RNA–Protein interactions for RNA: ENST00000537178.5

CLIP1-209, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLIP1, Length 5,229 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-209ENST00000537178 DMTNQ08495 405 aa11.68□□□□□ -0.54
CLIP1-209ENST00000537178 NXNQ6DKJ4 435 aa11.68□□□□□ -0.54
CLIP1-209ENST00000537178 CCDC13Q8IYE1 715 aa11.68□□□□□ -0.54
CLIP1-209ENST00000537178 BBOF1Q8ND07 529 aa11.68□□□□□ -0.54
CLIP1-209ENST00000537178 CFAP61Q8NHU2 1237 aa11.68□□□□□ -0.54
CLIP1-209ENST00000537178 DEPTORQ8TB45 409 aa11.68□□□□□ -0.54
CLIP1-209ENST00000537178 GOLGA5Q8TBA6 731 aa11.68□□□□□ -0.54
CLIP1-209ENST00000537178 RNMTO43148 476 aaKnown RBP11.68□□□□□ -0.54
CLIP1-209ENST00000537178 OPHN1O60890 802 aa11.68□□□□□ -0.54
CLIP1-209ENST00000537178 HOXB7P09629 217 aa11.68□□□□□ -0.54
CLIP1-209ENST00000537178 SLC8A1P32418 973 aa11.68□□□□□ -0.54
CLIP1-209ENST00000537178 KRT81Q14533 505 aa11.68□□□□□ -0.54
CLIP1-209ENST00000537178 JADE1Q6IE81 842 aa11.68□□□□□ -0.54
CLIP1-209ENST00000537178 STAG1Q8WVM7 1258 aa11.68□□□□□ -0.54
CLIP1-209ENST00000537178 METTL22Q9BUU2 404 aaPredicted RBP11.68□□□□□ -0.54
CLIP1-209ENST00000537178 EFCC1Q9HA90 598 aa11.68□□□□□ -0.54
CLIP1-209ENST00000537178 LARSQ9P2J5 1176 aaKnown RBP11.68□□□□□ -0.54
CLIP1-209ENST00000537178 GJA3Q9Y6H8 435 aa11.68□□□□□ -0.54
CLIP1-209ENST00000537178 ZBTB7BO15156 539 aaPredicted RBP11.67□□□□□ -0.54
CLIP1-209ENST00000537178 GNPATO15228 680 aa11.67□□□□□ -0.54
CLIP1-209ENST00000537178 ZYXQ15942 572 aaKnown RBP11.67□□□□□ -0.54
CLIP1-209ENST00000537178 CAPN7Q9Y6W3 813 aa11.67□□□□□ -0.54
CLIP1-209ENST00000537178 TNRQ92752 1358 aa11.67□□□□□ -0.54
CLIP1-209ENST00000537178 COG7P83436 770 aa11.67□□□□□ -0.54
CLIP1-209ENST00000537178 RAD51AP2Q09MP3 1159 aa11.67□□□□□ -0.54
CLIP1-209ENST00000537178 LPIN2Q92539 896 aa11.67□□□□□ -0.54
CLIP1-209ENST00000537178 GOLGA8CPA6NN73 597 aa11.67□□□□□ -0.54
CLIP1-209ENST00000537178 SPECC1L-ADORA2AF8WAN1 911 aa11.67□□□□□ -0.54
CLIP1-209ENST00000537178 KCNK3O14649 394 aa11.67□□□□□ -0.54
CLIP1-209ENST00000537178 HSP90AA5PQ58FG0 334 aa11.67□□□□□ -0.54
CLIP1-209ENST00000537178 MYOCDQ8IZQ8 938 aa11.67□□□□□ -0.54
CLIP1-209ENST00000537178 C8orf37Q96NL8 207 aa11.67□□□□□ -0.54
CLIP1-209ENST00000537178 ATP8A2Q9NTI2 1148 aa11.67□□□□□ -0.54
CLIP1-209ENST00000537178 SPDYE16A6NNV3 312 aaPredicted RBP11.67□□□□□ -0.54
CLIP1-209ENST00000537178 H0YCG3 227 aa11.67□□□□□ -0.54
CLIP1-209ENST00000537178 GAS7O60861 476 aa11.67□□□□□ -0.54
CLIP1-209ENST00000537178 BAG2O95816 211 aa11.67□□□□□ -0.54
CLIP1-209ENST00000537178 GUCY2FP51841 1108 aa11.67□□□□□ -0.54
CLIP1-209ENST00000537178 APBA1Q02410 837 aa11.67□□□□□ -0.54
CLIP1-209ENST00000537178 SF3A3Q12874 501 aaKnown RBP eCLIP11.67□□□□□ -0.54
CLIP1-209ENST00000537178 SPDYE2Q495Y8 402 aa11.67□□□□□ -0.54
CLIP1-209ENST00000537178 LSM14BQ9BX40 385 aaKnown RBP11.67□□□□□ -0.54
CLIP1-209ENST00000537178 HAUS4Q9H6D7 363 aa11.67□□□□□ -0.54
CLIP1-209ENST00000537178 ARMCX3Q9UH62 379 aaPredicted RBP11.67□□□□□ -0.54
CLIP1-209ENST00000537178 GPC4O75487 556 aa11.66□□□□□ -0.54
CLIP1-209ENST00000537178 POLR2BP30876 1174 aaKnown RBP11.66□□□□□ -0.54
CLIP1-209ENST00000537178 GCKP35557 465 aa11.66□□□□□ -0.54
CLIP1-209ENST00000537178 XPO4Q9C0E2 1151 aaKnown RBP11.66□□□□□ -0.54
CLIP1-209ENST00000537178 HESX1Q9UBX0 185 aa11.66□□□□□ -0.54
CLIP1-209ENST00000537178 CAPN9O14815 690 aa11.66□□□□□ -0.54
CLIP1-209ENST00000537178 INPP1P49441 399 aa11.66□□□□□ -0.54
CLIP1-209ENST00000537178 KRT24Q2M2I5 525 aa11.66□□□□□ -0.54
CLIP1-209ENST00000537178 GNPTABQ3T906 1256 aa11.66□□□□□ -0.54
CLIP1-209ENST00000537178 TRMT44Q8IYL2 757 aaKnown RBP11.66□□□□□ -0.54
CLIP1-209ENST00000537178 GLG1Q92896 1179 aa11.66□□□□□ -0.54
CLIP1-209ENST00000537178 GOLGA8QA0A0J9YX86 632 aa11.66□□□□□ -0.54
CLIP1-209ENST00000537178 GOLGA8OA6NCC3 632 aa11.66□□□□□ -0.54
CLIP1-209ENST00000537178 UBAP1LF5GYI3 381 aa11.66□□□□□ -0.54
CLIP1-209ENST00000537178 GOLGA8NF8WBI6 632 aa11.66□□□□□ -0.54
CLIP1-209ENST00000537178 TRIM37O94972 964 aa11.66□□□□□ -0.54
CLIP1-209ENST00000537178 OATP04181 439 aa11.66□□□□□ -0.54
CLIP1-209ENST00000537178 ABCB4P21439 1286 aa11.66□□□□□ -0.54
CLIP1-209ENST00000537178 CHURC1Q8WUH1 139 aa11.66□□□□□ -0.54
CLIP1-209ENST00000537178 NLRP7Q8WX94 980 aa11.66□□□□□ -0.54
CLIP1-209ENST00000537178 PHKBQ93100 1093 aa11.66□□□□□ -0.54
CLIP1-209ENST00000537178 EYA1Q99502 592 aa11.66□□□□□ -0.54
CLIP1-209ENST00000537178 C1orf112Q9NSG2 853 aa11.66□□□□□ -0.54
CLIP1-209ENST00000537178 H2AFZP0C0S5 128 aa11.66□□□□□ -0.54
CLIP1-209ENST00000537178 PPARDQ03181 441 aa11.66□□□□□ -0.54
CLIP1-209ENST00000537178 H2AFVQ71UI9 128 aa11.66□□□□□ -0.54
CLIP1-209ENST00000537178 ZBTB8OSQ8IWT0 167 aa11.66□□□□□ -0.54
CLIP1-209ENST00000537178 TBC1D22AQ8WUA7 517 aa11.66□□□□□ -0.54
CLIP1-209ENST00000537178 FAF1Q9UNN5 650 aaPredicted RBP11.66□□□□□ -0.54
CLIP1-209ENST00000537178 RIPOR2Q9Y4F9 1068 aa11.66□□□□□ -0.54
CLIP1-209ENST00000537178 THAP12O43422 761 aa11.65□□□□□ -0.54
CLIP1-209ENST00000537178 LUC7L3O95232 432 aaKnown RBP11.65□□□□□ -0.54
CLIP1-209ENST00000537178 TPH2Q8IWU9 490 aa11.65□□□□□ -0.54
CLIP1-209ENST00000537178 RDH13Q8NBN7 331 aa11.65□□□□□ -0.54
CLIP1-209ENST00000537178 CDKL2Q92772 493 aa11.65□□□□□ -0.54
CLIP1-209ENST00000537178 AATFQ9NY61 560 aaKnown RBP eCLIP11.65□□□□□ -0.54
CLIP1-209ENST00000537178 ABCC4O15439 1325 aa11.65□□□□□ -0.54
CLIP1-209ENST00000537178 SART1O43290 800 aaKnown RBP11.65□□□□□ -0.54
CLIP1-209ENST00000537178 EVI5O60447 810 aa11.65□□□□□ -0.54
CLIP1-209ENST00000537178 TTC4O95801 387 aa11.65□□□□□ -0.54
CLIP1-209ENST00000537178 ADALQ6DHV7 355 aa11.65□□□□□ -0.54
CLIP1-209ENST00000537178 SCYL2Q6P3W7 929 aa11.65□□□□□ -0.54
CLIP1-209ENST00000537178 GDAP1L1Q96MZ0 367 aa11.65□□□□□ -0.54
CLIP1-209ENST00000537178 TM6SF1Q9BZW5 370 aa11.65□□□□□ -0.54
CLIP1-209ENST00000537178 METTL14Q9HCE5 456 aaKnown RBP11.65□□□□□ -0.54
CLIP1-209ENST00000537178 MED4Q9NPJ6 270 aa11.65□□□□□ -0.54
CLIP1-209ENST00000537178 RTEL1Q9NZ71 1219 aa11.65□□□□□ -0.54
CLIP1-209ENST00000537178 XRN1Q8IZH2 1706 aaKnown RBP11.65□□□□□ -0.54
CLIP1-209ENST00000537178 GARSP41250 739 aaKnown RBP11.65□□□□□ -0.54
CLIP1-209ENST00000537178 LRMPQ12912 555 aa11.65□□□□□ -0.54
CLIP1-209ENST00000537178 USH1GQ495M9 461 aa11.65□□□□□ -0.54
CLIP1-209ENST00000537178 RASIP1Q5U651 963 aa11.65□□□□□ -0.54
CLIP1-209ENST00000537178 GPIHBP1Q8IV16 184 aa11.65□□□□□ -0.54
CLIP1-209ENST00000537178 PDZD8Q8NEN9 1154 aa11.65□□□□□ -0.54
CLIP1-209ENST00000537178 STAMQ92783 540 aa11.65□□□□□ -0.54
CLIP1-209ENST00000537178 SCYL1Q96KG9 808 aa11.65□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms