RNA–Protein interactions for RNA: ENST00000539559.6

TMEM260-203, Transcript of transmembrane protein 260, humanhuman

TSL 1 (best)

Gene TMEM260, Length 2,680 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM260-203ENST00000539559 MYH13Q9UKX3 1938 aa22.76■■□□□ 1.23
TMEM260-203ENST00000539559 SMCR8Q8TEV9 937 aaPredicted RBP22.76■■□□□ 1.23
TMEM260-203ENST00000539559 IVLP07476 585 aa22.76■■□□□ 1.23
TMEM260-203ENST00000539559 C2orf54Q08AI8 447 aa22.76■■□□□ 1.23
TMEM260-203ENST00000539559 TRIM14Q14142 442 aa22.76■■□□□ 1.23
TMEM260-203ENST00000539559 MEX3CQ5U5Q3 659 aaKnown RBP22.76■■□□□ 1.23
TMEM260-203ENST00000539559 JAKMIP2Q96AA8 810 aa22.76■■□□□ 1.23
TMEM260-203ENST00000539559 TRIM47Q96LD4 638 aa22.76■■□□□ 1.23
TMEM260-203ENST00000539559 PSMD14O00487 310 aa22.75■■□□□ 1.23
TMEM260-203ENST00000539559 CYP2D6P10635 497 aa22.75■■□□□ 1.23
TMEM260-203ENST00000539559 SCG2P13521 617 aa22.75■■□□□ 1.23
TMEM260-203ENST00000539559 IGHMBP2P38935 993 aaKnown RBP22.75■■□□□ 1.23
TMEM260-203ENST00000539559 CAGE1Q8TC20 777 aa22.75■■□□□ 1.23
TMEM260-203ENST00000539559 ZNF384Q8TF68 577 aa22.75■■□□□ 1.23
TMEM260-203ENST00000539559 MTA3Q9BTC8 594 aa22.75■■□□□ 1.23
TMEM260-203ENST00000539559 HAUS4Q9H6D7 363 aa22.75■■□□□ 1.23
TMEM260-203ENST00000539559 ZNF831Q5JPB2 1677 aa22.75■■□□□ 1.23
TMEM260-203ENST00000539559 LGALS16A8MUM7 142 aa22.75■■□□□ 1.23
TMEM260-203ENST00000539559 GGCXP38435 758 aa22.75■■□□□ 1.23
TMEM260-203ENST00000539559 CTR9Q6PD62 1173 aa22.75■■□□□ 1.23
TMEM260-203ENST00000539559 CLEC4GQ6UXB4 293 aa22.75■■□□□ 1.23
TMEM260-203ENST00000539559 ADSSL1Q8N142 457 aa22.75■■□□□ 1.23
TMEM260-203ENST00000539559 CTCFLQ8NI51 663 aaPredicted RBP22.75■■□□□ 1.23
TMEM260-203ENST00000539559 CERKQ8TCT0 537 aa22.75■■□□□ 1.23
TMEM260-203ENST00000539559 LRRC15Q8TF66 581 aa22.75■■□□□ 1.23
TMEM260-203ENST00000539559 RBM28Q9NW13 759 aaKnown RBP22.75■■□□□ 1.23
TMEM260-203ENST00000539559 ANAPC4Q9UJX5 808 aa22.75■■□□□ 1.23
TMEM260-203ENST00000539559 NAALADL2Q58DX5 795 aa22.75■■□□□ 1.23
TMEM260-203ENST00000539559 DRC1Q96MC2 740 aa22.75■■□□□ 1.23
TMEM260-203ENST00000539559 COL5A3P25940 1745 aaPredicted RBP22.74■■□□□ 1.23
TMEM260-203ENST00000539559 PRPF6O94906 941 aaKnown RBP22.74■■□□□ 1.23
TMEM260-203ENST00000539559 AFAP1L1Q8TED9 768 aa22.74■■□□□ 1.23
TMEM260-203ENST00000539559 TMEM60Q9H2L4 133 aa22.74■■□□□ 1.23
TMEM260-203ENST00000539559 COL4A1P02462 1669 aa22.74■■□□□ 1.23
TMEM260-203ENST00000539559 EIF3CLB5ME19 914 aaKnown RBP22.74■■□□□ 1.23
TMEM260-203ENST00000539559 H7C1D1 291 aa22.74■■□□□ 1.23
TMEM260-203ENST00000539559 PPP2R5BQ15173 497 aa22.74■■□□□ 1.23
TMEM260-203ENST00000539559 EZH2Q15910 746 aaKnown RBP22.74■■□□□ 1.23
TMEM260-203ENST00000539559 KRT26Q7Z3Y9 468 aa22.74■■□□□ 1.23
TMEM260-203ENST00000539559 MSL3Q8N5Y2 521 aaKnown RBP22.74■■□□□ 1.23
TMEM260-203ENST00000539559 ZNF507Q8TCN5 953 aa22.74■■□□□ 1.23
TMEM260-203ENST00000539559 EIF3CQ99613 913 aaKnown RBP22.74■■□□□ 1.23
TMEM260-203ENST00000539559 DNAJC7Q99615 494 aa22.74■■□□□ 1.23
TMEM260-203ENST00000539559 MED4Q9NPJ6 270 aa22.74■■□□□ 1.23
TMEM260-203ENST00000539559 ZC3H4Q9UPT8 1303 aaKnown RBP22.74■■□□□ 1.23
TMEM260-203ENST00000539559 RASSF10A6NK89 507 aa22.73■■□□□ 1.23
TMEM260-203ENST00000539559 NTSR2O95665 410 aa22.73■■□□□ 1.23
TMEM260-203ENST00000539559 TUBB4BP68371 445 aa22.73■■□□□ 1.23
TMEM260-203ENST00000539559 TSR1Q2NL82 804 aaKnown RBP22.73■■□□□ 1.23
TMEM260-203ENST00000539559 FKBP15Q5T1M5 1219 aa22.73■■□□□ 1.23
TMEM260-203ENST00000539559 PTF1AQ7RTS3 328 aa22.73■■□□□ 1.23
TMEM260-203ENST00000539559 PCMTD1Q96MG8 357 aaPredicted RBP22.73■■□□□ 1.23
TMEM260-203ENST00000539559 PSMB7Q99436 277 aa22.73■■□□□ 1.23
TMEM260-203ENST00000539559 JADE2Q9NQC1 790 aa22.73■■□□□ 1.23
TMEM260-203ENST00000539559 CNTNAP4Q9C0A0 1308 aa22.73■■□□□ 1.23
TMEM260-203ENST00000539559 PLEKP08567 350 aaPredicted RBP22.73■■□□□ 1.23
TMEM260-203ENST00000539559 TRIM21P19474 475 aaKnown RBP22.73■■□□□ 1.23
TMEM260-203ENST00000539559 KCNQ4P56696 695 aa22.73■■□□□ 1.23
TMEM260-203ENST00000539559 STIM1Q13586 685 aa22.73■■□□□ 1.23
TMEM260-203ENST00000539559 C4orf32Q8N8J7 132 aa22.73■■□□□ 1.23
TMEM260-203ENST00000539559 ACBD3Q9H3P7 528 aa22.73■■□□□ 1.23
TMEM260-203ENST00000539559 RMND1Q9NWS8 449 aa22.73■■□□□ 1.23
TMEM260-203ENST00000539559 CAPN11Q9UMQ6 739 aa22.73■■□□□ 1.23
TMEM260-203ENST00000539559 JAG2Q9Y219 1238 aa22.73■■□□□ 1.23
TMEM260-203ENST00000539559 COL1A1P02452 1464 aaPredicted RBP22.72■■□□□ 1.23
TMEM260-203ENST00000539559 CCDC152Q4G0S7 254 aa22.72■■□□□ 1.23
TMEM260-203ENST00000539559 GOLGA6L1Q8N7Z2 621 aa22.72■■□□□ 1.23
TMEM260-203ENST00000539559 EHD4Q9H223 541 aa22.72■■□□□ 1.23
TMEM260-203ENST00000539559 DISC1Q9NRI5 854 aa22.72■■□□□ 1.23
TMEM260-203ENST00000539559 SMARCAL1Q9NZC9 954 aa22.72■■□□□ 1.23
TMEM260-203ENST00000539559 ARAP2Q8WZ64 1704 aa22.72■■□□□ 1.23
TMEM260-203ENST00000539559 DUOX1Q9NRD9 1551 aa22.72■■□□□ 1.23
TMEM260-203ENST00000539559 TYW1BQ6NUM6 668 aa22.72■■□□□ 1.23
TMEM260-203ENST00000539559 CERS3Q8IU89 383 aa22.72■■□□□ 1.23
TMEM260-203ENST00000539559 HDAC7Q8WUI4 952 aa22.72■■□□□ 1.23
TMEM260-203ENST00000539559 GJD4Q96KN9 370 aaPredicted RBP22.72■■□□□ 1.23
TMEM260-203ENST00000539559 NHEJ1Q9H9Q4 299 aaPredicted RBP22.72■■□□□ 1.23
TMEM260-203ENST00000539559 ERCC3P19447 782 aa22.71■■□□□ 1.23
TMEM260-203ENST00000539559 PAPD7Q5XG87 772 aaKnown RBP22.71■■□□□ 1.23
TMEM260-203ENST00000539559 COG1Q8WTW3 980 aa22.71■■□□□ 1.23
TMEM260-203ENST00000539559 SELENOOQ9BVL4 669 aa22.71■■□□□ 1.23
TMEM260-203ENST00000539559 LRP5O75197 1615 aa22.71■■□□□ 1.23
TMEM260-203ENST00000539559 IDEP14735 1019 aa22.71■■□□□ 1.23
TMEM260-203ENST00000539559 MATR3P43243 847 aaKnown RBP eCLIP22.71■■□□□ 1.23
TMEM260-203ENST00000539559 HPS3Q969F9 1004 aa22.71■■□□□ 1.23
TMEM260-203ENST00000539559 THSD7AQ9UPZ6 1657 aa22.7■■□□□ 1.23
TMEM260-203ENST00000539559 AGPSO00116 658 aa22.7■■□□□ 1.22
TMEM260-203ENST00000539559 KLRC4O43908 158 aa22.7■■□□□ 1.22
TMEM260-203ENST00000539559 RPS6KA5O75582 802 aa22.7■■□□□ 1.22
TMEM260-203ENST00000539559 PACS2Q86VP3 889 aa22.7■■□□□ 1.22
TMEM260-203ENST00000539559 STAG2Q8N3U4 1231 aa22.7■■□□□ 1.22
TMEM260-203ENST00000539559 TUBGCP2Q9BSJ2 902 aa22.7■■□□□ 1.22
TMEM260-203ENST00000539559 PDS5AQ29RF7 1337 aaKnown RBP22.7■■□□□ 1.22
TMEM260-203ENST00000539559 PFKFB3Q16875 520 aaPredicted RBP22.7■■□□□ 1.22
TMEM260-203ENST00000539559 MAGEC2Q9UBF1 373 aaPredicted RBP22.7■■□□□ 1.22
TMEM260-203ENST00000539559 AARSP49588 968 aaKnown RBP eCLIP22.69■■□□□ 1.22
TMEM260-203ENST00000539559 RC3H1Q5TC82 1133 aaKnown RBP22.69■■□□□ 1.22
TMEM260-203ENST00000539559 CSGALNACT2Q8N6G5 542 aa22.69■■□□□ 1.22
TMEM260-203ENST00000539559 RRP36Q96EU6 259 aaKnown RBP22.69■■□□□ 1.22
TMEM260-203ENST00000539559 EHD2Q9NZN4 543 aa22.69■■□□□ 1.22
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms