RNA–Protein interactions for RNA: ENST00000555563.5

SHMT2-219, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 895 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-219ENST00000555563 CCDC174Q6PII3 467 aa16.09■□□□□ 0.17
SHMT2-219ENST00000555563 NCOA7Q8NI08 942 aa16.09■□□□□ 0.17
SHMT2-219ENST00000555563 AGBL1Q96MI9 1066 aa16.09■□□□□ 0.17
SHMT2-219ENST00000555563 RANBP17Q9H2T7 1088 aaKnown RBP16.09■□□□□ 0.17
SHMT2-219ENST00000555563 HOMER2Q9NSB8 354 aa16.09■□□□□ 0.17
SHMT2-219ENST00000555563 SLC5A4Q9NY91 659 aa16.09■□□□□ 0.17
SHMT2-219ENST00000555563 FRMPD3Q5JV73 1810 aa16.09■□□□□ 0.17
SHMT2-219ENST00000555563 ZNFX1Q9P2E3 1918 aaKnown RBP16.09■□□□□ 0.17
SHMT2-219ENST00000555563 SLC27A2O14975 620 aa16.08■□□□□ 0.16
SHMT2-219ENST00000555563 GOLGA8HP0CJ92 632 aa16.08■□□□□ 0.16
SHMT2-219ENST00000555563 TAL1P17542 331 aaPredicted RBP16.08■□□□□ 0.16
SHMT2-219ENST00000555563 IFIT1BQ5T764 474 aaKnown RBP16.08■□□□□ 0.16
SHMT2-219ENST00000555563 DHX30Q7L2E3 1194 aaKnown RBP eCLIP16.08■□□□□ 0.16
SHMT2-219ENST00000555563 MB21D2Q8IYB1 491 aaPredicted RBP16.08■□□□□ 0.16
SHMT2-219ENST00000555563 MAML3Q96JK9 1138 aa16.08■□□□□ 0.16
SHMT2-219ENST00000555563 CRISPLD2Q9H0B8 497 aa16.08■□□□□ 0.16
SHMT2-219ENST00000555563 RNF146Q9NTX7 359 aa16.08■□□□□ 0.16
SHMT2-219ENST00000555563 FBXO40Q9UH90 709 aa16.08■□□□□ 0.16
SHMT2-219ENST00000555563 ANTXR2P58335 489 aa16.07■□□□□ 0.16
SHMT2-219ENST00000555563 NECTIN1Q15223 517 aa16.07■□□□□ 0.16
SHMT2-219ENST00000555563 ZNF792Q3KQV3 632 aa16.07■□□□□ 0.16
SHMT2-219ENST00000555563 GPATCH4Q5T3I0 446 aaKnown RBP16.07■□□□□ 0.16
SHMT2-219ENST00000555563 CREB3L3Q68CJ9 461 aa16.07■□□□□ 0.16
SHMT2-219ENST00000555563 CHST3Q7LGC8 479 aa16.07■□□□□ 0.16
SHMT2-219ENST00000555563 CHST13Q8NET6 341 aa16.07■□□□□ 0.16
SHMT2-219ENST00000555563 ACAD9Q9H845 621 aa16.07■□□□□ 0.16
SHMT2-219ENST00000555563 CCPG1Q9ULG6 757 aa16.07■□□□□ 0.16
SHMT2-219ENST00000555563 DNAJC25-GNG10A0A024R161 153 aa16.06■□□□□ 0.16
SHMT2-219ENST00000555563 IFIT3O14879 490 aaKnown RBP16.06■□□□□ 0.16
SHMT2-219ENST00000555563 FARP2O94887 1054 aaPredicted RBP16.06■□□□□ 0.16
SHMT2-219ENST00000555563 ICAM1P05362 532 aa16.06■□□□□ 0.16
SHMT2-219ENST00000555563 ALAS1P13196 640 aa16.06■□□□□ 0.16
SHMT2-219ENST00000555563 CYBAP13498 195 aa16.06■□□□□ 0.16
SHMT2-219ENST00000555563 ASPRV1Q53RT3 343 aa16.06■□□□□ 0.16
SHMT2-219ENST00000555563 TRPV1Q8NER1 839 aa16.06■□□□□ 0.16
SHMT2-219ENST00000555563 DDX11Q96FC9 970 aa16.06■□□□□ 0.16
SHMT2-219ENST00000555563 CPVLQ9H3G5 476 aa16.06■□□□□ 0.16
SHMT2-219ENST00000555563 SENP2Q9HC62 589 aa16.06■□□□□ 0.16
SHMT2-219ENST00000555563 TFRCP02786 760 aaKnown RBP16.05■□□□□ 0.16
SHMT2-219ENST00000555563 COL9A3Q14050 684 aaPredicted RBP16.05■□□□□ 0.16
SHMT2-219ENST00000555563 TKFCQ3LXA3 575 aa16.05■□□□□ 0.16
SHMT2-219ENST00000555563 UBE2Q1Q7Z7E8 422 aa16.05■□□□□ 0.16
SHMT2-219ENST00000555563 ANKRD35Q8N283 1001 aa16.05■□□□□ 0.16
SHMT2-219ENST00000555563 TRERF1Q96PN7 1200 aa16.05■□□□□ 0.16
SHMT2-219ENST00000555563 A1CFQ9NQ94 594 aaKnown RBP16.05■□□□□ 0.16
SHMT2-219ENST00000555563 DIS3Q9Y2L1 958 aaKnown RBP16.05■□□□□ 0.16
SHMT2-219ENST00000555563 ERICH2A1L162 156 aa16.04■□□□□ 0.16
SHMT2-219ENST00000555563 PARP1P09874 1014 aaKnown RBP16.04■□□□□ 0.16
SHMT2-219ENST00000555563 WTAPQ15007 396 aa16.04■□□□□ 0.16
SHMT2-219ENST00000555563 SART3Q15020 963 aaKnown RBP16.04■□□□□ 0.16
SHMT2-219ENST00000555563 MUM1L1Q5H9M0 696 aa16.04■□□□□ 0.16
SHMT2-219ENST00000555563 TMEM67Q5HYA8 995 aa16.04■□□□□ 0.16
SHMT2-219ENST00000555563 FGD4Q96M96 766 aa16.04■□□□□ 0.16
SHMT2-219ENST00000555563 UBA5Q9GZZ9 404 aa16.04■□□□□ 0.16
SHMT2-219ENST00000555563 LCTP09848 1927 aa16.04■□□□□ 0.16
SHMT2-219ENST00000555563 WDR19Q8NEZ3 1342 aa16.03■□□□□ 0.16
SHMT2-219ENST00000555563 SMCHD1A6NHR9 2005 aa16.03■□□□□ 0.16
SHMT2-219ENST00000555563 PRC1O43663 620 aa16.03■□□□□ 0.16
SHMT2-219ENST00000555563 CNGA1P29973 690 aa16.03■□□□□ 0.16
SHMT2-219ENST00000555563 CDC37Q16543 378 aaPredicted RBP16.03■□□□□ 0.16
SHMT2-219ENST00000555563 PRAMEF19Q5SWL8 479 aa16.03■□□□□ 0.16
SHMT2-219ENST00000555563 RNF20Q5VTR2 975 aa16.03■□□□□ 0.16
SHMT2-219ENST00000555563 LHX8Q68G74 356 aa16.03■□□□□ 0.16
SHMT2-219ENST00000555563 IGDCC4Q8TDY8 1250 aa16.03■□□□□ 0.16
SHMT2-219ENST00000555563 DIS3LQ8TF46 1054 aaKnown RBP16.03■□□□□ 0.16
SHMT2-219ENST00000555563 TINF2Q9BSI4 451 aa16.03■□□□□ 0.16
SHMT2-219ENST00000555563 GPHNQ9NQX3 736 aaPredicted RBP16.03■□□□□ 0.16
SHMT2-219ENST00000555563 DDX20Q9UHI6 824 aaKnown RBP16.03■□□□□ 0.16
SHMT2-219ENST00000555563 OGDHLQ9ULD0 1010 aa16.03■□□□□ 0.16
SHMT2-219ENST00000555563 LRRC37A2A6NM11 1700 aa16.02■□□□□ 0.16
SHMT2-219ENST00000555563 PFASO15067 1338 aa16.02■□□□□ 0.16
SHMT2-219ENST00000555563 NFIBO00712 420 aa16.02■□□□□ 0.16
SHMT2-219ENST00000555563 CAPN2P17655 700 aa16.02■□□□□ 0.16
SHMT2-219ENST00000555563 ADGRF4Q8IZF3 695 aa16.02■□□□□ 0.16
SHMT2-219ENST00000555563 STAG2Q8N3U4 1231 aa16.02■□□□□ 0.16
SHMT2-219ENST00000555563 LY9Q9HBG7 655 aa16.02■□□□□ 0.16
SHMT2-219ENST00000555563 SYNGAP1Q96PV0 1343 aa16.01■□□□□ 0.15
SHMT2-219ENST00000555563 POTEB2H3BUK9 544 aa16.01■□□□□ 0.15
SHMT2-219ENST00000555563 SH2B2O14492 632 aaPredicted RBP16.01■□□□□ 0.15
SHMT2-219ENST00000555563 SEPT4O43236 478 aa16.01■□□□□ 0.15
SHMT2-219ENST00000555563 MSCO60682 206 aa16.01■□□□□ 0.15
SHMT2-219ENST00000555563 MCM5P33992 734 aa16.01■□□□□ 0.15
SHMT2-219ENST00000555563 MNX1P50219 401 aaPredicted RBP16.01■□□□□ 0.15
SHMT2-219ENST00000555563 CNTN2Q02246 1040 aa16.01■□□□□ 0.15
SHMT2-219ENST00000555563 GRM4Q14833 912 aa16.01■□□□□ 0.15
SHMT2-219ENST00000555563 NSMFQ6X4W1 530 aa16.01■□□□□ 0.15
SHMT2-219ENST00000555563 ZNF467Q7Z7K2 595 aaPredicted RBP16.01■□□□□ 0.15
SHMT2-219ENST00000555563 RASEFQ8IZ41 740 aa16.01■□□□□ 0.15
SHMT2-219ENST00000555563 MSL3Q8N5Y2 521 aaKnown RBP16.01■□□□□ 0.15
SHMT2-219ENST00000555563 FAM133AQ8N9E0 248 aa16.01■□□□□ 0.15
SHMT2-219ENST00000555563 ANKLE1Q8NAG6 615 aa16.01■□□□□ 0.15
SHMT2-219ENST00000555563 MTA3Q9BTC8 594 aa16.01■□□□□ 0.15
SHMT2-219ENST00000555563 CYP39A1Q9NYL5 469 aa16.01■□□□□ 0.15
SHMT2-219ENST00000555563 MAD2L2Q9UI95 211 aa16.01■□□□□ 0.15
SHMT2-219ENST00000555563 PNMA2Q9UL42 364 aa16.01■□□□□ 0.15
SHMT2-219ENST00000555563 MCM3APO60318 1980 aa16■□□□□ 0.15
SHMT2-219ENST00000555563 PALM3A6NDB9 673 aaPredicted RBP16■□□□□ 0.15
SHMT2-219ENST00000555563 KLRF2D3W0D1 207 aa16■□□□□ 0.15
SHMT2-219ENST00000555563 DHX16O60231 1041 aaKnown RBP16■□□□□ 0.15
SHMT2-219ENST00000555563 TROAPQ12815 778 aa16■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms