RNA–Protein interactions for RNA: ENST00000539522.2

CCDC42-202, Transcript of coiled-coil domain containing 42, humanhuman

TSL 1 (best) BASIC

Gene CCDC42, Length 1,087 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42-202ENST00000539522 ZNF236Q9UL36 1845 aa15.14■□□□□ 0.01
CCDC42-202ENST00000539522 CNTNAP5Q8WYK1 1306 aa15.14■□□□□ 0.01
CCDC42-202ENST00000539522 ECM2O94769 699 aaPredicted RBP15.13■□□□□ 0.01
CCDC42-202ENST00000539522 CTDNEP1O95476 244 aa15.13■□□□□ 0.01
CCDC42-202ENST00000539522 RCAN1P53805 252 aa15.13■□□□□ 0.01
CCDC42-202ENST00000539522 CCT2P78371 535 aaKnown RBP15.13■□□□□ 0.01
CCDC42-202ENST00000539522 SP3Q02447 781 aa15.13■□□□□ 0.01
CCDC42-202ENST00000539522 SCRN1Q12765 414 aa15.13■□□□□ 0.01
CCDC42-202ENST00000539522 NOL8Q76FK4 1167 aaKnown RBP15.13■□□□□ 0.01
CCDC42-202ENST00000539522 GPRC5AQ8NFJ5 357 aa15.13■□□□□ 0.01
CCDC42-202ENST00000539522 ZNF274Q96GC6 653 aaPredicted RBP15.13■□□□□ 0.01
CCDC42-202ENST00000539522 hCG_1642624A0A1W2PR95 340 aa15.12■□□□□ 0.01
CCDC42-202ENST00000539522 GOLGA8AA7E2F4 631 aa15.12■□□□□ 0.01
CCDC42-202ENST00000539522 OPLAHO14841 1288 aa15.12■□□□□ 0.01
CCDC42-202ENST00000539522 CALM1P0DP23 149 aa15.12■□□□□ 0.01
CCDC42-202ENST00000539522 CALM2P0DP24 149 aa15.12■□□□□ 0.01
CCDC42-202ENST00000539522 CALM3P0DP25 149 aa15.12■□□□□ 0.01
CCDC42-202ENST00000539522 RABEP1Q15276 862 aa15.12■□□□□ 0.01
CCDC42-202ENST00000539522 RTN1Q16799 776 aa15.12■□□□□ 0.01
CCDC42-202ENST00000539522 QRICH1Q2TAL8 776 aa15.12■□□□□ 0.01
CCDC42-202ENST00000539522 CCDC174Q6PII3 467 aa15.12■□□□□ 0.01
CCDC42-202ENST00000539522 MB21D1Q8N884 522 aa15.12■□□□□ 0.01
CCDC42-202ENST00000539522 PIGSQ96S52 555 aa15.12■□□□□ 0.01
CCDC42-202ENST00000539522 BEGAINQ9BUH8 593 aa15.12■□□□□ 0.01
CCDC42-202ENST00000539522 SPZ1Q9BXG8 430 aa15.12■□□□□ 0.01
CCDC42-202ENST00000539522 VAT1LQ9HCJ6 419 aa15.12■□□□□ 0.01
CCDC42-202ENST00000539522 ISY1Q9ULR0 285 aaKnown RBP15.12■□□□□ 0.01
CCDC42-202ENST00000539522 PFKFB2O60825 505 aa15.11■□□□□ 0.01
CCDC42-202ENST00000539522 FKTNO75072 461 aa15.11■□□□□ 0.01
CCDC42-202ENST00000539522 PPFIA3O75145 1194 aa15.11■□□□□ 0.01
CCDC42-202ENST00000539522 CTCFP49711 727 aaPredicted RBP15.11■□□□□ 0.01
CCDC42-202ENST00000539522 METAP2P50579 478 aaKnown RBP eCLIP15.11■□□□□ 0.01
CCDC42-202ENST00000539522 FGD1P98174 961 aa15.11■□□□□ 0.01
CCDC42-202ENST00000539522 IKQ13123 557 aaPredicted RBP15.11■□□□□ 0.01
CCDC42-202ENST00000539522 STK3Q13188 491 aa15.11■□□□□ 0.01
CCDC42-202ENST00000539522 BECN1Q14457 450 aa15.11■□□□□ 0.01
CCDC42-202ENST00000539522 CDC37Q16543 378 aaPredicted RBP15.11■□□□□ 0.01
CCDC42-202ENST00000539522 MUM1L1Q5H9M0 696 aa15.11■□□□□ 0.01
CCDC42-202ENST00000539522 RIOX2Q8IUF8 465 aa15.11■□□□□ 0.01
CCDC42-202ENST00000539522 CPXCR1Q8N123 301 aa15.11■□□□□ 0.01
CCDC42-202ENST00000539522 CCDC82Q8N4S0 544 aa15.11■□□□□ 0.01
CCDC42-202ENST00000539522 NECAB1Q8N987 351 aa15.11■□□□□ 0.01
CCDC42-202ENST00000539522 CTCFLQ8NI51 663 aaPredicted RBP15.11■□□□□ 0.01
CCDC42-202ENST00000539522 GTF3C2Q8WUA4 911 aaPredicted RBP15.11■□□□□ 0.01
CCDC42-202ENST00000539522 CLEC4DQ8WXI8 215 aa15.11■□□□□ 0.01
CCDC42-202ENST00000539522 GJD2Q9UKL4 321 aa15.11■□□□□ 0.01
CCDC42-202ENST00000539522 PLXNA1Q9UIW2 1896 aa15.11■□□□□ 0.01
CCDC42-202ENST00000539522 ICAM1P05362 532 aa15.1■□□□□ 0.01
CCDC42-202ENST00000539522 ERCC3P19447 782 aa15.1■□□□□ 0.01
CCDC42-202ENST00000539522 SMARCA1P28370 1054 aa15.1■□□□□ 0.01
CCDC42-202ENST00000539522 STAT3P40763 770 aa15.1■□□□□ 0.01
CCDC42-202ENST00000539522 OAZ1P54368 228 aa15.1■□□□□ 0.01
CCDC42-202ENST00000539522 PKN1Q16512 942 aa15.1■□□□□ 0.01
CCDC42-202ENST00000539522 SNRNP48Q6IEG0 339 aaKnown RBP15.1■□□□□ 0.01
CCDC42-202ENST00000539522 TYW1BQ6NUM6 668 aa15.1■□□□□ 0.01
CCDC42-202ENST00000539522 USP6NLQ92738 828 aa15.1■□□□□ 0.01
CCDC42-202ENST00000539522 DAXXQ9UER7 740 aaPredicted RBP15.1■□□□□ 0.01
CCDC42-202ENST00000539522 GABRQQ9UN88 632 aa15.1■□□□□ 0.01
CCDC42-202ENST00000539522 BRCA2P51587 3418 aa15.1■□□□□ 0.01
CCDC42-202ENST00000539522 LRRC37A2A6NM11 1700 aa15.09■□□□□ 0.01
CCDC42-202ENST00000539522 ADAMTS3O15072 1205 aa15.09■□□□□ 0.01
CCDC42-202ENST00000539522 ZBED4O75132 1171 aa15.09■□□□□ 0.01
CCDC42-202ENST00000539522 KIF5BP33176 963 aa15.09■□□□□ 0.01
CCDC42-202ENST00000539522 PSMC4P43686 418 aa15.09■□□□□ 0.01
CCDC42-202ENST00000539522 PLS1Q14651 629 aa15.09■□□□□ 0.01
CCDC42-202ENST00000539522 MORN1Q5T089 497 aa15.09■□□□□ 0.01
CCDC42-202ENST00000539522 DHX30Q7L2E3 1194 aaKnown RBP eCLIP15.09■□□□□ 0.01
CCDC42-202ENST00000539522 GPR142Q7Z601 462 aa15.09■□□□□ 0.01
CCDC42-202ENST00000539522 SHCBP1Q8NEM2 672 aa15.09■□□□□ 0.01
CCDC42-202ENST00000539522 PIBF1Q8WXW3 757 aa15.09■□□□□ 0.01
CCDC42-202ENST00000539522 TBC1D5Q92609 795 aa15.09■□□□□ 0.01
CCDC42-202ENST00000539522 PHKBQ93100 1093 aa15.09■□□□□ 0.01
CCDC42-202ENST00000539522 GTF3C6Q969F1 213 aa15.09■□□□□ 0.01
CCDC42-202ENST00000539522 FGD4Q96M96 766 aa15.09■□□□□ 0.01
CCDC42-202ENST00000539522 TEX13BQ9BXU2 312 aa15.09■□□□□ 0.01
CCDC42-202ENST00000539522 RBM28Q9NW13 759 aaKnown RBP15.09■□□□□ 0.01
CCDC42-202ENST00000539522 NAP1L2Q9ULW6 460 aaPredicted RBP15.09■□□□□ 0.01
CCDC42-202ENST00000539522 NFIBO00712 420 aa15.08■□□□□ 0
CCDC42-202ENST00000539522 ZBTB5O15062 677 aa15.08■□□□□ 0
CCDC42-202ENST00000539522 IGHA2P01877 340 aa15.08■□□□□ 0
CCDC42-202ENST00000539522 FDX1P10109 184 aa15.08■□□□□ 0
CCDC42-202ENST00000539522 ANKRD1Q15327 319 aa15.08■□□□□ 0
CCDC42-202ENST00000539522 SYNE3Q6ZMZ3 975 aa15.08■□□□□ 0
CCDC42-202ENST00000539522 OTOP1Q7RTM1 612 aa15.08■□□□□ 0
CCDC42-202ENST00000539522 HOMER1Q86YM7 354 aa15.08■□□□□ 0
CCDC42-202ENST00000539522 SNX21Q969T3 373 aa15.08■□□□□ 0
CCDC42-202ENST00000539522 LIMCH1Q9UPQ0 1083 aa15.08■□□□□ 0
CCDC42-202ENST00000539522 ASTN1O14525 1302 aa15.08■□□□□ 0
CCDC42-202ENST00000539522 FDPSP14324 419 aaKnown RBP15.07■□□□□ 0
CCDC42-202ENST00000539522 IFNAR1P17181 557 aa15.07■□□□□ 0
CCDC42-202ENST00000539522 GRB14Q14449 540 aa15.07■□□□□ 0
CCDC42-202ENST00000539522 COA7Q96BR5 231 aa15.07■□□□□ 0
CCDC42-202ENST00000539522 PURBQ96QR8 312 aaKnown RBP15.07■□□□□ 0
CCDC42-202ENST00000539522 LZTS2Q9BRK4 669 aa15.07■□□□□ 0
CCDC42-202ENST00000539522 HOMER2Q9NSB8 354 aa15.07■□□□□ 0
CCDC42-202ENST00000539522 CCPG1Q9ULG6 757 aa15.07■□□□□ 0
CCDC42-202ENST00000539522 V9GY48 417 aaPredicted RBP15.07■□□□□ 0
CCDC42-202ENST00000539522 DNAJC25-GNG10A0A024R161 153 aa15.06■□□□□ 0
CCDC42-202ENST00000539522 PNMA6FA0A0J9YX94 578 aa15.06■□□□□ 0
CCDC42-202ENST00000539522 COBLO75128 1261 aa15.06■□□□□ 0
Retrieved 100 of 20,778 RNA–protein pairs in 11 ms