RNA–Protein interactions for RNA: ENST00000557024.1

SYNE2-224, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best)

Gene SYNE2, Length 998 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-224ENST00000557024 FAM126BQ8IXS8 530 aa11.26□□□□□ -0.61
SYNE2-224ENST00000557024 TRMT2AQ8IZ69 625 aaKnown RBP11.26□□□□□ -0.61
SYNE2-224ENST00000557024 CCDC8Q9H0W5 538 aaPredicted RBP11.26□□□□□ -0.61
SYNE2-224ENST00000557024 MTIF3Q9H2K0 278 aaKnown RBP11.26□□□□□ -0.61
SYNE2-224ENST00000557024 ARHGEF10LQ9HCE6 1279 aa11.26□□□□□ -0.61
SYNE2-224ENST00000557024 ADAMTS5Q9UNA0 930 aa11.26□□□□□ -0.61
SYNE2-224ENST00000557024 FAM86C2PA6NEL3 165 aa11.25□□□□□ -0.61
SYNE2-224ENST00000557024 VWA5AO00534 786 aa11.25□□□□□ -0.61
SYNE2-224ENST00000557024 ERC2O15083 957 aa11.25□□□□□ -0.61
SYNE2-224ENST00000557024 TLR3O15455 904 aaKnown RBP11.25□□□□□ -0.61
SYNE2-224ENST00000557024 CT47B1P0C2W7 299 aaPredicted RBP11.25□□□□□ -0.61
SYNE2-224ENST00000557024 AKR1B1P15121 316 aa11.25□□□□□ -0.61
SYNE2-224ENST00000557024 CST5P28325 142 aaPredicted RBP11.25□□□□□ -0.61
SYNE2-224ENST00000557024 GNASQ5JWF2 1037 aa11.25□□□□□ -0.61
SYNE2-224ENST00000557024 PCSK9Q8NBP7 692 aaKnown RBP11.25□□□□□ -0.61
SYNE2-224ENST00000557024 DYNLL2Q96FJ2 89 aa11.25□□□□□ -0.61
SYNE2-224ENST00000557024 CRNKL1Q9BZJ0 848 aaKnown RBP11.25□□□□□ -0.61
SYNE2-224ENST00000557024 SH2D4AQ9H788 454 aa11.25□□□□□ -0.61
SYNE2-224ENST00000557024 ZNF214Q9UL59 606 aaPredicted RBP11.25□□□□□ -0.61
SYNE2-224ENST00000557024 TNNQ9UQP3 1299 aa11.25□□□□□ -0.61
SYNE2-224ENST00000557024 UMODL1Q5DID0 1318 aa11.25□□□□□ -0.61
SYNE2-224ENST00000557024 PLXNA1Q9UIW2 1896 aa11.24□□□□□ -0.61
SYNE2-224ENST00000557024 RFXAPO00287 272 aa11.24□□□□□ -0.61
SYNE2-224ENST00000557024 RAD21O60216 631 aa11.24□□□□□ -0.61
SYNE2-224ENST00000557024 SURF6O75683 361 aaKnown RBP11.24□□□□□ -0.61
SYNE2-224ENST00000557024 RARSP54136 660 aaKnown RBP11.24□□□□□ -0.61
SYNE2-224ENST00000557024 CCL23P55773 120 aa11.24□□□□□ -0.61
SYNE2-224ENST00000557024 ACVR2BQ13705 512 aa11.24□□□□□ -0.61
SYNE2-224ENST00000557024 CCDC144BQ3MJ40 725 aa11.24□□□□□ -0.61
SYNE2-224ENST00000557024 MSL3Q8N5Y2 521 aaKnown RBP11.24□□□□□ -0.61
SYNE2-224ENST00000557024 SDR42E1Q8WUS8 393 aa11.24□□□□□ -0.61
SYNE2-224ENST00000557024 DDX11Q96FC9 970 aa11.24□□□□□ -0.61
SYNE2-224ENST00000557024 HIPK3Q9H422 1215 aa11.24□□□□□ -0.61
SYNE2-224ENST00000557024 SPC25Q9HBM1 224 aa11.24□□□□□ -0.61
SYNE2-224ENST00000557024 PPP1R9AQ9ULJ8 1098 aa11.24□□□□□ -0.61
SYNE2-224ENST00000557024 SLC4A7Q9Y6M7 1214 aa11.24□□□□□ -0.61
SYNE2-224ENST00000557024 MYH1P12882 1939 aa11.23□□□□□ -0.61
SYNE2-224ENST00000557024 ZBBXA8MT70 800 aa11.23□□□□□ -0.61
SYNE2-224ENST00000557024 BCAR3O75815 825 aa11.23□□□□□ -0.61
SYNE2-224ENST00000557024 CD4P01730 458 aa11.23□□□□□ -0.61
SYNE2-224ENST00000557024 EEF2P13639 858 aaKnown RBP11.23□□□□□ -0.61
SYNE2-224ENST00000557024 COPB2P35606 906 aa11.23□□□□□ -0.61
SYNE2-224ENST00000557024 SLC4A3P48751 1232 aa11.23□□□□□ -0.61
SYNE2-224ENST00000557024 GJA9P57773 515 aa11.23□□□□□ -0.61
SYNE2-224ENST00000557024 FAM83BQ5T0W9 1011 aa11.23□□□□□ -0.61
SYNE2-224ENST00000557024 KRT40Q6A162 431 aa11.23□□□□□ -0.61
SYNE2-224ENST00000557024 MAMDC4Q6UXC1 1216 aa11.23□□□□□ -0.61
SYNE2-224ENST00000557024 ALYREFQ86V81 257 aaKnown RBP11.23□□□□□ -0.61
SYNE2-224ENST00000557024 REPS2Q8NFH8 660 aa11.23□□□□□ -0.61
SYNE2-224ENST00000557024 ARHGAP45Q92619 1136 aa11.23□□□□□ -0.61
SYNE2-224ENST00000557024 KHSRPQ92945 711 aaKnown RBP eCLIP11.23□□□□□ -0.61
SYNE2-224ENST00000557024 EAF2Q96CJ1 260 aaPredicted RBP11.23□□□□□ -0.61
SYNE2-224ENST00000557024 UPF3AQ9H1J1 476 aaKnown RBP11.23□□□□□ -0.61
SYNE2-224ENST00000557024 DCP1AQ9NPI6 582 aaPredicted RBP11.23□□□□□ -0.61
SYNE2-224ENST00000557024 C11orf16Q9NQ32 467 aa11.23□□□□□ -0.61
SYNE2-224ENST00000557024 CDKN2AIPQ9NXV6 580 aaPredicted RBP11.23□□□□□ -0.61
SYNE2-224ENST00000557024 SWAP70Q9UH65 585 aa11.23□□□□□ -0.61
SYNE2-224ENST00000557024 RIPK3Q9Y572 518 aa11.23□□□□□ -0.61
SYNE2-224ENST00000557024 PCDHA11Q9Y5I1 949 aa11.23□□□□□ -0.61
SYNE2-224ENST00000557024 MTCH2Q9Y6C9 303 aa11.23□□□□□ -0.61
SYNE2-224ENST00000557024 PIEZO1Q92508 2521 aa11.23□□□□□ -0.61
SYNE2-224ENST00000557024 DNAJC25-GNG10A0A024R161 153 aa11.22□□□□□ -0.61
SYNE2-224ENST00000557024 SMCHD1A6NHR9 2005 aa11.22□□□□□ -0.61
SYNE2-224ENST00000557024 SMIM22K7EJ46 135 aa11.22□□□□□ -0.61
SYNE2-224ENST00000557024 TLL1O43897 1013 aa11.22□□□□□ -0.61
SYNE2-224ENST00000557024 TRIM27P14373 513 aa11.22□□□□□ -0.61
SYNE2-224ENST00000557024 PDE6AP16499 860 aa11.22□□□□□ -0.61
SYNE2-224ENST00000557024 ATP2A2P16615 1042 aaKnown RBP11.22□□□□□ -0.61
SYNE2-224ENST00000557024 BEX3Q00994 111 aa11.22□□□□□ -0.61
SYNE2-224ENST00000557024 SNRNP48Q6IEG0 339 aaKnown RBP11.22□□□□□ -0.61
SYNE2-224ENST00000557024 TMED8Q6PL24 325 aaPredicted RBP11.22□□□□□ -0.61
SYNE2-224ENST00000557024 CXCL17Q6UXB2 119 aa11.22□□□□□ -0.61
SYNE2-224ENST00000557024 PDCD7Q8N8D1 485 aaKnown RBP11.22□□□□□ -0.61
SYNE2-224ENST00000557024 CLUAP1Q96AJ1 413 aa11.22□□□□□ -0.61
SYNE2-224ENST00000557024 TEX13BQ9BXU2 312 aa11.22□□□□□ -0.61
SYNE2-224ENST00000557024 WNT8AQ9H1J5 351 aa11.22□□□□□ -0.61
SYNE2-224ENST00000557024 CERS4Q9HA82 394 aa11.22□□□□□ -0.61
SYNE2-224ENST00000557024 RCAN3Q9UKA8 241 aa11.22□□□□□ -0.61
SYNE2-224ENST00000557024 TRANK1O15050 2925 aa11.21□□□□□ -0.61
SYNE2-224ENST00000557024 CYP2D7A0A087X1C5 515 aa11.21□□□□□ -0.61
SYNE2-224ENST00000557024 EPOPA6NHQ4 379 aa11.21□□□□□ -0.61
SYNE2-224ENST00000557024 CTAGE5O15320 804 aa11.21□□□□□ -0.61
SYNE2-224ENST00000557024 GPR37L1O60883 481 aa11.21□□□□□ -0.61
SYNE2-224ENST00000557024 CA3P07451 260 aa11.21□□□□□ -0.61
SYNE2-224ENST00000557024 SLC9C2Q5TAH2 1124 aa11.21□□□□□ -0.61
SYNE2-224ENST00000557024 LCORLQ8N3X6 602 aa11.21□□□□□ -0.61
SYNE2-224ENST00000557024 SSH3Q8TE77 659 aa11.21□□□□□ -0.61
SYNE2-224ENST00000557024 NUP88Q99567 741 aaPredicted RBP11.21□□□□□ -0.61
SYNE2-224ENST00000557024 NOC4LQ9BVI4 516 aaKnown RBP11.21□□□□□ -0.61
SYNE2-224ENST00000557024 TRPV6Q9H1D0 765 aa11.21□□□□□ -0.61
SYNE2-224ENST00000557024 GOPCQ9HD26 462 aa11.21□□□□□ -0.61
SYNE2-224ENST00000557024 SCUBE2Q9NQ36 999 aa11.21□□□□□ -0.61
SYNE2-224ENST00000557024 MYO5AQ9Y4I1 1855 aaKnown RBP11.21□□□□□ -0.62
SYNE2-224ENST00000557024 ZNF532Q9HCE3 1301 aa11.2□□□□□ -0.62
SYNE2-224ENST00000557024 TCF20Q9UGU0 1960 aaKnown RBP11.2□□□□□ -0.62
SYNE2-224ENST00000557024 PRKAB2O43741 272 aa11.2□□□□□ -0.62
SYNE2-224ENST00000557024 POU3F3P20264 500 aaPredicted RBP11.2□□□□□ -0.62
SYNE2-224ENST00000557024 CDK8P49336 464 aa11.2□□□□□ -0.62
SYNE2-224ENST00000557024 TTLL4Q14679 1199 aa11.2□□□□□ -0.62
SYNE2-224ENST00000557024 TMEM67Q5HYA8 995 aa11.2□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms