RNA–Protein interactions for RNA: ENST00000542274.5

CDH3-203, Transcript of cadherin 3, humanhuman

TSL 2

Gene CDH3, Length 2,746 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-203ENST00000542274 GIMAP6Q6P9H5 292 aa12.41□□□□□ -0.42
CDH3-203ENST00000542274 MAB21L3Q8N8X9 362 aa12.41□□□□□ -0.42
CDH3-203ENST00000542274 YIPF3Q9GZM5 350 aa12.41□□□□□ -0.42
CDH3-203ENST00000542274 ERLIN1O75477 346 aa12.4□□□□□ -0.42
CDH3-203ENST00000542274 GYS1P13807 737 aa12.4□□□□□ -0.42
CDH3-203ENST00000542274 FGFR2P21802 821 aa12.4□□□□□ -0.42
CDH3-203ENST00000542274 CHRNDQ07001 517 aa12.4□□□□□ -0.42
CDH3-203ENST00000542274 LRRN4CLQ8ND94 238 aa12.4□□□□□ -0.42
CDH3-203ENST00000542274 NSUN7Q8NE18 718 aaKnown RBP12.4□□□□□ -0.42
CDH3-203ENST00000542274 RUFY1Q96T51 708 aa12.4□□□□□ -0.42
CDH3-203ENST00000542274 LRRC27Q9C0I9 530 aa12.4□□□□□ -0.42
CDH3-203ENST00000542274 GJB4Q9NTQ9 266 aa12.4□□□□□ -0.42
CDH3-203ENST00000542274 DDX20Q9UHI6 824 aaKnown RBP12.4□□□□□ -0.42
CDH3-203ENST00000542274 ZNF510Q9Y2H8 683 aa12.4□□□□□ -0.42
CDH3-203ENST00000542274 SPO11Q9Y5K1 396 aa12.4□□□□□ -0.42
CDH3-203ENST00000542274 VIL1P09327 827 aaKnown RBP12.4□□□□□ -0.42
CDH3-203ENST00000542274 HOXD11P31277 338 aaPredicted RBP12.4□□□□□ -0.42
CDH3-203ENST00000542274 GBP2P32456 591 aaPredicted RBP12.4□□□□□ -0.42
CDH3-203ENST00000542274 COPB2P35606 906 aa12.4□□□□□ -0.42
CDH3-203ENST00000542274 UBE2HP62256 183 aa12.4□□□□□ -0.42
CDH3-203ENST00000542274 ACTN3Q08043 901 aaPredicted RBP12.4□□□□□ -0.42
CDH3-203ENST00000542274 PUM3Q15397 648 aaKnown RBP12.4□□□□□ -0.42
CDH3-203ENST00000542274 SKIDA1Q1XH10 827 aa12.4□□□□□ -0.42
CDH3-203ENST00000542274 KIAA0753Q2KHM9 967 aa12.4□□□□□ -0.42
CDH3-203ENST00000542274 TPTE2Q6XPS3 522 aa12.4□□□□□ -0.42
CDH3-203ENST00000542274 C14orf80Q86SX3 495 aa12.4□□□□□ -0.42
CDH3-203ENST00000542274 MYO1HQ8N1T3 1032 aa12.4□□□□□ -0.42
CDH3-203ENST00000542274 ALS2CR12Q96Q35 445 aa12.4□□□□□ -0.42
CDH3-203ENST00000542274 NYXQ9GZU5 481 aa12.4□□□□□ -0.42
CDH3-203ENST00000542274 BRD8Q9H0E9 1235 aa12.4□□□□□ -0.42
CDH3-203ENST00000542274 CAPN7Q9Y6W3 813 aa12.4□□□□□ -0.42
CDH3-203ENST00000542274 A0A1B0GUL6 1792 aa12.4□□□□□ -0.43
CDH3-203ENST00000542274 MROH5Q6ZUA9 1318 aa12.39□□□□□ -0.43
CDH3-203ENST00000542274 A0A1B0GVG6 124 aa12.39□□□□□ -0.43
CDH3-203ENST00000542274 PTPDC1A2A3K4 754 aa12.39□□□□□ -0.43
CDH3-203ENST00000542274 MYO1FO00160 1098 aa12.39□□□□□ -0.43
CDH3-203ENST00000542274 AP5Z1O43299 807 aa12.39□□□□□ -0.43
CDH3-203ENST00000542274 PDE6AP16499 860 aa12.39□□□□□ -0.43
CDH3-203ENST00000542274 RXRAP19793 462 aa12.39□□□□□ -0.43
CDH3-203ENST00000542274 PDIA3P30101 505 aaKnown RBP12.39□□□□□ -0.43
CDH3-203ENST00000542274 INPP5BP32019 993 aa12.39□□□□□ -0.43
CDH3-203ENST00000542274 ANTXR2P58335 489 aa12.39□□□□□ -0.43
CDH3-203ENST00000542274 ROR2Q01974 943 aaKnown RBP12.39□□□□□ -0.43
CDH3-203ENST00000542274 PTPN14Q15678 1187 aa12.39□□□□□ -0.43
CDH3-203ENST00000542274 OTUD7BQ6GQQ9 843 aa12.39□□□□□ -0.43
CDH3-203ENST00000542274 CEP57Q86XR8 500 aa12.39□□□□□ -0.43
CDH3-203ENST00000542274 LPIN2Q92539 896 aa12.39□□□□□ -0.43
CDH3-203ENST00000542274 BUD13Q9BRD0 619 aaKnown RBP eCLIP12.39□□□□□ -0.43
CDH3-203ENST00000542274 GINM1Q9NU53 330 aa12.39□□□□□ -0.43
CDH3-203ENST00000542274 GCLCP48506 637 aaPredicted RBP12.39□□□□□ -0.43
CDH3-203ENST00000542274 INHBCP55103 352 aa12.39□□□□□ -0.43
CDH3-203ENST00000542274 HDAC4P56524 1084 aa12.39□□□□□ -0.43
CDH3-203ENST00000542274 SF3B3Q15393 1217 aaKnown RBP12.39□□□□□ -0.43
CDH3-203ENST00000542274 CCDC92Q53HC0 331 aaPredicted RBP12.39□□□□□ -0.43
CDH3-203ENST00000542274 TBC1D10CQ8IV04 446 aa12.39□□□□□ -0.43
CDH3-203ENST00000542274 SLF2Q8IX21 1173 aa12.39□□□□□ -0.43
CDH3-203ENST00000542274 HDAC7Q8WUI4 952 aa12.39□□□□□ -0.43
CDH3-203ENST00000542274 NLRP3Q96P20 1036 aa12.39□□□□□ -0.43
CDH3-203ENST00000542274 CDC5LQ99459 802 aaKnown RBP12.39□□□□□ -0.43
CDH3-203ENST00000542274 GORASP1Q9BQQ3 440 aa12.39□□□□□ -0.43
CDH3-203ENST00000542274 TRMT1Q9NXH9 659 aaKnown RBP12.39□□□□□ -0.43
CDH3-203ENST00000542274 TFCP2L1Q9NZI6 479 aa12.39□□□□□ -0.43
CDH3-203ENST00000542274 EPB41L3Q9Y2J2 1087 aaPredicted RBP12.39□□□□□ -0.43
CDH3-203ENST00000542274 MYH7P12883 1935 aa12.39□□□□□ -0.43
CDH3-203ENST00000542274 PFKFB2O60825 505 aa12.39□□□□□ -0.43
CDH3-203ENST00000542274 CAMK4Q16566 473 aa12.39□□□□□ -0.43
CDH3-203ENST00000542274 IMMTQ16891 758 aaKnown RBP12.39□□□□□ -0.43
CDH3-203ENST00000542274 TSR1Q2NL82 804 aaKnown RBP12.39□□□□□ -0.43
CDH3-203ENST00000542274 ANKRD13BQ86YJ7 626 aa12.39□□□□□ -0.43
CDH3-203ENST00000542274 MAGEB6Q8N7X4 407 aa12.39□□□□□ -0.43
CDH3-203ENST00000542274 OSBPL9Q96SU4 736 aa12.39□□□□□ -0.43
CDH3-203ENST00000542274 BATF3Q9NR55 127 aa12.39□□□□□ -0.43
CDH3-203ENST00000542274 ATP6V1DQ9Y5K8 247 aa12.39□□□□□ -0.43
CDH3-203ENST00000542274 FAM169AQ9Y6X4 670 aa12.39□□□□□ -0.43
CDH3-203ENST00000542274 RTL9Q8NET4 1388 aa12.38□□□□□ -0.43
CDH3-203ENST00000542274 ELP1O95163 1332 aa12.38□□□□□ -0.43
CDH3-203ENST00000542274 ARAP2Q8WZ64 1704 aa12.38□□□□□ -0.43
CDH3-203ENST00000542274 SMIM22K7EJ46 135 aa12.38□□□□□ -0.43
CDH3-203ENST00000542274 PRKAB2O43741 272 aa12.38□□□□□ -0.43
CDH3-203ENST00000542274 RPSAP08865 295 aaKnown RBP12.38□□□□□ -0.43
CDH3-203ENST00000542274 APLP1P51693 650 aa12.38□□□□□ -0.43
CDH3-203ENST00000542274 SLC10A5Q5PT55 438 aa12.38□□□□□ -0.43
CDH3-203ENST00000542274 ZNF662Q6ZS27 426 aa12.38□□□□□ -0.43
CDH3-203ENST00000542274 CNBD1Q8NA66 436 aa12.38□□□□□ -0.43
CDH3-203ENST00000542274 SPATA5Q8NB90 893 aa12.38□□□□□ -0.43
CDH3-203ENST00000542274 CCDC47Q96A33 483 aaKnown RBP12.38□□□□□ -0.43
CDH3-203ENST00000542274 ACBD3Q9H3P7 528 aa12.38□□□□□ -0.43
CDH3-203ENST00000542274 SLC39A2Q9NP94 309 aa12.38□□□□□ -0.43
CDH3-203ENST00000542274 ORC3Q9UBD5 711 aaPredicted RBP12.38□□□□□ -0.43
CDH3-203ENST00000542274 CARMIL3Q8ND23 1372 aa12.38□□□□□ -0.43
CDH3-203ENST00000542274 TNS1Q9HBL0 1735 aaKnown RBP12.38□□□□□ -0.43
CDH3-203ENST00000542274 TCRBV5S4A2TA0A5A2 114 aa12.38□□□□□ -0.43
CDH3-203ENST00000542274 H3BQV1 296 aa12.38□□□□□ -0.43
CDH3-203ENST00000542274 PRC1O43663 620 aa12.38□□□□□ -0.43
CDH3-203ENST00000542274 ZFYP08048 801 aaPredicted RBP12.38□□□□□ -0.43
CDH3-203ENST00000542274 SLC5A1P13866 664 aa12.38□□□□□ -0.43
CDH3-203ENST00000542274 EZRP15311 586 aaKnown RBP12.38□□□□□ -0.43
CDH3-203ENST00000542274 IL4RP24394 825 aa12.38□□□□□ -0.43
CDH3-203ENST00000542274 HDLBPQ00341 1268 aaKnown RBP12.38□□□□□ -0.43
CDH3-203ENST00000542274 IFFO2Q5TF58 517 aa12.38□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms