RNA–Protein interactions for RNA: ENST00000535607.5

USP28-202, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 683 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-202ENST00000535607 U2AF1Q01081 240 aaKnown RBP eCLIP7.83□□□□□ -1.16
USP28-202ENST00000535607 RPL6Q02878 288 aaKnown RBP7.83□□□□□ -1.16
USP28-202ENST00000535607 GRIK4Q16099 956 aa7.83□□□□□ -1.16
USP28-202ENST00000535607 BNC2Q6ZN30 1099 aaPredicted RBP7.83□□□□□ -1.16
USP28-202ENST00000535607 FAM196AQ6ZSG2 479 aa7.83□□□□□ -1.16
USP28-202ENST00000535607 C12orf50Q8NA57 414 aaPredicted RBP7.83□□□□□ -1.16
USP28-202ENST00000535607 CPLX3Q8WVH0 158 aa7.83□□□□□ -1.16
USP28-202ENST00000535607 PIBF1Q8WXW3 757 aa7.83□□□□□ -1.16
USP28-202ENST00000535607 ORAI2Q96SN7 254 aa7.83□□□□□ -1.16
USP28-202ENST00000535607 TANGO6Q9C0B7 1094 aa7.83□□□□□ -1.16
USP28-202ENST00000535607 LNPKQ9C0E8 428 aa7.83□□□□□ -1.16
USP28-202ENST00000535607 KCNK4Q9NYG8 393 aa7.83□□□□□ -1.16
USP28-202ENST00000535607 GAS2O43903 313 aaKnown RBP7.82□□□□□ -1.16
USP28-202ENST00000535607 PHLPP1O60346 1717 aa7.82□□□□□ -1.16
USP28-202ENST00000535607 AOC2O75106 756 aa7.82□□□□□ -1.16
USP28-202ENST00000535607 ECEL1O95672 775 aa7.82□□□□□ -1.16
USP28-202ENST00000535607 F13A1P00488 732 aa7.82□□□□□ -1.16
USP28-202ENST00000535607 SSBP05455 408 aaKnown RBP eCLIP7.82□□□□□ -1.16
USP28-202ENST00000535607 CDK11BP21127 795 aaKnown RBP7.82□□□□□ -1.16
USP28-202ENST00000535607 COL9A2Q14055 689 aaPredicted RBP7.82□□□□□ -1.16
USP28-202ENST00000535607 SYCP1Q15431 976 aa7.82□□□□□ -1.16
USP28-202ENST00000535607 SEZ6Q53EL9 994 aa7.82□□□□□ -1.16
USP28-202ENST00000535607 WIPI1Q5MNZ9 446 aaPredicted RBP7.82□□□□□ -1.16
USP28-202ENST00000535607 ANKRD34AQ69YU3 496 aa7.82□□□□□ -1.16
USP28-202ENST00000535607 CREBRFQ8IUR6 639 aa7.82□□□□□ -1.16
USP28-202ENST00000535607 SLC43A3Q8NBI5 491 aa7.82□□□□□ -1.16
USP28-202ENST00000535607 SREK1Q8WXA9 508 aaKnown RBP7.82□□□□□ -1.16
USP28-202ENST00000535607 NRSN2Q9GZP1 204 aa7.82□□□□□ -1.16
USP28-202ENST00000535607 AKTIPQ9H8T0 292 aa7.82□□□□□ -1.16
USP28-202ENST00000535607 PIDD1Q9HB75 910 aa7.82□□□□□ -1.16
USP28-202ENST00000535607 NOB1Q9ULX3 412 aaKnown RBP7.82□□□□□ -1.16
USP28-202ENST00000535607 RRP7AQ9Y3A4 280 aaKnown RBP7.82□□□□□ -1.16
USP28-202ENST00000535607 SNCAIPQ9Y6H5 919 aa7.82□□□□□ -1.16
USP28-202ENST00000535607 COL3A1P02461 1466 aaPredicted RBP7.81□□□□□ -1.16
USP28-202ENST00000535607 GLB1P16278 677 aa7.81□□□□□ -1.16
USP28-202ENST00000535607 GJA8P48165 433 aa7.81□□□□□ -1.16
USP28-202ENST00000535607 ZNF165P49910 485 aa7.81□□□□□ -1.16
USP28-202ENST00000535607 ID3Q02535 119 aa7.81□□□□□ -1.16
USP28-202ENST00000535607 EXOSC9Q06265 439 aaKnown RBP7.81□□□□□ -1.16
USP28-202ENST00000535607 GABPB1Q06547 395 aaPredicted RBP7.81□□□□□ -1.16
USP28-202ENST00000535607 PDE4BQ07343 736 aa7.81□□□□□ -1.16
USP28-202ENST00000535607 KIF4BQ2VIQ3 1234 aa7.81□□□□□ -1.16
USP28-202ENST00000535607 KRT28Q7Z3Y7 464 aa7.81□□□□□ -1.16
USP28-202ENST00000535607 NME9Q86XW9 330 aa7.81□□□□□ -1.16
USP28-202ENST00000535607 SUGP2Q8IX01 1082 aaKnown RBP eCLIP7.81□□□□□ -1.16
USP28-202ENST00000535607 TMEM57Q8N5G2 664 aa7.81□□□□□ -1.16
USP28-202ENST00000535607 KCNH5Q8NCM2 988 aa7.81□□□□□ -1.16
USP28-202ENST00000535607 SSH1Q8WYL5 1049 aa7.81□□□□□ -1.16
USP28-202ENST00000535607 BUD13Q9BRD0 619 aaKnown RBP eCLIP7.81□□□□□ -1.16
USP28-202ENST00000535607 TINF2Q9BSI4 451 aa7.81□□□□□ -1.16
USP28-202ENST00000535607 YIPF2Q9BWQ6 316 aa7.81□□□□□ -1.16
USP28-202ENST00000535607 API5Q9BZZ5 524 aaKnown RBP7.81□□□□□ -1.16
USP28-202ENST00000535607 ATXN3LQ9H3M9 355 aa7.81□□□□□ -1.16
USP28-202ENST00000535607 UBP1Q9NZI7 540 aa7.81□□□□□ -1.16
USP28-202ENST00000535607 ATP6V1DQ9Y5K8 247 aa7.81□□□□□ -1.16
USP28-202ENST00000535607 LTN1O94822 1766 aa7.81□□□□□ -1.16
USP28-202ENST00000535607 PNPLA6Q8IY17 1366 aa7.81□□□□□ -1.16
USP28-202ENST00000535607 SPATA31A3Q5VYP0 1347 aa7.8□□□□□ -1.16
USP28-202ENST00000535607 FAM208AQ9UK61 1670 aaKnown RBP7.8□□□□□ -1.16
USP28-202ENST00000535607 PRAMEF27A3QJZ7 478 aa7.8□□□□□ -1.16
USP28-202ENST00000535607 MEGF11A6BM72 1044 aa7.8□□□□□ -1.16
USP28-202ENST00000535607 ATP2B1P20020 1258 aa7.8□□□□□ -1.16
USP28-202ENST00000535607 MTHFSP49914 203 aa7.8□□□□□ -1.16
USP28-202ENST00000535607 NOLC1Q14978 699 aaKnown RBP eCLIP7.8□□□□□ -1.16
USP28-202ENST00000535607 RASIP1Q5U651 963 aa7.8□□□□□ -1.16
USP28-202ENST00000535607 FBXW10Q5XX13 1052 aa7.8□□□□□ -1.16
USP28-202ENST00000535607 SHISA2Q6UWI4 295 aa7.8□□□□□ -1.16
USP28-202ENST00000535607 ILDR2Q71H61 639 aa7.8□□□□□ -1.16
USP28-202ENST00000535607 DYMQ7RTS9 669 aa7.8□□□□□ -1.16
USP28-202ENST00000535607 ZC3HAV1Q7Z2W4 902 aaKnown RBP7.8□□□□□ -1.16
USP28-202ENST00000535607 GAL3ST3Q96A11 431 aa7.8□□□□□ -1.16
USP28-202ENST00000535607 LENG1Q96BZ8 264 aaPredicted RBP7.8□□□□□ -1.16
USP28-202ENST00000535607 INTS4Q96HW7 963 aaKnown RBP7.8□□□□□ -1.16
USP28-202ENST00000535607 SEC16BQ96JE7 1060 aa7.8□□□□□ -1.16
USP28-202ENST00000535607 DRC1Q96MC2 740 aa7.8□□□□□ -1.16
USP28-202ENST00000535607 FERD3LQ96RJ6 166 aa7.8□□□□□ -1.16
USP28-202ENST00000535607 KIF2CQ99661 725 aa7.8□□□□□ -1.16
USP28-202ENST00000535607 WDR18Q9BV38 432 aa7.8□□□□□ -1.16
USP28-202ENST00000535607 TSPYL1Q9H0U9 437 aa7.8□□□□□ -1.16
USP28-202ENST00000535607 SSU72Q9NP77 194 aaKnown RBP7.8□□□□□ -1.16
USP28-202ENST00000535607 KCNQ5Q9NR82 932 aa7.8□□□□□ -1.16
USP28-202ENST00000535607 FLT4P35916 1363 aa7.8□□□□□ -1.16
USP28-202ENST00000535607 A0A0U1RQG5 324 aaPredicted RBP7.79□□□□□ -1.16
USP28-202ENST00000535607 SYCE3A1L190 88 aa7.79□□□□□ -1.16
USP28-202ENST00000535607 DCDC2CA8MYV0 355 aa7.79□□□□□ -1.16
USP28-202ENST00000535607 GREM1O60565 184 aa7.79□□□□□ -1.16
USP28-202ENST00000535607 CILPO75339 1184 aa7.79□□□□□ -1.16
USP28-202ENST00000535607 WISP1O95388 367 aa7.79□□□□□ -1.16
USP28-202ENST00000535607 ZSCAN20P17040 1043 aaPredicted RBP7.79□□□□□ -1.16
USP28-202ENST00000535607 TMPOP42166 694 aaKnown RBP7.79□□□□□ -1.16
USP28-202ENST00000535607 USP11P51784 963 aa7.79□□□□□ -1.16
USP28-202ENST00000535607 ETF1P62495 437 aaKnown RBP7.79□□□□□ -1.16
USP28-202ENST00000535607 LMOD3Q0VAK6 560 aa7.79□□□□□ -1.16
USP28-202ENST00000535607 CDC37L1Q7L3B6 337 aa7.79□□□□□ -1.16
USP28-202ENST00000535607 TMEM130Q8N3G9 435 aa7.79□□□□□ -1.16
USP28-202ENST00000535607 RASGRP4Q8TDF6 673 aa7.79□□□□□ -1.16
USP28-202ENST00000535607 EAF1Q96JC9 268 aaPredicted RBP7.79□□□□□ -1.16
USP28-202ENST00000535607 TMPRSS13Q9BYE2 586 aa7.79□□□□□ -1.16
USP28-202ENST00000535607 SPTLC3Q9NUV7 552 aa7.79□□□□□ -1.16
USP28-202ENST00000535607 OGFRQ9NZT2 677 aa7.79□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms