RNA–Protein interactions for RNA: ENST00000543140.5

COL4A1-204, Transcript of collagen type IV alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A1, Length 2,547 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-204ENST00000543140 GTPBP6O43824 516 aaPredicted RBP18.47■□□□□ 0.55
COL4A1-204ENST00000543140 UBA7P41226 1012 aa18.47■□□□□ 0.55
COL4A1-204ENST00000543140 AOC3Q16853 763 aa18.47■□□□□ 0.55
COL4A1-204ENST00000543140 ASPRV1Q53RT3 343 aa18.47■□□□□ 0.55
COL4A1-204ENST00000543140 ZSCAN29Q8IWY8 852 aaPredicted RBP18.47■□□□□ 0.55
COL4A1-204ENST00000543140 REXO1Q8N1G1 1221 aaKnown RBP18.47■□□□□ 0.55
COL4A1-204ENST00000543140 TBCKQ8TEA7 893 aa18.47■□□□□ 0.55
COL4A1-204ENST00000543140 ZDHHC15Q96MV8 337 aa18.47■□□□□ 0.55
COL4A1-204ENST00000543140 DISC1Q9NRI5 854 aa18.47■□□□□ 0.55
COL4A1-204ENST00000543140 MYH4Q9Y623 1939 aa18.47■□□□□ 0.55
COL4A1-204ENST00000543140 SLC16A2P36021 539 aa18.47■□□□□ 0.55
COL4A1-204ENST00000543140 DACT2Q5SW24 774 aa18.47■□□□□ 0.55
COL4A1-204ENST00000543140 RRAGBQ5VZM2 374 aa18.47■□□□□ 0.55
COL4A1-204ENST00000543140 E4F1Q66K89 784 aaPredicted RBP18.47■□□□□ 0.55
COL4A1-204ENST00000543140 PYM1Q9BRP8 204 aaKnown RBP18.47■□□□□ 0.55
COL4A1-204ENST00000543140 CTNND2Q9UQB3 1225 aa18.47■□□□□ 0.55
COL4A1-204ENST00000543140 MAPK8IP1Q9UQF2 711 aa18.47■□□□□ 0.55
COL4A1-204ENST00000543140 PTPN14Q15678 1187 aa18.46■□□□□ 0.55
COL4A1-204ENST00000543140 NAALADL2Q58DX5 795 aa18.46■□□□□ 0.55
COL4A1-204ENST00000543140 STRIP1Q5VSL9 837 aa18.46■□□□□ 0.55
COL4A1-204ENST00000543140 SPATA1Q5VX52 437 aa18.46■□□□□ 0.55
COL4A1-204ENST00000543140 STYK1Q6J9G0 422 aa18.46■□□□□ 0.55
COL4A1-204ENST00000543140 KCTD1Q719H9 257 aa18.46■□□□□ 0.55
COL4A1-204ENST00000543140 NEK8Q86SG6 692 aa18.46■□□□□ 0.55
COL4A1-204ENST00000543140 DNAJC18Q9H819 358 aa18.46■□□□□ 0.55
COL4A1-204ENST00000543140 DDTLA6NHG4 134 aaPredicted RBP18.46■□□□□ 0.55
COL4A1-204ENST00000543140 SNHG28P0DPA3 235 aa18.46■□□□□ 0.55
COL4A1-204ENST00000543140 ZNF543Q08ER8 600 aa18.46■□□□□ 0.55
COL4A1-204ENST00000543140 CCDC96Q2M329 555 aa18.46■□□□□ 0.55
COL4A1-204ENST00000543140 CEP135Q66GS9 1140 aa18.46■□□□□ 0.55
COL4A1-204ENST00000543140 ADGRF4Q8IZF3 695 aa18.45■□□□□ 0.54
COL4A1-204ENST00000543140 RPN1P04843 607 aaKnown RBP18.45■□□□□ 0.54
COL4A1-204ENST00000543140 OR52Z1P0C646 297 aa18.45■□□□□ 0.54
COL4A1-204ENST00000543140 EZH2Q15910 746 aaKnown RBP18.45■□□□□ 0.54
COL4A1-204ENST00000543140 NYAP1Q6ZVC0 841 aa18.45■□□□□ 0.54
COL4A1-204ENST00000543140 FAM177A1Q8N128 213 aaPredicted RBP18.45■□□□□ 0.54
COL4A1-204ENST00000543140 JMJD4Q9H9V9 463 aa18.45■□□□□ 0.54
COL4A1-204ENST00000543140 LAD1O00515 517 aa18.44■□□□□ 0.54
COL4A1-204ENST00000543140 NRDCO43847 1150 aa18.44■□□□□ 0.54
COL4A1-204ENST00000543140 TECP42680 631 aa18.44■□□□□ 0.54
COL4A1-204ENST00000543140 EN1Q05925 392 aaPredicted RBP18.44■□□□□ 0.54
COL4A1-204ENST00000543140 LRRC15Q8TF66 581 aa18.44■□□□□ 0.54
COL4A1-204ENST00000543140 FAM198AQ9UFP1 575 aa18.44■□□□□ 0.54
COL4A1-204ENST00000543140 GDAQ9Y2T3 454 aa18.44■□□□□ 0.54
COL4A1-204ENST00000543140 ADCY7P51828 1080 aa18.44■□□□□ 0.54
COL4A1-204ENST00000543140 HSP90AA2PQ14568 343 aaPredicted RBP18.44■□□□□ 0.54
COL4A1-204ENST00000543140 TNS1Q9HBL0 1735 aaKnown RBP18.43■□□□□ 0.54
COL4A1-204ENST00000543140 TEX33O43247 280 aa18.43■□□□□ 0.54
COL4A1-204ENST00000543140 PPP1R11O60927 126 aaPredicted RBP18.43■□□□□ 0.54
COL4A1-204ENST00000543140 GTF2F1P35269 517 aaKnown RBP eCLIP18.43■□□□□ 0.54
COL4A1-204ENST00000543140 PRPHP41219 470 aa18.43■□□□□ 0.54
COL4A1-204ENST00000543140 NR1I3Q14994 352 aa18.43■□□□□ 0.54
COL4A1-204ENST00000543140 SPECC1LQ69YQ0 1117 aa18.43■□□□□ 0.54
COL4A1-204ENST00000543140 POTEDQ86YR6 584 aa18.43■□□□□ 0.54
COL4A1-204ENST00000543140 USP17L10C9JJH3 530 aa18.43■□□□□ 0.54
COL4A1-204ENST00000543140 ADKP55263 362 aaKnown RBP18.43■□□□□ 0.54
COL4A1-204ENST00000543140 SLC15A2Q16348 729 aa18.43■□□□□ 0.54
COL4A1-204ENST00000543140 CT47A1Q5JQC4 288 aaPredicted RBP18.43■□□□□ 0.54
COL4A1-204ENST00000543140 SH3BP5LQ7L8J4 393 aa18.43■□□□□ 0.54
COL4A1-204ENST00000543140 CREBRFQ8IUR6 639 aa18.43■□□□□ 0.54
COL4A1-204ENST00000543140 CNKSR1Q969H4 720 aa18.43■□□□□ 0.54
COL4A1-204ENST00000543140 CCSER1Q9C0I3 900 aa18.43■□□□□ 0.54
COL4A1-204ENST00000543140 MYO3BQ8WXR4 1341 aa18.43■□□□□ 0.54
COL4A1-204ENST00000543140 ESYT2A0FGR8 921 aa18.42■□□□□ 0.54
COL4A1-204ENST00000543140 DHX8Q14562 1220 aaKnown RBP18.42■□□□□ 0.54
COL4A1-204ENST00000543140 UBE2SQ16763 222 aa18.42■□□□□ 0.54
COL4A1-204ENST00000543140 APTXQ7Z2E3 356 aaKnown RBP18.42■□□□□ 0.54
COL4A1-204ENST00000543140 CABP7Q86V35 215 aa18.42■□□□□ 0.54
COL4A1-204ENST00000543140 PPP1R13BQ96KQ4 1090 aa18.42■□□□□ 0.54
COL4A1-204ENST00000543140 PDGFDQ9GZP0 370 aaPredicted RBP18.42■□□□□ 0.54
COL4A1-204ENST00000543140 PNMA6FA0A0J9YX94 578 aa18.42■□□□□ 0.54
COL4A1-204ENST00000543140 A0A1B0GTH6 734 aa18.42■□□□□ 0.54
COL4A1-204ENST00000543140 PLCG1P19174 1290 aa18.42■□□□□ 0.54
COL4A1-204ENST00000543140 TXKP42681 527 aa18.42■□□□□ 0.54
COL4A1-204ENST00000543140 TBX2Q13207 712 aaPredicted RBP18.42■□□□□ 0.54
COL4A1-204ENST00000543140 CERKLQ49MI3 558 aaPredicted RBP18.42■□□□□ 0.54
COL4A1-204ENST00000543140 ZNF658Q5TYW1 1059 aaPredicted RBP18.42■□□□□ 0.54
COL4A1-204ENST00000543140 CDKAL1Q5VV42 579 aa18.42■□□□□ 0.54
COL4A1-204ENST00000543140 EHD4Q9H223 541 aa18.42■□□□□ 0.54
COL4A1-204ENST00000543140 TDRD3Q9H7E2 651 aaKnown RBP18.42■□□□□ 0.54
COL4A1-204ENST00000543140 PI4KBQ9UBF8 816 aa18.42■□□□□ 0.54
COL4A1-204ENST00000543140 SIPA1L1O43166 1804 aa18.41■□□□□ 0.54
COL4A1-204ENST00000543140 C21orf2O43822 256 aa18.41■□□□□ 0.54
COL4A1-204ENST00000543140 EEF2P13639 858 aaKnown RBP18.41■□□□□ 0.54
COL4A1-204ENST00000543140 PRCPP42785 496 aa18.41■□□□□ 0.54
COL4A1-204ENST00000543140 NELFBQ8WX92 580 aa18.41■□□□□ 0.54
COL4A1-204ENST00000543140 TRIM34Q9BYJ4 488 aa18.41■□□□□ 0.54
COL4A1-204ENST00000543140 RMND1Q9NWS8 449 aa18.41■□□□□ 0.54
COL4A1-204ENST00000543140 TDP2O95551 362 aa18.41■□□□□ 0.54
COL4A1-204ENST00000543140 TNNI2P48788 182 aa18.41■□□□□ 0.54
COL4A1-204ENST00000543140 C7orf43Q8WVR3 580 aa18.41■□□□□ 0.54
COL4A1-204ENST00000543140 DHX36Q9H2U1 1008 aaKnown RBP18.41■□□□□ 0.54
COL4A1-204ENST00000543140 TMX1Q9H3N1 280 aa18.41■□□□□ 0.54
COL4A1-204ENST00000543140 KCND1Q9NSA2 647 aa18.41■□□□□ 0.54
COL4A1-204ENST00000543140 PAXBP1Q9Y5B6 917 aa18.41■□□□□ 0.54
COL4A1-204ENST00000543140 GREB1LQ9C091 1923 aaPredicted RBP18.4■□□□□ 0.54
COL4A1-204ENST00000543140 hCG_1984214I3L0E3 225 aa18.4■□□□□ 0.54
COL4A1-204ENST00000543140 SLC37A4O43826 429 aa18.4■□□□□ 0.54
COL4A1-204ENST00000543140 CCT6AP40227 531 aaKnown RBP18.4■□□□□ 0.54
COL4A1-204ENST00000543140 PAK1Q13153 545 aa18.4■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms