RNA–Protein interactions for RNA: ENST00000554079.1

SIX4-202, Transcript of SIX homeobox 4, humanhuman

TSL 1 (best)

Gene SIX4, Length 2,003 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SIX4-202ENST00000554079 SHC4Q6S5L8 630 aa10.6□□□□□ -0.71
SIX4-202ENST00000554079 TRIM7Q9C029 511 aa10.6□□□□□ -0.71
SIX4-202ENST00000554079 TMBIM4Q9HC24 238 aa10.6□□□□□ -0.71
SIX4-202ENST00000554079 ATXN10Q9UBB4 475 aa10.6□□□□□ -0.71
SIX4-202ENST00000554079 LRRC37A3O60309 1634 aa10.59□□□□□ -0.71
SIX4-202ENST00000554079 COL15A1P39059 1388 aa10.59□□□□□ -0.71
SIX4-202ENST00000554079 UBTFL1P0CB47 393 aaPredicted RBP10.59□□□□□ -0.71
SIX4-202ENST00000554079 FDPSP14324 419 aaKnown RBP10.59□□□□□ -0.71
SIX4-202ENST00000554079 NQO1P15559 274 aaKnown RBP10.59□□□□□ -0.71
SIX4-202ENST00000554079 HERVK_113P62684 666 aa10.59□□□□□ -0.71
SIX4-202ENST00000554079 PAK2Q13177 524 aa10.59□□□□□ -0.71
SIX4-202ENST00000554079 MPP3Q13368 585 aa10.59□□□□□ -0.71
SIX4-202ENST00000554079 KIAA0753Q2KHM9 967 aa10.59□□□□□ -0.71
SIX4-202ENST00000554079 SLC9C2Q5TAH2 1124 aa10.59□□□□□ -0.71
SIX4-202ENST00000554079 GKAP1Q5VSY0 366 aaPredicted RBP10.59□□□□□ -0.71
SIX4-202ENST00000554079 ZNF662Q6ZS27 426 aa10.59□□□□□ -0.71
SIX4-202ENST00000554079 DDX46Q7L014 1031 aaKnown RBP10.59□□□□□ -0.71
SIX4-202ENST00000554079 TBC1D1Q86TI0 1168 aaPredicted RBP10.59□□□□□ -0.71
SIX4-202ENST00000554079 ZNF589Q86UQ0 364 aaPredicted RBP10.59□□□□□ -0.71
SIX4-202ENST00000554079 RAPGEF5Q92565 580 aa10.59□□□□□ -0.71
SIX4-202ENST00000554079 KIFAP3Q92845 792 aa10.59□□□□□ -0.71
SIX4-202ENST00000554079 STIM2Q9P246 746 aa10.59□□□□□ -0.71
SIX4-202ENST00000554079 CEP131Q9UPN4 1083 aa10.59□□□□□ -0.71
SIX4-202ENST00000554079 RGPD1P0DJD0 1748 aa10.59□□□□□ -0.71
SIX4-202ENST00000554079 RNF225M0QZC1 329 aaPredicted RBP10.58□□□□□ -0.72
SIX4-202ENST00000554079 FOXN1O15353 648 aa10.58□□□□□ -0.72
SIX4-202ENST00000554079 SP100P23497 879 aaPredicted RBP10.58□□□□□ -0.72
SIX4-202ENST00000554079 PAX3P23760 479 aa10.58□□□□□ -0.72
SIX4-202ENST00000554079 ALDH5A1P51649 535 aaPredicted RBP10.58□□□□□ -0.72
SIX4-202ENST00000554079 SLC7A5Q01650 507 aa10.58□□□□□ -0.72
SIX4-202ENST00000554079 PABPC4Q13310 644 aaKnown RBP eCLIP10.58□□□□□ -0.72
SIX4-202ENST00000554079 CDC37Q16543 378 aaPredicted RBP10.58□□□□□ -0.72
SIX4-202ENST00000554079 HDGFL1Q5TGJ6 251 aa10.58□□□□□ -0.72
SIX4-202ENST00000554079 RESP18Q5W5W9 173 aa10.58□□□□□ -0.72
SIX4-202ENST00000554079 LCA5Q86VQ0 697 aa10.58□□□□□ -0.72
SIX4-202ENST00000554079 CREG2Q8IUH2 290 aa10.58□□□□□ -0.72
SIX4-202ENST00000554079 ELOA2Q8IYF1 753 aaPredicted RBP10.58□□□□□ -0.72
SIX4-202ENST00000554079 SMCR8Q8TEV9 937 aaPredicted RBP10.58□□□□□ -0.72
SIX4-202ENST00000554079 LRRC2Q9BYS8 371 aa10.58□□□□□ -0.72
SIX4-202ENST00000554079 AATFQ9NY61 560 aaKnown RBP eCLIP10.58□□□□□ -0.72
SIX4-202ENST00000554079 SIGLEC1Q9BZZ2 1709 aa10.58□□□□□ -0.72
SIX4-202ENST00000554079 PARP4Q9UKK3 1724 aaKnown RBP10.58□□□□□ -0.72
SIX4-202ENST00000554079 BACH1O14867 736 aa10.58□□□□□ -0.72
SIX4-202ENST00000554079 TAF5LO75529 589 aa10.58□□□□□ -0.72
SIX4-202ENST00000554079 NDUFA10O95299 355 aa10.58□□□□□ -0.72
SIX4-202ENST00000554079 FAM153BP0C7A2 387 aa10.58□□□□□ -0.72
SIX4-202ENST00000554079 ATP2A2P16615 1042 aaKnown RBP10.58□□□□□ -0.72
SIX4-202ENST00000554079 POLD1P28340 1107 aa10.58□□□□□ -0.72
SIX4-202ENST00000554079 FLIIQ13045 1269 aa10.58□□□□□ -0.72
SIX4-202ENST00000554079 MORC3Q14149 939 aa10.58□□□□□ -0.72
SIX4-202ENST00000554079 SLC39A14Q15043 492 aa10.58□□□□□ -0.72
SIX4-202ENST00000554079 FAM153CQ494X1 144 aa10.58□□□□□ -0.72
SIX4-202ENST00000554079 Q4G0T1 1027 aa10.58□□□□□ -0.72
SIX4-202ENST00000554079 NT5DC1Q5TFE4 455 aa10.58□□□□□ -0.72
SIX4-202ENST00000554079 PROCA1Q8NCQ7 364 aaPredicted RBP10.58□□□□□ -0.72
SIX4-202ENST00000554079 PRCCQ92733 491 aaPredicted RBP10.58□□□□□ -0.72
SIX4-202ENST00000554079 SLC35B4Q969S0 331 aa10.58□□□□□ -0.72
SIX4-202ENST00000554079 RBM33Q96EV2 1170 aaKnown RBP10.58□□□□□ -0.72
SIX4-202ENST00000554079 TRAPPC9Q96Q05 1148 aa10.58□□□□□ -0.72
SIX4-202ENST00000554079 NCOA5Q9HCD5 579 aaKnown RBP10.58□□□□□ -0.72
SIX4-202ENST00000554079 PREBQ9HCU5 417 aa10.58□□□□□ -0.72
SIX4-202ENST00000554079 FAM153AQ9UHL3 310 aa10.58□□□□□ -0.72
SIX4-202ENST00000554079 PTPRMP28827 1452 aa10.57□□□□□ -0.72
SIX4-202ENST00000554079 AFF2P51816 1311 aa10.57□□□□□ -0.72
SIX4-202ENST00000554079 KIF28PB7ZC32 967 aa10.57□□□□□ -0.72
SIX4-202ENST00000554079 ORC4O43929 436 aa10.57□□□□□ -0.72
SIX4-202ENST00000554079 POLR3DP05423 398 aaPredicted RBP10.57□□□□□ -0.72
SIX4-202ENST00000554079 HPDP32754 393 aaPredicted RBP10.57□□□□□ -0.72
SIX4-202ENST00000554079 SARSP49591 514 aaKnown RBP10.57□□□□□ -0.72
SIX4-202ENST00000554079 PLCD1P51178 756 aa10.57□□□□□ -0.72
SIX4-202ENST00000554079 KCNJ2P63252 427 aa10.57□□□□□ -0.72
SIX4-202ENST00000554079 MRPS25P82663 173 aaKnown RBP10.57□□□□□ -0.72
SIX4-202ENST00000554079 SEPT2Q15019 361 aa10.57□□□□□ -0.72
SIX4-202ENST00000554079 CDKAL1Q5VV42 579 aa10.57□□□□□ -0.72
SIX4-202ENST00000554079 FOXB2Q5VYV0 432 aa10.57□□□□□ -0.72
SIX4-202ENST00000554079 FNBP4Q8N3X1 1017 aaPredicted RBP10.57□□□□□ -0.72
SIX4-202ENST00000554079 C17orf50Q8WW18 174 aa10.57□□□□□ -0.72
SIX4-202ENST00000554079 AGXT2Q9BYV1 514 aa10.57□□□□□ -0.72
SIX4-202ENST00000554079 SDAD1Q9NVU7 687 aaKnown RBP eCLIP10.57□□□□□ -0.72
SIX4-202ENST00000554079 GALNT8Q9NY28 637 aa10.57□□□□□ -0.72
SIX4-202ENST00000554079 DACH1Q9UI36 760 aa10.57□□□□□ -0.72
SIX4-202ENST00000554079 AGAP1Q9UPQ3 857 aa10.57□□□□□ -0.72
SIX4-202ENST00000554079 LRRC42Q9Y546 428 aa10.57□□□□□ -0.72
SIX4-202ENST00000554079 GMEB1Q9Y692 573 aa10.57□□□□□ -0.72
SIX4-202ENST00000554079 EMILIN1Q9Y6C2 1016 aa10.57□□□□□ -0.72
SIX4-202ENST00000554079 EPN1Q9Y6I3 576 aaPredicted RBP10.57□□□□□ -0.72
SIX4-202ENST00000554079 BCL9LQ86UU0 1499 aa10.57□□□□□ -0.72
SIX4-202ENST00000554079 MAP3K15Q6ZN16 1313 aa10.57□□□□□ -0.72
SIX4-202ENST00000554079 TMEM221A6NGB7 291 aa10.57□□□□□ -0.72
SIX4-202ENST00000554079 SMAPO00193 183 aa10.57□□□□□ -0.72
SIX4-202ENST00000554079 TMOD1P28289 359 aa10.57□□□□□ -0.72
SIX4-202ENST00000554079 MARCKSP29966 332 aaPredicted RBP10.57□□□□□ -0.72
SIX4-202ENST00000554079 STAT6P42226 847 aa10.57□□□□□ -0.72
SIX4-202ENST00000554079 NCALDP61601 193 aa10.57□□□□□ -0.72
SIX4-202ENST00000554079 PPARAQ07869 468 aa10.57□□□□□ -0.72
SIX4-202ENST00000554079 MFSD4BQ5TF39 518 aa10.57□□□□□ -0.72
SIX4-202ENST00000554079 OTUD7BQ6GQQ9 843 aa10.57□□□□□ -0.72
SIX4-202ENST00000554079 OR52E8Q6IFG1 317 aa10.57□□□□□ -0.72
SIX4-202ENST00000554079 MCM10Q7L590 875 aa10.57□□□□□ -0.72
SIX4-202ENST00000554079 SPATA4Q8NEY3 305 aa10.57□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 15 ms