RNA–Protein interactions for RNA: ENST00000555259.5

SCFD1-215, Transcript of sec1 family domain containing 1, humanhuman

TSL 1 (best)

Gene SCFD1, Length 1,553 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-215ENST00000555259 TMEM67Q5HYA8 995 aa11.66□□□□□ -0.54
SCFD1-215ENST00000555259 FAM83BQ5T0W9 1011 aa11.66□□□□□ -0.54
SCFD1-215ENST00000555259 SNRNP48Q6IEG0 339 aaKnown RBP11.66□□□□□ -0.54
SCFD1-215ENST00000555259 CXCL17Q6UXB2 119 aa11.66□□□□□ -0.54
SCFD1-215ENST00000555259 SSH3Q8TE77 659 aa11.66□□□□□ -0.54
SCFD1-215ENST00000555259 HLA-CQ95604 372 aa11.66□□□□□ -0.54
SCFD1-215ENST00000555259 CCDC17Q96LX7 622 aa11.66□□□□□ -0.54
SCFD1-215ENST00000555259 FGD4Q96M96 766 aa11.66□□□□□ -0.54
SCFD1-215ENST00000555259 MYH8P13535 1937 aa11.65□□□□□ -0.54
SCFD1-215ENST00000555259 ITGA7Q13683 1181 aa11.65□□□□□ -0.54
SCFD1-215ENST00000555259 KATNBL1Q9H079 304 aa11.65□□□□□ -0.54
SCFD1-215ENST00000555259 TRPV6Q9H1D0 765 aa11.65□□□□□ -0.54
SCFD1-215ENST00000555259 GOPCQ9HD26 462 aa11.65□□□□□ -0.54
SCFD1-215ENST00000555259 CD320Q9NPF0 282 aa11.65□□□□□ -0.54
SCFD1-215ENST00000555259 MCM3APO60318 1980 aa11.65□□□□□ -0.54
SCFD1-215ENST00000555259 GRIN2DO15399 1336 aa11.65□□□□□ -0.55
SCFD1-215ENST00000555259 BRWD1Q9NSI6 2320 aa11.64□□□□□ -0.55
SCFD1-215ENST00000555259 SMIM22K7EJ46 135 aa11.64□□□□□ -0.55
SCFD1-215ENST00000555259 RAD21O60216 631 aa11.64□□□□□ -0.55
SCFD1-215ENST00000555259 B4GALT4O60513 344 aa11.64□□□□□ -0.55
SCFD1-215ENST00000555259 CABYRO75952 493 aa11.64□□□□□ -0.55
SCFD1-215ENST00000555259 TRIM27P14373 513 aa11.64□□□□□ -0.55
SCFD1-215ENST00000555259 PDE6AP16499 860 aa11.64□□□□□ -0.55
SCFD1-215ENST00000555259 TTLL4Q14679 1199 aa11.64□□□□□ -0.55
SCFD1-215ENST00000555259 SLC9C2Q5TAH2 1124 aa11.64□□□□□ -0.55
SCFD1-215ENST00000555259 ARMCX2Q7L311 632 aa11.64□□□□□ -0.55
SCFD1-215ENST00000555259 LCORLQ8N3X6 602 aa11.64□□□□□ -0.55
SCFD1-215ENST00000555259 SCLYQ96I15 445 aa11.64□□□□□ -0.55
SCFD1-215ENST00000555259 SLF1Q9BQI6 1058 aa11.64□□□□□ -0.55
SCFD1-215ENST00000555259 KANSL2Q9H9L4 492 aa11.64□□□□□ -0.55
SCFD1-215ENST00000555259 TNNQ9UQP3 1299 aa11.64□□□□□ -0.55
SCFD1-215ENST00000555259 ASTN1O14525 1302 aa11.64□□□□□ -0.55
SCFD1-215ENST00000555259 C11orf97A0A1B0GVM6 126 aaPredicted RBP11.63□□□□□ -0.55
SCFD1-215ENST00000555259 BCAR3O75815 825 aa11.63□□□□□ -0.55
SCFD1-215ENST00000555259 PFKMP08237 780 aa11.63□□□□□ -0.55
SCFD1-215ENST00000555259 CDK8P49336 464 aa11.63□□□□□ -0.55
SCFD1-215ENST00000555259 MRE11P49959 708 aa11.63□□□□□ -0.55
SCFD1-215ENST00000555259 ATP8B2P98198 1209 aa11.63□□□□□ -0.55
SCFD1-215ENST00000555259 DHX30Q7L2E3 1194 aaKnown RBP eCLIP11.63□□□□□ -0.55
SCFD1-215ENST00000555259 CCDC144CPQ8IYA2 1237 aa11.63□□□□□ -0.55
SCFD1-215ENST00000555259 ARNTL2Q8WYA1 636 aa11.63□□□□□ -0.55
SCFD1-215ENST00000555259 SNX27Q96L92 541 aa11.63□□□□□ -0.55
SCFD1-215ENST00000555259 AGBL1Q96MI9 1066 aa11.63□□□□□ -0.55
SCFD1-215ENST00000555259 NUP88Q99567 741 aaPredicted RBP11.63□□□□□ -0.55
SCFD1-215ENST00000555259 SEZ6LQ9BYH1 1024 aa11.63□□□□□ -0.55
SCFD1-215ENST00000555259 NOP58Q9Y2X3 529 aaKnown RBP11.63□□□□□ -0.55
SCFD1-215ENST00000555259 ZNF532Q9HCE3 1301 aa11.63□□□□□ -0.55
SCFD1-215ENST00000555259 PRR33A8MZF0 331 aa11.62□□□□□ -0.55
SCFD1-215ENST00000555259 ATP2A1O14983 1001 aa11.62□□□□□ -0.55
SCFD1-215ENST00000555259 ARHGEF15O94989 841 aa11.62□□□□□ -0.55
SCFD1-215ENST00000555259 SLC4A3P48751 1232 aa11.62□□□□□ -0.55
SCFD1-215ENST00000555259 TNFAIP2Q03169 654 aa11.62□□□□□ -0.55
SCFD1-215ENST00000555259 TAP1Q03518 808 aa11.62□□□□□ -0.55
SCFD1-215ENST00000555259 FSCN1Q16658 493 aaKnown RBP11.62□□□□□ -0.55
SCFD1-215ENST00000555259 NOL8Q76FK4 1167 aaKnown RBP11.62□□□□□ -0.55
SCFD1-215ENST00000555259 TLK2Q86UE8 772 aa11.62□□□□□ -0.55
SCFD1-215ENST00000555259 CPXCR1Q8N123 301 aa11.62□□□□□ -0.55
SCFD1-215ENST00000555259 ANKRD35Q8N283 1001 aa11.62□□□□□ -0.55
SCFD1-215ENST00000555259 GNEQ9Y223 722 aaKnown RBP11.62□□□□□ -0.55
SCFD1-215ENST00000555259 CYP2D7A0A087X1C5 515 aa11.62□□□□□ -0.55
SCFD1-215ENST00000555259 TCRBV5S4A2TA0A5A2 114 aa11.62□□□□□ -0.55
SCFD1-215ENST00000555259 GRB10Q13322 594 aa11.62□□□□□ -0.55
SCFD1-215ENST00000555259 TTF1Q15361 905 aaPredicted RBP11.62□□□□□ -0.55
SCFD1-215ENST00000555259 C12orf60Q5U649 245 aa11.62□□□□□ -0.55
SCFD1-215ENST00000555259 C16orf86Q6ZW13 317 aa11.62□□□□□ -0.55
SCFD1-215ENST00000555259 CLUAP1Q96AJ1 413 aa11.62□□□□□ -0.55
SCFD1-215ENST00000555259 ARMT1Q9H993 441 aa11.62□□□□□ -0.55
SCFD1-215ENST00000555259 USP34Q70CQ2 3546 aa11.61□□□□□ -0.55
SCFD1-215ENST00000555259 IPO8O15397 1037 aaKnown RBP11.61□□□□□ -0.55
SCFD1-215ENST00000555259 PRKAB2O43741 272 aa11.61□□□□□ -0.55
SCFD1-215ENST00000555259 PTGS1P23219 599 aa11.61□□□□□ -0.55
SCFD1-215ENST00000555259 PSMC6P62333 389 aa11.61□□□□□ -0.55
SCFD1-215ENST00000555259 DEFB128Q7Z7B8 93 aa11.61□□□□□ -0.55
SCFD1-215ENST00000555259 PRPF38AQ8NAV1 312 aaKnown RBP11.61□□□□□ -0.55
SCFD1-215ENST00000555259 SLC9A7Q96T83 725 aa11.61□□□□□ -0.55
SCFD1-215ENST00000555259 GNL3Q9BVP2 549 aaKnown RBP eCLIP11.61□□□□□ -0.55
SCFD1-215ENST00000555259 RAVER2Q9HCJ3 691 aaKnown RBP11.61□□□□□ -0.55
SCFD1-215ENST00000555259 ATP8A2Q9NTI2 1148 aa11.61□□□□□ -0.55
SCFD1-215ENST00000555259 FBXO40Q9UH90 709 aa11.61□□□□□ -0.55
SCFD1-215ENST00000555259 USP17L12C9JPN9 530 aa11.6□□□□□ -0.55
SCFD1-215ENST00000555259 USP17L21D6R901 530 aa11.6□□□□□ -0.55
SCFD1-215ENST00000555259 ZEB2O60315 1214 aa11.6□□□□□ -0.55
SCFD1-215ENST00000555259 LPXNO60711 386 aa11.6□□□□□ -0.55
SCFD1-215ENST00000555259 CNTN2Q02246 1040 aa11.6□□□□□ -0.55
SCFD1-215ENST00000555259 AACSQ86V21 672 aa11.6□□□□□ -0.55
SCFD1-215ENST00000555259 CHST13Q8NET6 341 aa11.6□□□□□ -0.55
SCFD1-215ENST00000555259 PHOSPHO2Q8TCD6 241 aa11.6□□□□□ -0.55
SCFD1-215ENST00000555259 AP5M1Q9H0R1 490 aa11.6□□□□□ -0.55
SCFD1-215ENST00000555259 ALDH8A1Q9H2A2 487 aaPredicted RBP11.6□□□□□ -0.55
SCFD1-215ENST00000555259 C1orf115Q9H7X2 142 aa11.6□□□□□ -0.55
SCFD1-215ENST00000555259 SLC38A10Q9HBR0 1119 aa11.6□□□□□ -0.55
SCFD1-215ENST00000555259 BAZ2AQ9UIF9 1905 aaKnown RBP11.6□□□□□ -0.55
SCFD1-215ENST00000555259 F5H6K3 240 aa11.59□□□□□ -0.55
SCFD1-215ENST00000555259 DYNC1LI2O43237 492 aaPredicted RBP11.59□□□□□ -0.55
SCFD1-215ENST00000555259 ZBED4O75132 1171 aa11.59□□□□□ -0.55
SCFD1-215ENST00000555259 MBD4O95243 580 aa11.59□□□□□ -0.55
SCFD1-215ENST00000555259 NDUFB10O96000 172 aa11.59□□□□□ -0.55
SCFD1-215ENST00000555259 CYP2C9P11712 490 aa11.59□□□□□ -0.55
SCFD1-215ENST00000555259 ACTN1P12814 892 aa11.59□□□□□ -0.55
SCFD1-215ENST00000555259 SMPD1P17405 629 aa11.59□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms