RNA–Protein interactions for RNA: ENST00000547486.1

CPSF6-204, Transcript of cleavage and polyadenylation specific factor 6, humanhuman

TSL 2

Gene CPSF6, Length 872 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF6-204ENST00000547486 TICAM2Q86XR7 235 aa15.8■□□□□ 0.12
CPSF6-204ENST00000547486 OSBPL3Q9H4L5 887 aa15.8■□□□□ 0.12
CPSF6-204ENST00000547486 PHF24Q9UPV7 400 aa15.8■□□□□ 0.12
CPSF6-204ENST00000547486 MTMR7Q9Y216 660 aa15.8■□□□□ 0.12
CPSF6-204ENST00000547486 PLA2G6O60733 806 aa15.79■□□□□ 0.12
CPSF6-204ENST00000547486 ADAMTS4O75173 837 aa15.79■□□□□ 0.12
CPSF6-204ENST00000547486 FDX1P10109 184 aa15.79■□□□□ 0.12
CPSF6-204ENST00000547486 HAND2P61296 217 aa15.79■□□□□ 0.12
CPSF6-204ENST00000547486 IRX5P78411 483 aaPredicted RBP15.79■□□□□ 0.12
CPSF6-204ENST00000547486 CNTN2Q02246 1040 aa15.79■□□□□ 0.12
CPSF6-204ENST00000547486 IKQ13123 557 aaPredicted RBP15.79■□□□□ 0.12
CPSF6-204ENST00000547486 RRP12Q5JTH9 1297 aaKnown RBP15.79■□□□□ 0.12
CPSF6-204ENST00000547486 PPP4R3BQ5MIZ7 849 aa15.79■□□□□ 0.12
CPSF6-204ENST00000547486 SH3RF1Q7Z6J0 888 aa15.79■□□□□ 0.12
CPSF6-204ENST00000547486 TOMM22Q9NS69 142 aa15.79■□□□□ 0.12
CPSF6-204ENST00000547486 FBXO40Q9UH90 709 aa15.79■□□□□ 0.12
CPSF6-204ENST00000547486 PRR12Q9ULL5 1215 aa15.79■□□□□ 0.12
CPSF6-204ENST00000547486 CCDC171Q6TFL3 1326 aa15.78■□□□□ 0.12
CPSF6-204ENST00000547486 ADCY6O43306 1168 aa15.78■□□□□ 0.12
CPSF6-204ENST00000547486 ACVR2BQ13705 512 aa15.78■□□□□ 0.12
CPSF6-204ENST00000547486 C1orf53Q5VUE5 145 aa15.78■□□□□ 0.12
CPSF6-204ENST00000547486 TTBK2Q6IQ55 1244 aa15.78■□□□□ 0.12
CPSF6-204ENST00000547486 CCDC174Q6PII3 467 aa15.78■□□□□ 0.12
CPSF6-204ENST00000547486 RNF180Q86T96 592 aa15.78■□□□□ 0.12
CPSF6-204ENST00000547486 TMEM47Q9BQJ4 181 aa15.78■□□□□ 0.12
CPSF6-204ENST00000547486 A1CFQ9NQ94 594 aaKnown RBP15.78■□□□□ 0.12
CPSF6-204ENST00000547486 CDKN2AIPQ9NXV6 580 aaPredicted RBP15.78■□□□□ 0.12
CPSF6-204ENST00000547486 ZHX1Q9UKY1 873 aaPredicted RBP15.78■□□□□ 0.12
CPSF6-204ENST00000547486 FAM184BQ9ULE4 1060 aa15.78■□□□□ 0.12
CPSF6-204ENST00000547486 MYH4Q9Y623 1939 aa15.78■□□□□ 0.12
CPSF6-204ENST00000547486 SMCHD1A6NHR9 2005 aa15.77■□□□□ 0.12
CPSF6-204ENST00000547486 SYNRGQ9UMZ2 1314 aa15.77■□□□□ 0.12
CPSF6-204ENST00000547486 TRIM43BA6NCK2 446 aa15.77■□□□□ 0.12
CPSF6-204ENST00000547486 MYADML2A6NDP7 307 aa15.77■□□□□ 0.12
CPSF6-204ENST00000547486 SOWAHBA6NEL2 793 aa15.77■□□□□ 0.12
CPSF6-204ENST00000547486 SLC16A2P36021 539 aa15.77■□□□□ 0.12
CPSF6-204ENST00000547486 TLE2Q04725 743 aa15.77■□□□□ 0.12
CPSF6-204ENST00000547486 MUM1L1Q5H9M0 696 aa15.77■□□□□ 0.12
CPSF6-204ENST00000547486 CCSAPQ6IQ19 270 aaPredicted RBP15.77■□□□□ 0.12
CPSF6-204ENST00000547486 ARMCX2Q7L311 632 aa15.77■□□□□ 0.12
CPSF6-204ENST00000547486 TBC1D10CQ8IV04 446 aa15.77■□□□□ 0.12
CPSF6-204ENST00000547486 CCDC144CPQ8IYA2 1237 aa15.77■□□□□ 0.12
CPSF6-204ENST00000547486 FAM133AQ8N9E0 248 aa15.77■□□□□ 0.12
CPSF6-204ENST00000547486 KLHDC9Q8NEP7 349 aa15.77■□□□□ 0.12
CPSF6-204ENST00000547486 TRIM43Q96BQ3 446 aaPredicted RBP15.77■□□□□ 0.12
CPSF6-204ENST00000547486 TRERF1Q96PN7 1200 aa15.77■□□□□ 0.12
CPSF6-204ENST00000547486 LBHD1Q9BQE6 289 aaPredicted RBP15.77■□□□□ 0.12
CPSF6-204ENST00000547486 KATNBL1Q9H079 304 aa15.77■□□□□ 0.12
CPSF6-204ENST00000547486 ACAD9Q9H845 621 aa15.77■□□□□ 0.12
CPSF6-204ENST00000547486 RNF146Q9NTX7 359 aa15.77■□□□□ 0.12
CPSF6-204ENST00000547486 TCP11L1Q9NUJ3 509 aa15.77■□□□□ 0.12
CPSF6-204ENST00000547486 DDX49Q9Y6V7 483 aaKnown RBP15.77■□□□□ 0.12
CPSF6-204ENST00000547486 ZMYM6O95789 1325 aa15.76■□□□□ 0.11
CPSF6-204ENST00000547486 A0A1W2PQ45 241 aaPredicted RBP15.76■□□□□ 0.11
CPSF6-204ENST00000547486 A0A1W2PQY0 241 aa15.76■□□□□ 0.11
CPSF6-204ENST00000547486 ALAS1P13196 640 aa15.76■□□□□ 0.11
CPSF6-204ENST00000547486 ACLYP53396 1101 aa15.76■□□□□ 0.11
CPSF6-204ENST00000547486 CCDC144BQ3MJ40 725 aa15.76■□□□□ 0.11
CPSF6-204ENST00000547486 AKNAD1Q5T1N1 836 aa15.76■□□□□ 0.11
CPSF6-204ENST00000547486 DCAF4Q8WV16 495 aa15.76■□□□□ 0.11
CPSF6-204ENST00000547486 ABHD16BQ9H3Z7 469 aa15.76■□□□□ 0.11
CPSF6-204ENST00000547486 PRDM5Q9NQX1 630 aaPredicted RBP15.76■□□□□ 0.11
CPSF6-204ENST00000547486 PDLIM7Q9NR12 457 aa15.76■□□□□ 0.11
CPSF6-204ENST00000547486 PRKAG2Q9UGJ0 569 aa15.76■□□□□ 0.11
CPSF6-204ENST00000547486 SUPT16HQ9Y5B9 1047 aaKnown RBP15.76■□□□□ 0.11
CPSF6-204ENST00000547486 ASTN1O14525 1302 aa15.75■□□□□ 0.11
CPSF6-204ENST00000547486 POTEB2H3BUK9 544 aa15.75■□□□□ 0.11
CPSF6-204ENST00000547486 DUSP11O75319 330 aaKnown RBP15.75■□□□□ 0.11
CPSF6-204ENST00000547486 TOP1P11387 765 aaKnown RBP15.75■□□□□ 0.11
CPSF6-204ENST00000547486 ITGB8P26012 769 aa15.75■□□□□ 0.11
CPSF6-204ENST00000547486 KCNA10Q16322 511 aa15.75■□□□□ 0.11
CPSF6-204ENST00000547486 CCDC96Q2M329 555 aa15.75■□□□□ 0.11
CPSF6-204ENST00000547486 TKFCQ3LXA3 575 aa15.75■□□□□ 0.11
CPSF6-204ENST00000547486 CWC27Q6UX04 472 aaKnown RBP15.75■□□□□ 0.11
CPSF6-204ENST00000547486 BTNL9Q6UXG8 535 aa15.75■□□□□ 0.11
CPSF6-204ENST00000547486 MFSD6Q6ZSS7 791 aa15.75■□□□□ 0.11
CPSF6-204ENST00000547486 Q7L0L9 218 aa15.75■□□□□ 0.11
CPSF6-204ENST00000547486 BADQ92934 168 aa15.75■□□□□ 0.11
CPSF6-204ENST00000547486 PURBQ96QR8 312 aaKnown RBP15.75■□□□□ 0.11
CPSF6-204ENST00000547486 TSEN34Q9BSV6 310 aaKnown RBP15.75■□□□□ 0.11
CPSF6-204ENST00000547486 FRMPD2Q68DX3 1309 aaPredicted RBP15.74■□□□□ 0.11
CPSF6-204ENST00000547486 PLXNA1Q9UIW2 1896 aa15.74■□□□□ 0.11
CPSF6-204ENST00000547486 LAMA2P24043 3122 aaKnown RBP15.74■□□□□ 0.11
CPSF6-204ENST00000547486 GPR153Q6NV75 609 aa15.74■□□□□ 0.11
CPSF6-204ENST00000547486 RANBP17Q9H2T7 1088 aaKnown RBP15.74■□□□□ 0.11
CPSF6-204ENST00000547486 GPCPD1Q9NPB8 672 aa15.74■□□□□ 0.11
CPSF6-204ENST00000547486 C11orf97A0A1B0GVM6 126 aaPredicted RBP15.73■□□□□ 0.11
CPSF6-204ENST00000547486 ZNF213O14771 459 aa15.73■□□□□ 0.11
CPSF6-204ENST00000547486 CTAGE5O15320 804 aa15.73■□□□□ 0.11
CPSF6-204ENST00000547486 ICAM1P05362 532 aa15.73■□□□□ 0.11
CPSF6-204ENST00000547486 PDHBP11177 359 aa15.73■□□□□ 0.11
CPSF6-204ENST00000547486 PTGS1P23219 599 aa15.73■□□□□ 0.11
CPSF6-204ENST00000547486 SHHQ15465 462 aa15.73■□□□□ 0.11
CPSF6-204ENST00000547486 C9orf50Q5SZB4 431 aa15.73■□□□□ 0.11
CPSF6-204ENST00000547486 SYDE2Q5VT97 1194 aa15.73■□□□□ 0.11
CPSF6-204ENST00000547486 DEFB123Q8N688 67 aa15.73■□□□□ 0.11
CPSF6-204ENST00000547486 TTC14Q96N46 770 aa15.73■□□□□ 0.11
CPSF6-204ENST00000547486 ZKSCAN3Q9BRR0 538 aa15.73■□□□□ 0.11
CPSF6-204ENST00000547486 CYP39A1Q9NYL5 469 aa15.73■□□□□ 0.11
CPSF6-204ENST00000547486 CCPG1Q9ULG6 757 aa15.73■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms