RNA–Protein interactions for RNA: ENST00000540230.5

UBE3B-212, Transcript of ubiquitin protein ligase E3B, humanhuman

TSL 1 (best) BASIC

Gene UBE3B, Length 1,541 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3B-212ENST00000540230 FDX1P10109 184 aa17.68■□□□□ 0.42
UBE3B-212ENST00000540230 SYDE2Q5VT97 1194 aa17.68■□□□□ 0.42
UBE3B-212ENST00000540230 CHST3Q7LGC8 479 aa17.68■□□□□ 0.42
UBE3B-212ENST00000540230 UBAC1Q9BSL1 405 aa17.68■□□□□ 0.42
UBE3B-212ENST00000540230 RANBP17Q9H2T7 1088 aaKnown RBP17.68■□□□□ 0.42
UBE3B-212ENST00000540230 KAT14Q9H8E8 782 aa17.68■□□□□ 0.42
UBE3B-212ENST00000540230 SENP2Q9HC62 589 aa17.68■□□□□ 0.42
UBE3B-212ENST00000540230 DNAJC25-GNG10A0A024R161 153 aa17.67■□□□□ 0.42
UBE3B-212ENST00000540230 CDC45O75419 566 aa17.67■□□□□ 0.42
UBE3B-212ENST00000540230 CYBAP13498 195 aa17.67■□□□□ 0.42
UBE3B-212ENST00000540230 ANTXR2P58335 489 aa17.67■□□□□ 0.42
UBE3B-212ENST00000540230 TRDNQ13061 729 aa17.67■□□□□ 0.42
UBE3B-212ENST00000540230 CCDC178Q5BJE1 867 aa17.67■□□□□ 0.42
UBE3B-212ENST00000540230 PRAMEF19Q5SWL8 479 aa17.67■□□□□ 0.42
UBE3B-212ENST00000540230 KIAA1211Q6ZU35 1233 aa17.67■□□□□ 0.42
UBE3B-212ENST00000540230 DHX30Q7L2E3 1194 aaKnown RBP eCLIP17.67■□□□□ 0.42
UBE3B-212ENST00000540230 DIS3LQ8TF46 1054 aaKnown RBP17.67■□□□□ 0.42
UBE3B-212ENST00000540230 SLC27A2O14975 620 aa17.67■□□□□ 0.42
UBE3B-212ENST00000540230 FARP2O94887 1054 aaPredicted RBP17.67■□□□□ 0.42
UBE3B-212ENST00000540230 ALAS1P13196 640 aa17.67■□□□□ 0.42
UBE3B-212ENST00000540230 MNX1P50219 401 aaPredicted RBP17.67■□□□□ 0.42
UBE3B-212ENST00000540230 MUM1L1Q5H9M0 696 aa17.67■□□□□ 0.42
UBE3B-212ENST00000540230 IFIT1BQ5T764 474 aaKnown RBP17.67■□□□□ 0.42
UBE3B-212ENST00000540230 LHX8Q68G74 356 aa17.67■□□□□ 0.42
UBE3B-212ENST00000540230 MB21D2Q8IYB1 491 aaPredicted RBP17.67■□□□□ 0.42
UBE3B-212ENST00000540230 CHST13Q8NET6 341 aa17.67■□□□□ 0.42
UBE3B-212ENST00000540230 NCOA7Q8NI08 942 aa17.67■□□□□ 0.42
UBE3B-212ENST00000540230 FGD4Q96M96 766 aa17.67■□□□□ 0.42
UBE3B-212ENST00000540230 UBA5Q9GZZ9 404 aa17.67■□□□□ 0.42
UBE3B-212ENST00000540230 RNF146Q9NTX7 359 aa17.67■□□□□ 0.42
UBE3B-212ENST00000540230 PPP4R2Q9NY27 417 aa17.67■□□□□ 0.42
UBE3B-212ENST00000540230 LCTP09848 1927 aa17.66■□□□□ 0.42
UBE3B-212ENST00000540230 NECTIN1Q15223 517 aa17.66■□□□□ 0.42
UBE3B-212ENST00000540230 CREB3L3Q68CJ9 461 aa17.66■□□□□ 0.42
UBE3B-212ENST00000540230 RALYLQ86SE5 291 aaKnown RBP17.66■□□□□ 0.42
UBE3B-212ENST00000540230 SLC5A4Q9NY91 659 aa17.66■□□□□ 0.42
UBE3B-212ENST00000540230 OGDHLQ9ULD0 1010 aa17.66■□□□□ 0.42
UBE3B-212ENST00000540230 MCM3APO60318 1980 aa17.65■□□□□ 0.42
UBE3B-212ENST00000540230 ICAM1P05362 532 aa17.65■□□□□ 0.42
UBE3B-212ENST00000540230 CNGA1P29973 690 aa17.65■□□□□ 0.42
UBE3B-212ENST00000540230 GPATCH4Q5T3I0 446 aaKnown RBP17.65■□□□□ 0.42
UBE3B-212ENST00000540230 ANKRD35Q8N283 1001 aa17.65■□□□□ 0.42
UBE3B-212ENST00000540230 DDX11Q96FC9 970 aa17.65■□□□□ 0.42
UBE3B-212ENST00000540230 TRERF1Q96PN7 1200 aa17.65■□□□□ 0.42
UBE3B-212ENST00000540230 ACAD9Q9H845 621 aa17.65■□□□□ 0.42
UBE3B-212ENST00000540230 A1CFQ9NQ94 594 aaKnown RBP17.65■□□□□ 0.42
UBE3B-212ENST00000540230 FBXO40Q9UH90 709 aa17.65■□□□□ 0.42
UBE3B-212ENST00000540230 CCPG1Q9ULG6 757 aa17.65■□□□□ 0.42
UBE3B-212ENST00000540230 DIS3Q9Y2L1 958 aaKnown RBP17.65■□□□□ 0.42
UBE3B-212ENST00000540230 IFIT3O14879 490 aaKnown RBP17.64■□□□□ 0.41
UBE3B-212ENST00000540230 ANO1Q5XXA6 986 aa17.64■□□□□ 0.41
UBE3B-212ENST00000540230 STAG2Q8N3U4 1231 aa17.64■□□□□ 0.41
UBE3B-212ENST00000540230 PAWRQ96IZ0 340 aaKnown RBP17.64■□□□□ 0.41
UBE3B-212ENST00000540230 TINF2Q9BSI4 451 aa17.64■□□□□ 0.41
UBE3B-212ENST00000540230 GPHNQ9NQX3 736 aaPredicted RBP17.64■□□□□ 0.41
UBE3B-212ENST00000540230 ALPK3Q96L96 1907 aa17.64■□□□□ 0.41
UBE3B-212ENST00000540230 CNTN2Q02246 1040 aa17.63■□□□□ 0.41
UBE3B-212ENST00000540230 DDX20Q9UHI6 824 aaKnown RBP17.63■□□□□ 0.41
UBE3B-212ENST00000540230 ASTN1O14525 1302 aa17.63■□□□□ 0.41
UBE3B-212ENST00000540230 TKFCQ3LXA3 575 aa17.62■□□□□ 0.41
UBE3B-212ENST00000540230 ASPRV1Q53RT3 343 aa17.62■□□□□ 0.41
UBE3B-212ENST00000540230 ERICH6BQ5W0A0 696 aa17.62■□□□□ 0.41
UBE3B-212ENST00000540230 IGDCC4Q8TDY8 1250 aa17.62■□□□□ 0.41
UBE3B-212ENST00000540230 NFIBO00712 420 aa17.62■□□□□ 0.41
UBE3B-212ENST00000540230 SNAI1O95863 264 aaPredicted RBP17.62■□□□□ 0.41
UBE3B-212ENST00000540230 PARP1P09874 1014 aaKnown RBP17.62■□□□□ 0.41
UBE3B-212ENST00000540230 WTAPQ15007 396 aa17.62■□□□□ 0.41
UBE3B-212ENST00000540230 ADGRF4Q8IZF3 695 aa17.62■□□□□ 0.41
UBE3B-212ENST00000540230 FAM133AQ8N9E0 248 aa17.62■□□□□ 0.41
UBE3B-212ENST00000540230 PURBQ96QR8 312 aaKnown RBP17.62■□□□□ 0.41
UBE3B-212ENST00000540230 MAD2L2Q9UI95 211 aa17.62■□□□□ 0.41
UBE3B-212ENST00000540230 DDX49Q9Y6V7 483 aaKnown RBP17.62■□□□□ 0.41
UBE3B-212ENST00000540230 DNAH12Q6ZR08 3092 aa17.61■□□□□ 0.41
UBE3B-212ENST00000540230 MYH6P13533 1939 aa17.61■□□□□ 0.41
UBE3B-212ENST00000540230 SOWAHBA6NEL2 793 aa17.61■□□□□ 0.41
UBE3B-212ENST00000540230 ZNF865P0CJ78 1059 aaPredicted RBP17.61■□□□□ 0.41
UBE3B-212ENST00000540230 SLC35G1Q2M3R5 365 aa17.61■□□□□ 0.41
UBE3B-212ENST00000540230 TMEM67Q5HYA8 995 aa17.61■□□□□ 0.41
UBE3B-212ENST00000540230 CASC1Q6TDU7 716 aa17.61■□□□□ 0.41
UBE3B-212ENST00000540230 MAMDC4Q6UXC1 1216 aa17.61■□□□□ 0.41
UBE3B-212ENST00000540230 ANKLE1Q8NAG6 615 aa17.61■□□□□ 0.41
UBE3B-212ENST00000540230 CLEC4DQ8WXI8 215 aa17.61■□□□□ 0.41
UBE3B-212ENST00000540230 LY9Q9HBG7 655 aa17.61■□□□□ 0.41
UBE3B-212ENST00000540230 CYP39A1Q9NYL5 469 aa17.61■□□□□ 0.41
UBE3B-212ENST00000540230 LRRC37A2A6NM11 1700 aa17.6■□□□□ 0.41
UBE3B-212ENST00000540230 ERICH2A1L162 156 aa17.6■□□□□ 0.41
UBE3B-212ENST00000540230 POTEB2H3BUK9 544 aa17.6■□□□□ 0.41
UBE3B-212ENST00000540230 SEPT4O43236 478 aa17.6■□□□□ 0.41
UBE3B-212ENST00000540230 PRC1O43663 620 aa17.6■□□□□ 0.41
UBE3B-212ENST00000540230 CDC37Q16543 378 aaPredicted RBP17.6■□□□□ 0.41
UBE3B-212ENST00000540230 USH1GQ495M9 461 aa17.6■□□□□ 0.41
UBE3B-212ENST00000540230 NSMFQ6X4W1 530 aa17.6■□□□□ 0.41
UBE3B-212ENST00000540230 RASEFQ8IZ41 740 aa17.6■□□□□ 0.41
UBE3B-212ENST00000540230 LENG1Q96BZ8 264 aaPredicted RBP17.6■□□□□ 0.41
UBE3B-212ENST00000540230 JMJD4Q9H9V9 463 aa17.6■□□□□ 0.41
UBE3B-212ENST00000540230 PFASO15067 1338 aa17.59■□□□□ 0.41
UBE3B-212ENST00000540230 WDR19Q8NEZ3 1342 aa17.59■□□□□ 0.41
UBE3B-212ENST00000540230 SYNGAP1Q96PV0 1343 aa17.59■□□□□ 0.41
UBE3B-212ENST00000540230 TROAPQ12815 778 aa17.59■□□□□ 0.41
UBE3B-212ENST00000540230 NECAB2Q7Z6G3 386 aa17.59■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms