RF7 1337 aaKnown RBP12.18□□□□□ -0.46
USP3-206ENST00000558157 ZNF532Q9HCE3 1301 aa12.18□□□□□ -0.46
USP3-206ENST00000558157 PBX1P40424 430 aa12.18□□□□□ -0.46
USP3-206ENST00000558157 CDR1P51861 262 aa12.18□□□□□ -0.46
USP3-206ENST00000558157 EMC10Q5UCC4 262 aa12.18□□□□□ -0.46
USP3-206ENST00000558157 ALS2CLQ60I27 953 aa12.18□□□□□ -0.46
USP3-206ENST00000558157 CCNI2Q6ZMN8 369 aaPredicted RBP12.18□□□□□ -0.46
USP3-206ENST00000558157 SGSM3Q96HU1 749 aa12.18□□□□□ -0.46
USP3-206ENST00000558157 SGIP1Q9BQI5 828 aa12.18□□□□□ -0.46
USP3-206ENST00000558157 SNED1Q8TER0 1413 aa12.17□□□□□ -0.46
USP3-206ENST00000558157 TCRBV5S4A2TA0A5A2 114 aa12.17□□□□□ -0.46
USP3-206ENST00000558157 POLR3DP05423 398 aaPredicted RBP12.17□□□□□ -0.46
USP3-206ENST00000558157 EZRP15311 586 aaKnown RBP12.17□□□□□ -0.46
USP3-206ENST00000558157 KCNA3P22001 575 aa12.17□□□□□ -0.46
USP3-206ENST00000558157 ACTN3Q08043 901 aaPredicted RBP12.17□□□□□ -0.46
USP3-206ENST00000558157 MAP3K12Q12852 859 aa12.17□□□□□ -0.46
USP3-206ENST00000558157 CEP85LQ5SZL2 805 aa12.17□□□□□ -0.46
USP3-206ENST00000558157 STOX1Q6ZVD7 989 aa12.17□□□□□ -0.46
USP3-206ENST00000558157 TAX1BP1Q86VP1 789 aa12.17□□□□□ -0.46
USP3-206ENST00000558157 MAGEB6Q8N7X4 407 aa12.17□□□□□ -0.46
USP3-206ENST00000558157 LRRC2Q9BYS8 371 aa12.17□□□□□ -0.46
USP3-206ENST00000558157 PUS7LQ9H0K6 701 aaKnown RBP12.17□□□□□ -0.46
USP3-206ENST00000558157 ACTR5Q9H9F9 607 aaPredicted RBP12.17□□□□□ -0.46
USP3-206ENST00000558157 ABCF2Q9UG63 623 aa12.17□□□□□ -0.46
USP3-206ENST00000558157 BRCA1P38398 1863 aaKnown RBP12.17□□□□□ -0.46
USP3-206ENST00000558157 GOLGA6L7A0A1B0GV03 622 aa12.17□□□□□ -0.46
USP3-206ENST00000558157 MYO1FO00160 1098 aa12.17□□□□□ -0.46
USP3-206ENST00000558157 RIMBP2O15034 1052 aa12.17□□□□□ -0.46
USP3-206ENST00000558157 SLC8A3P57103 927 aa12.17□□□□□ -0.46
USP3-206ENST00000558157 SARNPP82979 210 aaKnown RBP12.17□□□□□ -0.46
USP3-206ENST00000558157 KIF23Q02241 960 aaPredicted RBP12.17□□□□□ -0.46
USP3-206ENST00000558157 ICA1Q05084 483 aa12.17□□□□□ -0.46
USP3-206ENST00000558157 RBL2Q08999 1139 aa12.17□□□□□ -0.46
USP3-206ENST00000558157 TRIM14Q14142 442 aa12.17□□□□□ -0.46
USP3-206ENST00000558157 CCDC40Q4G0X9 1142 aa12.17□□□□□ -0.46
USP3-206ENST00000558157 SHC4Q6S5L8 630 aa12.17□□□□□ -0.46
USP3-206ENST00000558157 EHBP1Q8NDI1 1231 aa12.17□□□□□ -0.46
USP3-206ENST00000558157 C7orf43Q8WVR3 580 aa12.17□□□□□ -0.46
USP3-206ENST00000558157 NCOA5Q9HCD5 579 aaKnown RBP12.17□□□□□ -0.46
USP3-206ENST00000558157 LRP2BPQ9P2M1 347 aa12.17□□□□□ -0.46
USP3-206ENST00000558157 NEBLO76041 1014 aa12.16□□□□□ -0.46
USP3-206ENST00000558157 BMP6P22004 513 aa12.16□□□□□ -0.46
USP3-206ENST00000558157 SLC8A1P32418 973 aa12.16□□□□□ -0.46
USP3-206ENST00000558157 PTGER2P43116 358 aa12.16□□□□□ -0.46
USP3-206ENST00000558157 MDM2Q00987 491 aaPredicted RBP12.16□□□□□ -0.46
USP3-206ENST00000558157 PDE4BQ07343 736 aa12.16□□□□□ -0.46
USP3-206ENST00000558157 UBE3CQ15386 1083 aa12.16□□□□□ -0.46
USP3-206ENST00000558157 SKIDA1Q1XH10 827 aa12.16□□□□□ -0.46
USP3-206ENST00000558157 FILIP1LQ4L180 1135 aa12.16□□□□□ -0.46
USP3-206ENST00000558157 PAPD7Q5XG87 772 aaKnown RBP12.16□□□□□ -0.46
USP3-206ENST00000558157 CYP26C1Q6V0L0 522 aa12.16□□□□□ -0.46
USP3-206ENST00000558157 ZNF662Q6ZS27 426 aa12.16□□□□□ -0.46
USP3-206ENST00000558157 AENQ8WTP8 325 aaKnown RBP12.16□□□□□ -0.46
USP3-206ENST00000558157 RIN2Q8WYP3 895 aaPredicted RBP12.16□□□□□ -0.46
USP3-206ENST00000558157 CD209Q9NNX6 404 aa12.16□□□□□ -0.46
USP3-206ENST00000558157 LAMA4Q16363 1823 aa12.16□□□□□ -0.46
USP3-206ENST00000558157 CHD4Q14839 1912 aa12.16□□□□□ -0.46
USP3-206ENST00000558157 RTN2O75298 545 aa12.16□□□□□ -0.46
USP3-206ENST00000558157 SARSP49591 514 aaKnown RBP12.16□□□□□ -0.46
USP3-206ENST00000558157 PLCD1P51178 756 aa12.16□□□□□ -0.46
USP3-206ENST00000558157 IFFO1Q0D2I5 559 aa12.16□□□□□ -0.46
USP3-206ENST00000558157 MORC3Q14149 939 aa12.16□□□□□ -0.46
USP3-206ENST00000558157 CCDC88AQ3V6T2 1871 aa12.16□□□□□ -0.46
USP3-206ENST00000558157 NCAPH2Q6IBW4 605 aa12.16□□□□□ -0.46
USP3-206ENST00000558157 KANK3Q6NY19 840 aa12.16□□□□□ -0.46
USP3-206ENST00000558157 FOXP4Q8IVH2 680 aaPredicted RBP12.16□□□□□ -0.46
USP3-206ENST00000558157 TTLL6Q8N841 843 aa12.16□□□□□ -0.46
USP3-206ENST00000558157 RNF217Q8TC41 542 aa12.16□□□□□ -0.46
USP3-206ENST00000558157 ATP6V0A4Q9HBG4 840 aa12.16□□□□□ -0.46
USP3-206ENST00000558157 CD248Q9HCU0 757 aa12.16□□□□□ -0.46
USP3-206ENST00000558157 MAN1B1Q9UKM7 699 aa12.16□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms