RNA–Protein interactions for RNA: ENST00000532725.1

CPSF1-209, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 597 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-209ENST00000532725 ASPRV1Q53RT3 343 aa23.22■■□□□ 1.31
CPSF1-209ENST00000532725 CCDC174Q6PII3 467 aa23.22■■□□□ 1.31
CPSF1-209ENST00000532725 DHX30Q7L2E3 1194 aaKnown RBP eCLIP23.22■■□□□ 1.31
CPSF1-209ENST00000532725 CHST13Q8NET6 341 aa23.22■■□□□ 1.31
CPSF1-209ENST00000532725 MMP19Q99542 508 aa23.22■■□□□ 1.31
CPSF1-209ENST00000532725 CPVLQ9H3G5 476 aa23.22■■□□□ 1.31
CPSF1-209ENST00000532725 TRIM32Q13049 653 aa23.21■■□□□ 1.31
CPSF1-209ENST00000532725 TMTC2Q8N394 836 aa23.21■■□□□ 1.31
CPSF1-209ENST00000532725 STAG2Q8N3U4 1231 aa23.21■■□□□ 1.31
CPSF1-209ENST00000532725 TMEM106CQ9BVX2 250 aa23.21■■□□□ 1.31
CPSF1-209ENST00000532725 FLRT1Q9NZU1 646 aa23.21■■□□□ 1.31
CPSF1-209ENST00000532725 MAD2L2Q9UI95 211 aa23.21■■□□□ 1.31
CPSF1-209ENST00000532725 SNX14Q9Y5W7 946 aa23.21■■□□□ 1.31
CPSF1-209ENST00000532725 POTEFA5A3E0 1075 aa23.2■■□□□ 1.3
CPSF1-209ENST00000532725 PALM3A6NDB9 673 aaPredicted RBP23.2■■□□□ 1.3
CPSF1-209ENST00000532725 SH2B2O14492 632 aaPredicted RBP23.2■■□□□ 1.3
CPSF1-209ENST00000532725 ICAM1P05362 532 aa23.2■■□□□ 1.3
CPSF1-209ENST00000532725 CCL5P13501 91 aa23.2■■□□□ 1.3
CPSF1-209ENST00000532725 LIFRP42702 1097 aa23.2■■□□□ 1.3
CPSF1-209ENST00000532725 RGS19P49795 217 aa23.2■■□□□ 1.3
CPSF1-209ENST00000532725 KCTD2Q14681 263 aa23.2■■□□□ 1.3
CPSF1-209ENST00000532725 TKFCQ3LXA3 575 aa23.2■■□□□ 1.3
CPSF1-209ENST00000532725 DHX32Q7L7V1 743 aaKnown RBP23.2■■□□□ 1.3
CPSF1-209ENST00000532725 FBXO40Q9UH90 709 aa23.2■■□□□ 1.3
CPSF1-209ENST00000532725 GRM4Q14833 912 aa23.19■■□□□ 1.3
CPSF1-209ENST00000532725 MAP3K21Q5TCX8 1036 aa23.19■■□□□ 1.3
CPSF1-209ENST00000532725 ADGRF4Q8IZF3 695 aa23.19■■□□□ 1.3
CPSF1-209ENST00000532725 TRERF1Q96PN7 1200 aa23.19■■□□□ 1.3
CPSF1-209ENST00000532725 LRRC2Q9BYS8 371 aa23.19■■□□□ 1.3
CPSF1-209ENST00000532725 UNC93B1Q9H1C4 597 aa23.19■■□□□ 1.3
CPSF1-209ENST00000532725 SLC5A4Q9NY91 659 aa23.19■■□□□ 1.3
CPSF1-209ENST00000532725 WDR19Q8NEZ3 1342 aa23.18■■□□□ 1.3
CPSF1-209ENST00000532725 KLRF2D3W0D1 207 aa23.18■■□□□ 1.3
CPSF1-209ENST00000532725 PGK2P07205 417 aa23.18■■□□□ 1.3
CPSF1-209ENST00000532725 ALAS1P13196 640 aa23.18■■□□□ 1.3
CPSF1-209ENST00000532725 ZNF792Q3KQV3 632 aa23.18■■□□□ 1.3
CPSF1-209ENST00000532725 CATIPQ7Z7H3 387 aa23.18■■□□□ 1.3
CPSF1-209ENST00000532725 RNF208Q9H0X6 261 aa23.18■■□□□ 1.3
CPSF1-209ENST00000532725 HOMER2Q9NSB8 354 aa23.18■■□□□ 1.3
CPSF1-209ENST00000532725 CCPG1Q9ULG6 757 aa23.18■■□□□ 1.3
CPSF1-209ENST00000532725 DIS3Q9Y2L1 958 aaKnown RBP23.18■■□□□ 1.3
CPSF1-209ENST00000532725 ZNFX1Q9P2E3 1918 aaKnown RBP23.18■■□□□ 1.3
CPSF1-209ENST00000532725 DNAJC25-GNG10A0A024R161 153 aa23.17■■□□□ 1.3
CPSF1-209ENST00000532725 HMGB1P09429 215 aaKnown RBP23.17■■□□□ 1.3
CPSF1-209ENST00000532725 CACNB2Q08289 660 aaPredicted RBP23.17■■□□□ 1.3
CPSF1-209ENST00000532725 OLFML2BQ68BL8 750 aa23.17■■□□□ 1.3
CPSF1-209ENST00000532725 MAP3K14Q99558 947 aa23.17■■□□□ 1.3
CPSF1-209ENST00000532725 ACAD9Q9H845 621 aa23.17■■□□□ 1.3
CPSF1-209ENST00000532725 JMJD4Q9H9V9 463 aa23.17■■□□□ 1.3
CPSF1-209ENST00000532725 RNF146Q9NTX7 359 aa23.17■■□□□ 1.3
CPSF1-209ENST00000532725 RPTORQ8N122 1335 aa23.16■■□□□ 1.3
CPSF1-209ENST00000532725 GJB1P08034 283 aa23.16■■□□□ 1.3
CPSF1-209ENST00000532725 TAL1P17542 331 aaPredicted RBP23.16■■□□□ 1.3
CPSF1-209ENST00000532725 MUM1L1Q5H9M0 696 aa23.16■■□□□ 1.3
CPSF1-209ENST00000532725 SGMS1Q86VZ5 419 aa23.16■■□□□ 1.3
CPSF1-209ENST00000532725 ZNF654Q8IZM8 581 aa23.16■■□□□ 1.3
CPSF1-209ENST00000532725 ANKRD35Q8N283 1001 aa23.16■■□□□ 1.3
CPSF1-209ENST00000532725 DDX11Q96FC9 970 aa23.16■■□□□ 1.3
CPSF1-209ENST00000532725 MAML3Q96JK9 1138 aa23.16■■□□□ 1.3
CPSF1-209ENST00000532725 VAT1LQ9HCJ6 419 aa23.16■■□□□ 1.3
CPSF1-209ENST00000532725 PNMA2Q9UL42 364 aa23.16■■□□□ 1.3
CPSF1-209ENST00000532725 SMCHD1A6NHR9 2005 aa23.16■■□□□ 1.3
CPSF1-209ENST00000532725 ZNF236Q9UL36 1845 aa23.15■■□□□ 1.3
CPSF1-209ENST00000532725 PRKAR2AP13861 404 aaKnown RBP23.15■■□□□ 1.3
CPSF1-209ENST00000532725 EN2P19622 333 aaPredicted RBP23.15■■□□□ 1.3
CPSF1-209ENST00000532725 SLC35G1Q2M3R5 365 aa23.15■■□□□ 1.3
CPSF1-209ENST00000532725 MFSD14CQ5VZR4 134 aa23.15■■□□□ 1.3
CPSF1-209ENST00000532725 NFXL1Q6ZNB6 911 aa23.15■■□□□ 1.3
CPSF1-209ENST00000532725 TCEANC2Q96MN5 208 aa23.15■■□□□ 1.3
CPSF1-209ENST00000532725 JAKMIP1Q96N16 626 aaKnown RBP23.15■■□□□ 1.3
CPSF1-209ENST00000532725 HMX1Q9NP08 348 aaPredicted RBP23.15■■□□□ 1.3
CPSF1-209ENST00000532725 PAK6Q9NQU5 681 aaPredicted RBP23.15■■□□□ 1.3
CPSF1-209ENST00000532725 CCDC69A6NI79 296 aa23.14■■□□□ 1.29
CPSF1-209ENST00000532725 DDAH1O94760 285 aa23.14■■□□□ 1.29
CPSF1-209ENST00000532725 CYP2C19P33261 490 aa23.14■■□□□ 1.29
CPSF1-209ENST00000532725 CDC37Q16543 378 aaPredicted RBP23.14■■□□□ 1.29
CPSF1-209ENST00000532725 NUP133Q8WUM0 1156 aa23.14■■□□□ 1.29
CPSF1-209ENST00000532725 MTMR8Q96EF0 704 aa23.14■■□□□ 1.29
CPSF1-209ENST00000532725 MYL10Q9BUA6 226 aa23.14■■□□□ 1.29
CPSF1-209ENST00000532725 RIOX1Q9H6W3 641 aa23.14■■□□□ 1.29
CPSF1-209ENST00000532725 A1CFQ9NQ94 594 aaKnown RBP23.14■■□□□ 1.29
CPSF1-209ENST00000532725 BRCA2P51587 3418 aa23.14■■□□□ 1.29
CPSF1-209ENST00000532725 CPA1P15085 419 aa23.13■■□□□ 1.29
CPSF1-209ENST00000532725 GJA8P48165 433 aa23.13■■□□□ 1.29
CPSF1-209ENST00000532725 CLEC4DQ8WXI8 215 aa23.13■■□□□ 1.29
CPSF1-209ENST00000532725 XRN2Q9H0D6 950 aaKnown RBP eCLIP23.13■■□□□ 1.29
CPSF1-209ENST00000532725 SLC12A7Q9Y666 1083 aa23.13■■□□□ 1.29
CPSF1-209ENST00000532725 CYTH3O43739 400 aa23.12■■□□□ 1.29
CPSF1-209ENST00000532725 SGPL1O95470 568 aa23.12■■□□□ 1.29
CPSF1-209ENST00000532725 PSMA5P28066 241 aa23.12■■□□□ 1.29
CPSF1-209ENST00000532725 QRICH1Q2TAL8 776 aa23.12■■□□□ 1.29
CPSF1-209ENST00000532725 DHX16O60231 1041 aaKnown RBP23.11■■□□□ 1.29
CPSF1-209ENST00000532725 CCND3P30281 292 aaPredicted RBP23.11■■□□□ 1.29
CPSF1-209ENST00000532725 BLOC1S2Q6QNY1 142 aa23.11■■□□□ 1.29
CPSF1-209ENST00000532725 FBXL16Q8N461 479 aa23.11■■□□□ 1.29
CPSF1-209ENST00000532725 FAM133AQ8N9E0 248 aa23.11■■□□□ 1.29
CPSF1-209ENST00000532725 TRPV1Q8NER1 839 aa23.11■■□□□ 1.29
CPSF1-209ENST00000532725 U2AF1L4Q8WU68 220 aaKnown RBP23.11■■□□□ 1.29
CPSF1-209ENST00000532725 FGD4Q96M96 766 aa23.11■■□□□ 1.29
CPSF1-209ENST00000532725 DEFB118Q96PH6 123 aa23.11■■□□□ 1.29
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms