RNA–Protein interactions for RNA: ENST00000551623.1

PTCH1-223, Transcript of patched 1, human

TSL 1 (best)

Gene PTCH1, Length 366 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTCH1-223	ENST00000551623	GLI3	P10071	1580 aa		3.75	□□□□□ -1.81
PTCH1-223	ENST00000551623	NINL	Q9Y2I6	1382 aa		3.75	□□□□□ -1.81
PTCH1-223	ENST00000551623	PTPN23	Q9H3S7	1636 aa		3.74	□□□□□ -1.81
PTCH1-223	ENST00000551623		K7ESM1	405 aa		3.74	□□□□□ -1.81
PTCH1-223	ENST00000551623	N4BP3	O15049	544 aa		3.74	□□□□□ -1.81
PTCH1-223	ENST00000551623	PRICKLE3	O43900	615 aa	Predicted RBP	3.74	□□□□□ -1.81
PTCH1-223	ENST00000551623	CEP152	O94986	1710 aa		3.74	□□□□□ -1.81
PTCH1-223	ENST00000551623	XRCC5	P13010	732 aa	Known RBP	3.74	□□□□□ -1.81
PTCH1-223	ENST00000551623	ATF3	P18847	181 aa		3.74	□□□□□ -1.81
PTCH1-223	ENST00000551623	SSFA2	P28290	1259 aa		3.74	□□□□□ -1.81
PTCH1-223	ENST00000551623	RANGAP1	P46060	587 aa	Predicted RBP	3.74	□□□□□ -1.81
PTCH1-223	ENST00000551623	EGR3	Q06889	387 aa		3.74	□□□□□ -1.81
PTCH1-223	ENST00000551623	NKG7	Q16617	165 aa		3.74	□□□□□ -1.81
PTCH1-223	ENST00000551623	ZNF827	Q17R98	1081 aa		3.74	□□□□□ -1.81
PTCH1-223	ENST00000551623	GRIN3A	Q8TCU5	1115 aa		3.74	□□□□□ -1.81
PTCH1-223	ENST00000551623	PPP1R13L	Q8WUF5	828 aa		3.74	□□□□□ -1.81
PTCH1-223	ENST00000551623	DHX38	Q92620	1227 aa	Known RBP	3.74	□□□□□ -1.81
PTCH1-223	ENST00000551623	ELMO3	Q96BJ8	720 aa		3.74	□□□□□ -1.81
PTCH1-223	ENST00000551623	SHISA4	Q96DD7	197 aa		3.74	□□□□□ -1.81
PTCH1-223	ENST00000551623	SORCS2	Q96PQ0	1159 aa		3.74	□□□□□ -1.81
PTCH1-223	ENST00000551623	SIRT5	Q9NXA8	310 aa		3.74	□□□□□ -1.81
PTCH1-223	ENST00000551623	DUSP13	Q9UII6	198 aa		3.74	□□□□□ -1.81
PTCH1-223	ENST00000551623	PCDHA4	Q9UN74	947 aa		3.74	□□□□□ -1.81
PTCH1-223	ENST00000551623	PARD3	Q8TEW0	1356 aa		3.74	□□□□□ -1.81
PTCH1-223	ENST00000551623	PTPRU	Q92729	1446 aa		3.73	□□□□□ -1.81
PTCH1-223	ENST00000551623	PRAMEF27	A3QJZ7	478 aa		3.73	□□□□□ -1.81
PTCH1-223	ENST00000551623	HRK	O00198	91 aa		3.73	□□□□□ -1.81
PTCH1-223	ENST00000551623	IRS4	O14654	1257 aa	Predicted RBP	3.73	□□□□□ -1.81
PTCH1-223	ENST00000551623	MATN3	O15232	486 aa		3.73	□□□□□ -1.81
PTCH1-223	ENST00000551623	GRIN3B	O60391	1043 aa		3.73	□□□□□ -1.81
PTCH1-223	ENST00000551623	GALK1	P51570	392 aa		3.73	□□□□□ -1.81
PTCH1-223	ENST00000551623	CHRNE	Q04844	493 aa		3.73	□□□□□ -1.81
PTCH1-223	ENST00000551623	CNKSR3	Q6P9H4	555 aa		3.73	□□□□□ -1.81
PTCH1-223	ENST00000551623	DEFB132	Q7Z7B7	95 aa		3.73	□□□□□ -1.81
PTCH1-223	ENST00000551623	SPPL2C	Q8IUH8	684 aa		3.73	□□□□□ -1.81
PTCH1-223	ENST00000551623	TMEFF1	Q8IYR6	380 aa		3.73	□□□□□ -1.81
PTCH1-223	ENST00000551623	CCDC82	Q8N4S0	544 aa		3.73	□□□□□ -1.81
PTCH1-223	ENST00000551623	LINC01356	Q8N9X3	169 aa		3.73	□□□□□ -1.81
PTCH1-223	ENST00000551623	MENT	Q9BUN1	341 aa		3.73	□□□□□ -1.81
PTCH1-223	ENST00000551623	DUSP15	Q9H1R2	295 aa	Predicted RBP	3.73	□□□□□ -1.81
PTCH1-223	ENST00000551623	TRIT1	Q9H3H1	467 aa	Known RBP	3.73	□□□□□ -1.81
PTCH1-223	ENST00000551623	CNTD2	Q9H8S5	307 aa		3.73	□□□□□ -1.81
PTCH1-223	ENST00000551623	BRPF3	Q9ULD4	1205 aa		3.73	□□□□□ -1.81
PTCH1-223	ENST00000551623	MTMR7	Q9Y216	660 aa		3.73	□□□□□ -1.81
PTCH1-223	ENST00000551623	TMEM131L	A2VDJ0	1609 aa		3.73	□□□□□ -1.81
PTCH1-223	ENST00000551623	RIMS2	Q9UQ26	1411 aa		3.72	□□□□□ -1.81
PTCH1-223	ENST00000551623	EIF1AY	O14602	144 aa	Known RBP	3.72	□□□□□ -1.81
PTCH1-223	ENST00000551623	FSHB	P01225	129 aa		3.72	□□□□□ -1.81
PTCH1-223	ENST00000551623	BMP6	P22004	513 aa		3.72	□□□□□ -1.81
PTCH1-223	ENST00000551623	HMGA2	P52926	109 aa		3.72	□□□□□ -1.81
PTCH1-223	ENST00000551623	C1QTNF8	P60827	252 aa		3.72	□□□□□ -1.81
PTCH1-223	ENST00000551623	ZNF211	Q13398	564 aa	Predicted RBP	3.72	□□□□□ -1.81
PTCH1-223	ENST00000551623	ADGRF1	Q5T601	910 aa		3.72	□□□□□ -1.81
PTCH1-223	ENST00000551623	PRAMEF13	Q5VWM6	474 aa		3.72	□□□□□ -1.81
PTCH1-223	ENST00000551623	CDH24	Q86UP0	819 aa		3.72	□□□□□ -1.81
PTCH1-223	ENST00000551623	FAM129C	Q86XR2	697 aa		3.72	□□□□□ -1.81
PTCH1-223	ENST00000551623	EPS8L3	Q8TE67	593 aa	Known RBP	3.72	□□□□□ -1.81
PTCH1-223	ENST00000551623	XAGE3	Q8WTP9	111 aa		3.72	□□□□□ -1.81
PTCH1-223	ENST00000551623	SYTL4	Q96C24	671 aa	Predicted RBP	3.72	□□□□□ -1.81
PTCH1-223	ENST00000551623	WNT10A	Q9GZT5	417 aa		3.72	□□□□□ -1.81
PTCH1-223	ENST00000551623	ANO2	Q9NQ90	1003 aa		3.72	□□□□□ -1.81
PTCH1-223	ENST00000551623	PPP4R2	Q9NY27	417 aa		3.72	□□□□□ -1.81
PTCH1-223	ENST00000551623	C1orf167	Q5SNV9	1468 aa		3.72	□□□□□ -1.81
PTCH1-223	ENST00000551623	CEP350	Q5VT06	3117 aa		3.72	□□□□□ -1.81
PTCH1-223	ENST00000551623	NEXMIF	Q5QGS0	1516 aa		3.71	□□□□□ -1.82
PTCH1-223	ENST00000551623	PPP1R15A	O75807	674 aa	Predicted RBP	3.71	□□□□□ -1.82
PTCH1-223	ENST00000551623	ABL1	P00519	1130 aa		3.71	□□□□□ -1.82
PTCH1-223	ENST00000551623	TSPY4	P0CV99	314 aa		3.71	□□□□□ -1.82
PTCH1-223	ENST00000551623	TSPY10	P0CW01	314 aa		3.71	□□□□□ -1.82
PTCH1-223	ENST00000551623	MAGEA10	P43363	369 aa	Predicted RBP	3.71	□□□□□ -1.82
PTCH1-223	ENST00000551623	PDE3B	Q13370	1112 aa		3.71	□□□□□ -1.82
PTCH1-223	ENST00000551623	ZFYVE27	Q5T4F4	411 aa		3.71	□□□□□ -1.82
PTCH1-223	ENST00000551623	ANKS4B	Q8N8V4	417 aa		3.71	□□□□□ -1.82
PTCH1-223	ENST00000551623	ABCF1	Q8NE71	845 aa	Known RBP eCLIP	3.71	□□□□□ -1.82
PTCH1-223	ENST00000551623		Q96M66	194 aa		3.71	□□□□□ -1.82
PTCH1-223	ENST00000551623	NECAB3	Q96P71	396 aa	Predicted RBP	3.71	□□□□□ -1.82
PTCH1-223	ENST00000551623	FAM129B	Q96TA1	746 aa		3.71	□□□□□ -1.82
PTCH1-223	ENST00000551623	AKAP2	Q9Y2D5	859 aa		3.71	□□□□□ -1.82
PTCH1-223	ENST00000551623	PXDN	Q92626	1479 aa		3.71	□□□□□ -1.82
PTCH1-223	ENST00000551623	NRXN3	Q9Y4C0	1643 aa		3.7	□□□□□ -1.82
PTCH1-223	ENST00000551623	MARF1	Q9Y4F3	1742 aa	Known RBP	3.7	□□□□□ -1.82
PTCH1-223	ENST00000551623	CST3	P01034	146 aa	Predicted RBP	3.7	□□□□□ -1.82
PTCH1-223	ENST00000551623	VIPR1	P32241	457 aa		3.7	□□□□□ -1.82
PTCH1-223	ENST00000551623	ADAM17	P78536	824 aa		3.7	□□□□□ -1.82
PTCH1-223	ENST00000551623	DUSP4	Q13115	394 aa		3.7	□□□□□ -1.82
PTCH1-223	ENST00000551623	INPP5A	Q14642	412 aa		3.7	□□□□□ -1.82
PTCH1-223	ENST00000551623	SCARA3	Q6AZY7	606 aa		3.7	□□□□□ -1.82
PTCH1-223	ENST00000551623	LLGL2	Q6P1M3	1020 aa		3.7	□□□□□ -1.82
PTCH1-223	ENST00000551623	LRFN4	Q6PJG9	635 aa		3.7	□□□□□ -1.82
PTCH1-223	ENST00000551623	TSPYL5	Q86VY4	417 aa	Predicted RBP	3.7	□□□□□ -1.82
PTCH1-223	ENST00000551623	HID1	Q8IV36	788 aa		3.7	□□□□□ -1.82
PTCH1-223	ENST00000551623	UNC5CL	Q8IV45	518 aa		3.7	□□□□□ -1.82
PTCH1-223	ENST00000551623	SIRT2	Q8IXJ6	389 aa		3.7	□□□□□ -1.82
PTCH1-223	ENST00000551623	TP53I13	Q8NBR0	393 aa	Predicted RBP	3.7	□□□□□ -1.82
PTCH1-223	ENST00000551623	GPATCH2	Q9NW75	528 aa		3.7	□□□□□ -1.82
PTCH1-223	ENST00000551623	EBF1	Q9UH73	591 aa		3.7	□□□□□ -1.82
PTCH1-223	ENST00000551623	SAMM50	Q9Y512	469 aa		3.7	□□□□□ -1.82
PTCH1-223	ENST00000551623	PCDHA11	Q9Y5I1	949 aa		3.7	□□□□□ -1.82
PTCH1-223	ENST00000551623	KIF15	Q9NS87	1388 aa		3.7	□□□□□ -1.82
PTCH1-223	ENST00000551623	ADGRL2	O95490	1459 aa		3.7	□□□□□ -1.82

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