RNA–Protein interactions for RNA: ENST00000557302.1

SHMT2-228, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 457 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-228ENST00000557302 USP6NLQ92738 828 aa15.85■□□□□ 0.13
SHMT2-228ENST00000557302 ARMC5Q96C12 935 aa15.85■□□□□ 0.13
SHMT2-228ENST00000557302 AGBL1Q96MI9 1066 aa15.85■□□□□ 0.13
SHMT2-228ENST00000557302 TCEANC2Q96MN5 208 aa15.85■□□□□ 0.13
SHMT2-228ENST00000557302 APBA2Q99767 749 aa15.85■□□□□ 0.13
SHMT2-228ENST00000557302 UBA5Q9GZZ9 404 aa15.85■□□□□ 0.13
SHMT2-228ENST00000557302 CPVLQ9H3G5 476 aa15.85■□□□□ 0.13
SHMT2-228ENST00000557302 RIPK3Q9Y572 518 aa15.85■□□□□ 0.13
SHMT2-228ENST00000557302 ZNF536O15090 1300 aa15.85■□□□□ 0.13
SHMT2-228ENST00000557302 DOCK3Q8IZD9 2030 aa15.85■□□□□ 0.13
SHMT2-228ENST00000557302 COL11A1P12107 1806 aaPredicted RBP15.84■□□□□ 0.13
SHMT2-228ENST00000557302 PALM3A6NDB9 673 aaPredicted RBP15.84■□□□□ 0.13
SHMT2-228ENST00000557302 CCDC85CA6NKD9 419 aa15.84■□□□□ 0.13
SHMT2-228ENST00000557302 DHX16O60231 1041 aaKnown RBP15.84■□□□□ 0.13
SHMT2-228ENST00000557302 XRCC5P13010 732 aaKnown RBP15.84■□□□□ 0.13
SHMT2-228ENST00000557302 ELNP15502 786 aa15.84■□□□□ 0.13
SHMT2-228ENST00000557302 CASTP20810 708 aaKnown RBP15.84■□□□□ 0.13
SHMT2-228ENST00000557302 ADORA2AP29274 412 aa15.84■□□□□ 0.13
SHMT2-228ENST00000557302 FGD1P98174 961 aa15.84■□□□□ 0.13
SHMT2-228ENST00000557302 KCTD2Q14681 263 aa15.84■□□□□ 0.13
SHMT2-228ENST00000557302 TKFCQ3LXA3 575 aa15.84■□□□□ 0.13
SHMT2-228ENST00000557302 SGMS1Q86VZ5 419 aa15.84■□□□□ 0.13
SHMT2-228ENST00000557302 STAG2Q8N3U4 1231 aa15.84■□□□□ 0.13
SHMT2-228ENST00000557302 CHST13Q8NET6 341 aa15.84■□□□□ 0.13
SHMT2-228ENST00000557302 MMP19Q99542 508 aa15.84■□□□□ 0.13
SHMT2-228ENST00000557302 BIN2Q9UBW5 565 aaPredicted RBP15.84■□□□□ 0.13
SHMT2-228ENST00000557302 FBXO40Q9UH90 709 aa15.84■□□□□ 0.13
SHMT2-228ENST00000557302 MAD2L2Q9UI95 211 aa15.84■□□□□ 0.13
SHMT2-228ENST00000557302 PNMA2Q9UL42 364 aa15.84■□□□□ 0.13
SHMT2-228ENST00000557302 CCPG1Q9ULG6 757 aa15.84■□□□□ 0.13
SHMT2-228ENST00000557302 SLC12A7Q9Y666 1083 aa15.84■□□□□ 0.13
SHMT2-228ENST00000557302 KLRF2D3W0D1 207 aa15.83■□□□□ 0.12
SHMT2-228ENST00000557302 ICAM1P05362 532 aa15.83■□□□□ 0.12
SHMT2-228ENST00000557302 HOXC6P09630 235 aa15.83■□□□□ 0.12
SHMT2-228ENST00000557302 ALAS1P13196 640 aa15.83■□□□□ 0.12
SHMT2-228ENST00000557302 CPA1P15085 419 aa15.83■□□□□ 0.12
SHMT2-228ENST00000557302 RGS19P49795 217 aa15.83■□□□□ 0.12
SHMT2-228ENST00000557302 C8orf34Q49A92 452 aa15.83■□□□□ 0.12
SHMT2-228ENST00000557302 SYNE3Q6ZMZ3 975 aa15.83■□□□□ 0.12
SHMT2-228ENST00000557302 DPP9Q86TI2 863 aa15.83■□□□□ 0.12
SHMT2-228ENST00000557302 TRMT44Q8IYL2 757 aaKnown RBP15.83■□□□□ 0.12
SHMT2-228ENST00000557302 ADGRF4Q8IZF3 695 aa15.83■□□□□ 0.12
SHMT2-228ENST00000557302 CTCFLQ8NI51 663 aaPredicted RBP15.83■□□□□ 0.12
SHMT2-228ENST00000557302 ZNF333Q96JL9 665 aa15.83■□□□□ 0.12
SHMT2-228ENST00000557302 MAP3K14Q99558 947 aa15.83■□□□□ 0.12
SHMT2-228ENST00000557302 MYL10Q9BUA6 226 aa15.83■□□□□ 0.12
SHMT2-228ENST00000557302 HOMER2Q9NSB8 354 aa15.83■□□□□ 0.12
SHMT2-228ENST00000557302 RNF146Q9NTX7 359 aa15.83■□□□□ 0.12
SHMT2-228ENST00000557302 SLC5A4Q9NY91 659 aa15.83■□□□□ 0.12
SHMT2-228ENST00000557302 CALM1P0DP23 149 aa15.82■□□□□ 0.12
SHMT2-228ENST00000557302 CALM2P0DP24 149 aa15.82■□□□□ 0.12
SHMT2-228ENST00000557302 CALM3P0DP25 149 aa15.82■□□□□ 0.12
SHMT2-228ENST00000557302 RPS6KB1P23443 525 aa15.82■□□□□ 0.12
SHMT2-228ENST00000557302 KIF5BP33176 963 aa15.82■□□□□ 0.12
SHMT2-228ENST00000557302 UBXN2AP68543 259 aa15.82■□□□□ 0.12
SHMT2-228ENST00000557302 CDC37Q16543 378 aaPredicted RBP15.82■□□□□ 0.12
SHMT2-228ENST00000557302 DHX30Q7L2E3 1194 aaKnown RBP eCLIP15.82■□□□□ 0.12
SHMT2-228ENST00000557302 TRERF1Q96PN7 1200 aa15.82■□□□□ 0.12
SHMT2-228ENST00000557302 ACAD9Q9H845 621 aa15.82■□□□□ 0.12
SHMT2-228ENST00000557302 JMJD4Q9H9V9 463 aa15.82■□□□□ 0.12
SHMT2-228ENST00000557302 VAT1LQ9HCJ6 419 aa15.82■□□□□ 0.12
SHMT2-228ENST00000557302 CENPFP49454 3210 aa15.82■□□□□ 0.12
SHMT2-228ENST00000557302 PLXNB2O15031 1838 aa15.81■□□□□ 0.12
SHMT2-228ENST00000557302 COBLO75128 1261 aa15.81■□□□□ 0.12
SHMT2-228ENST00000557302 SEC24BO95487 1268 aa15.81■□□□□ 0.12
SHMT2-228ENST00000557302 HMGCRP04035 888 aa15.81■□□□□ 0.12
SHMT2-228ENST00000557302 INHAP05111 366 aa15.81■□□□□ 0.12
SHMT2-228ENST00000557302 ANAPC15P60006 121 aa15.81■□□□□ 0.12
SHMT2-228ENST00000557302 Q6ZUG5 572 aa15.81■□□□□ 0.12
SHMT2-228ENST00000557302 RUFY3Q7L099 469 aa15.81■□□□□ 0.12
SHMT2-228ENST00000557302 ANKRD35Q8N283 1001 aa15.81■□□□□ 0.12
SHMT2-228ENST00000557302 TRIB2Q92519 343 aa15.81■□□□□ 0.12
SHMT2-228ENST00000557302 TM6SF1Q9BZW5 370 aa15.81■□□□□ 0.12
SHMT2-228ENST00000557302 ZSWIM6Q9HCJ5 1215 aa15.81■□□□□ 0.12
SHMT2-228ENST00000557302 CYP46A1Q9Y6A2 500 aa15.81■□□□□ 0.12
SHMT2-228ENST00000557302 ZNF236Q9UL36 1845 aa15.8■□□□□ 0.12
SHMT2-228ENST00000557302 MYCP01106 439 aaPredicted RBP15.8■□□□□ 0.12
SHMT2-228ENST00000557302 TAL1P17542 331 aaPredicted RBP15.8■□□□□ 0.12
SHMT2-228ENST00000557302 RXRAP19793 462 aa15.8■□□□□ 0.12
SHMT2-228ENST00000557302 GNAQP50148 359 aa15.8■□□□□ 0.12
SHMT2-228ENST00000557302 CCL14Q16627 93 aa15.8■□□□□ 0.12
SHMT2-228ENST00000557302 APOA5Q6Q788 366 aa15.8■□□□□ 0.12
SHMT2-228ENST00000557302 MICU3Q86XE3 530 aa15.8■□□□□ 0.12
SHMT2-228ENST00000557302 RAB11FIP4Q86YS3 637 aa15.8■□□□□ 0.12
SHMT2-228ENST00000557302 NPLOC4Q8TAT6 608 aa15.8■□□□□ 0.12
SHMT2-228ENST00000557302 DDX11Q96FC9 970 aa15.8■□□□□ 0.12
SHMT2-228ENST00000557302 LZTS2Q9BRK4 669 aa15.8■□□□□ 0.12
SHMT2-228ENST00000557302 KLF18A0A0U1RQI7 1052 aa15.79■□□□□ 0.12
SHMT2-228ENST00000557302 PGK2P07205 417 aa15.79■□□□□ 0.12
SHMT2-228ENST00000557302 QRICH1Q2TAL8 776 aa15.79■□□□□ 0.12
SHMT2-228ENST00000557302 USH1GQ495M9 461 aa15.79■□□□□ 0.12
SHMT2-228ENST00000557302 MFSD14CQ5VZR4 134 aa15.79■□□□□ 0.12
SHMT2-228ENST00000557302 CCDC144CPQ8IYA2 1237 aa15.79■□□□□ 0.12
SHMT2-228ENST00000557302 FBXL16Q8N461 479 aa15.79■□□□□ 0.12
SHMT2-228ENST00000557302 FANCBQ8NB91 859 aa15.79■□□□□ 0.12
SHMT2-228ENST00000557302 BRF1Q92994 677 aa15.79■□□□□ 0.12
SHMT2-228ENST00000557302 TMEM106CQ9BVX2 250 aa15.79■□□□□ 0.12
SHMT2-228ENST00000557302 UPF3BQ9BZI7 483 aaKnown RBP15.79■□□□□ 0.12
SHMT2-228ENST00000557302 RIOX1Q9H6W3 641 aa15.79■□□□□ 0.12
SHMT2-228ENST00000557302 BRPF3Q9ULD4 1205 aa15.79■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms