RNA–Protein interactions for RNA: ENST00000542663.1

CLSTN3-214, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 390 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-214ENST00000542663 DDX19BQ9UMR2 479 aa21.33■■□□□ 1.01
CLSTN3-214ENST00000542663 A0A0U1RQG5 324 aaPredicted RBP21.32■■□□□ 1
CLSTN3-214ENST00000542663 ZBED4O75132 1171 aa21.32■■□□□ 1
CLSTN3-214ENST00000542663 ACRP10323 421 aa21.32■■□□□ 1
CLSTN3-214ENST00000542663 KIFC2Q96AC6 838 aa21.32■■□□□ 1
CLSTN3-214ENST00000542663 PPP1R12CQ9BZL4 782 aa21.32■■□□□ 1
CLSTN3-214ENST00000542663 MKNK2Q9HBH9 465 aa21.32■■□□□ 1
CLSTN3-214ENST00000542663 MINDY4BA8MYZ0 360 aa21.31■■□□□ 1
CLSTN3-214ENST00000542663 MS4A1P11836 297 aa21.31■■□□□ 1
CLSTN3-214ENST00000542663 GNASQ5JWF2 1037 aa21.31■■□□□ 1
CLSTN3-214ENST00000542663 GIMAP6Q6P9H5 292 aa21.31■■□□□ 1
CLSTN3-214ENST00000542663 ZNF365Q70YC5 407 aa21.31■■□□□ 1
CLSTN3-214ENST00000542663 CCDC144CPQ8IYA2 1237 aa21.31■■□□□ 1
CLSTN3-214ENST00000542663 ANKRD35Q8N283 1001 aa21.31■■□□□ 1
CLSTN3-214ENST00000542663 MKL1Q969V6 931 aa21.31■■□□□ 1
CLSTN3-214ENST00000542663 PRDM12Q9H4Q4 367 aa21.31■■□□□ 1
CLSTN3-214ENST00000542663 EPB41L4AQ9HCS5 686 aaPredicted RBP21.31■■□□□ 1
CLSTN3-214ENST00000542663 TCF20Q9UGU0 1960 aaKnown RBP21.3■■□□□ 1
CLSTN3-214ENST00000542663 SCN5AQ14524 2016 aa21.3■■□□□ 1
CLSTN3-214ENST00000542663 SMARCA5O60264 1052 aaPredicted RBP21.3■■□□□ 1
CLSTN3-214ENST00000542663 CD4P01730 458 aa21.3■■□□□ 1
CLSTN3-214ENST00000542663 NKX3-2P78367 333 aa21.3■■□□□ 1
CLSTN3-214ENST00000542663 CCDC129Q6ZRS4 1044 aa21.3■■□□□ 1
CLSTN3-214ENST00000542663 TMEM199Q8N511 208 aa21.3■■□□□ 1
CLSTN3-214ENST00000542663 CHST13Q8NET6 341 aa21.3■■□□□ 1
CLSTN3-214ENST00000542663 OSBP2Q969R2 916 aa21.3■■□□□ 1
CLSTN3-214ENST00000542663 VTI1AQ96AJ9 217 aa21.3■■□□□ 1
CLSTN3-214ENST00000542663 CEP95Q96GE4 821 aa21.3■■□□□ 1
CLSTN3-214ENST00000542663 ASTN1O14525 1302 aa21.29■■□□□ 1
CLSTN3-214ENST00000542663 C11orf97A0A1B0GVM6 126 aaPredicted RBP21.29■■□□□ 1
CLSTN3-214ENST00000542663 TNFRSF10AO00220 468 aa21.29■■□□□ 1
CLSTN3-214ENST00000542663 CYP2C18P33260 490 aa21.29■■□□□ 1
CLSTN3-214ENST00000542663 BEX3Q00994 111 aa21.29■■□□□ 1
CLSTN3-214ENST00000542663 CNTN2Q02246 1040 aa21.29■■□□□ 1
CLSTN3-214ENST00000542663 PSRC1Q6PGN9 363 aaPredicted RBP21.29■■□□□ 1
CLSTN3-214ENST00000542663 CCDC174Q6PII3 467 aa21.29■■□□□ 1
CLSTN3-214ENST00000542663 PPM1EQ8WY54 764 aa21.29■■□□□ 1
CLSTN3-214ENST00000542663 GAS2L1Q99501 681 aaPredicted RBP21.29■■□□□ 1
CLSTN3-214ENST00000542663 LRRCC1Q9C099 1032 aa21.29■■□□□ 1
CLSTN3-214ENST00000542663 SPC25Q9HBM1 224 aa21.29■■□□□ 1
CLSTN3-214ENST00000542663 MTMR4Q9NYA4 1195 aa21.29■■□□□ 1
CLSTN3-214ENST00000542663 FBXO40Q9UH90 709 aa21.29■■□□□ 1
CLSTN3-214ENST00000542663 FEM1BQ9UK73 627 aa21.29■■□□□ 1
CLSTN3-214ENST00000542663 PRDM1O75626 825 aa21.28■■□□□ 1
CLSTN3-214ENST00000542663 OAZ1P54368 228 aa21.28■■□□□ 1
CLSTN3-214ENST00000542663 ADGRE1Q14246 886 aa21.28■■□□□ 1
CLSTN3-214ENST00000542663 AKNAD1Q5T1N1 836 aa21.28■■□□□ 1
CLSTN3-214ENST00000542663 LRRC47Q8N1G4 583 aaKnown RBP21.28■■□□□ 1
CLSTN3-214ENST00000542663 FAM133AQ8N9E0 248 aa21.28■■□□□ 1
CLSTN3-214ENST00000542663 HOMER2Q9NSB8 354 aa21.28■■□□□ 1
CLSTN3-214ENST00000542663 CXXC1Q9P0U4 656 aaPredicted RBP21.28■■□□□ 1
CLSTN3-214ENST00000542663 CTDP1Q9Y5B0 961 aaPredicted RBP21.28■■□□□ 1
CLSTN3-214ENST00000542663 UMODL1Q5DID0 1318 aa21.28■■□□□ 1
CLSTN3-214ENST00000542663 PLIN4Q96Q06 1357 aa21.27■■□□□ 1
CLSTN3-214ENST00000542663 KBTBD3Q8NAB2 608 aa21.27■■□□□ 1
CLSTN3-214ENST00000542663 SLC43A3Q8NBI5 491 aa21.27■■□□□ 1
CLSTN3-214ENST00000542663 GMCL1P1Q8NEA9 526 aa21.27■■□□□ 1
CLSTN3-214ENST00000542663 HERVK_113Q902F9 699 aa21.27■■□□□ 1
CLSTN3-214ENST00000542663 IL23AQ9NPF7 189 aa21.27■■□□□ 1
CLSTN3-214ENST00000542663 TRANK1O15050 2925 aa21.27■■□□□ 1
CLSTN3-214ENST00000542663 XIRP2A4UGR9 3374 aa21.26■□□□□ 0.99
CLSTN3-214ENST00000542663 TLR3O15455 904 aaKnown RBP21.26■□□□□ 0.99
CLSTN3-214ENST00000542663 PTGS1P23219 599 aa21.26■□□□□ 0.99
CLSTN3-214ENST00000542663 ATXN2LQ8WWM7 1075 aaKnown RBP21.26■□□□□ 0.99
CLSTN3-214ENST00000542663 APPBP2Q92624 585 aa21.26■□□□□ 0.99
CLSTN3-214ENST00000542663 ECHDC1Q9NTX5 307 aa21.26■□□□□ 0.99
CLSTN3-214ENST00000542663 SYNPO2Q9UMS6 1093 aa21.26■□□□□ 0.99
CLSTN3-214ENST00000542663 GNEQ9Y223 722 aaKnown RBP21.26■□□□□ 0.99
CLSTN3-214ENST00000542663 ZNF536O15090 1300 aa21.26■□□□□ 0.99
CLSTN3-214ENST00000542663 SOWAHBA6NEL2 793 aa21.25■□□□□ 0.99
CLSTN3-214ENST00000542663 M0R2C6 588 aa21.25■□□□□ 0.99
CLSTN3-214ENST00000542663 GPAA1O43292 621 aa21.25■□□□□ 0.99
CLSTN3-214ENST00000542663 TTLL1O95922 423 aa21.25■□□□□ 0.99
CLSTN3-214ENST00000542663 TNFAIP2Q03169 654 aa21.25■□□□□ 0.99
CLSTN3-214ENST00000542663 CXCL17Q6UXB2 119 aa21.25■□□□□ 0.99
CLSTN3-214ENST00000542663 ZNF444Q8N0Y2 327 aaPredicted RBP21.25■□□□□ 0.99
CLSTN3-214ENST00000542663 ACAD9Q9H845 621 aa21.25■□□□□ 0.99
CLSTN3-214ENST00000542663 A1CFQ9NQ94 594 aaKnown RBP21.25■□□□□ 0.99
CLSTN3-214ENST00000542663 YBX2Q9Y2T7 364 aaKnown RBP21.25■□□□□ 0.99
CLSTN3-214ENST00000542663 DDX49Q9Y6V7 483 aaKnown RBP21.25■□□□□ 0.99
CLSTN3-214ENST00000542663 GRIN2DO15399 1336 aa21.25■□□□□ 0.99
CLSTN3-214ENST00000542663 NCOR1O75376 2440 aa21.24■□□□□ 0.99
CLSTN3-214ENST00000542663 RNF113AO15541 343 aaKnown RBP21.24■□□□□ 0.99
CLSTN3-214ENST00000542663 BMP3P12645 472 aa21.24■□□□□ 0.99
CLSTN3-214ENST00000542663 COL9A1P20849 921 aa21.24■□□□□ 0.99
CLSTN3-214ENST00000542663 SLFN13Q68D06 897 aa21.24■□□□□ 0.99
CLSTN3-214ENST00000542663 AGBL1Q96MI9 1066 aa21.24■□□□□ 0.99
CLSTN3-214ENST00000542663 ASB2Q96Q27 587 aa21.24■□□□□ 0.99
CLSTN3-214ENST00000542663 NKX2-4Q9H2Z4 354 aa21.24■□□□□ 0.99
CLSTN3-214ENST00000542663 THEGQ9P2T0 379 aa21.24■□□□□ 0.99
CLSTN3-214ENST00000542663 TANC1Q9C0D5 1861 aa21.24■□□□□ 0.99
CLSTN3-214ENST00000542663 PTPRSQ13332 1948 aa21.23■□□□□ 0.99
CLSTN3-214ENST00000542663 TMEM232C9JQI7 657 aa21.23■□□□□ 0.99
CLSTN3-214ENST00000542663 TDO2P48775 406 aa21.23■□□□□ 0.99
CLSTN3-214ENST00000542663 RAB30Q15771 203 aa21.23■□□□□ 0.99
CLSTN3-214ENST00000542663 CCDC85BQ15834 202 aaPredicted RBP21.23■□□□□ 0.99
CLSTN3-214ENST00000542663 TSHZ3Q63HK5 1081 aa21.23■□□□□ 0.99
CLSTN3-214ENST00000542663 TLK2Q86UE8 772 aa21.23■□□□□ 0.99
CLSTN3-214ENST00000542663 NEDD1Q8NHV4 660 aa21.23■□□□□ 0.99
CLSTN3-214ENST00000542663 HIPK3Q9H422 1215 aa21.23■□□□□ 0.99
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms