RNA–Protein interactions for RNA: ENST00000531474.2

NXF1-209, Transcript of nuclear RNA export factor 1, human

TSL 3

Gene NXF1, Length 548 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
NXF1-209	ENST00000531474	SAGE1	Q9NXZ1	904 aa		10.91	□□□□□ -0.66
NXF1-209	ENST00000531474	FEM1B	Q9UK73	627 aa		10.91	□□□□□ -0.66
NXF1-209	ENST00000531474	MYH4	Q9Y623	1939 aa		10.91	□□□□□ -0.66
NXF1-209	ENST00000531474	SPDYE16	A6NNV3	312 aa	Predicted RBP	10.9	□□□□□ -0.66
NXF1-209	ENST00000531474	SNHG28	P0DPA3	235 aa		10.9	□□□□□ -0.66
NXF1-209	ENST00000531474	STAT2	P52630	851 aa		10.9	□□□□□ -0.66
NXF1-209	ENST00000531474	CCT2	P78371	535 aa	Known RBP	10.9	□□□□□ -0.66
NXF1-209	ENST00000531474	DNM1	Q05193	864 aa	Known RBP	10.9	□□□□□ -0.66
NXF1-209	ENST00000531474	TROAP	Q12815	778 aa		10.9	□□□□□ -0.66
NXF1-209	ENST00000531474	GRM4	Q14833	912 aa		10.9	□□□□□ -0.66
NXF1-209	ENST00000531474	GPATCH4	Q5T3I0	446 aa	Known RBP	10.9	□□□□□ -0.66
NXF1-209	ENST00000531474	CCDC183	Q5T5S1	534 aa		10.9	□□□□□ -0.66
NXF1-209	ENST00000531474	TTBK2	Q6IQ55	1244 aa		10.9	□□□□□ -0.66
NXF1-209	ENST00000531474	APOA5	Q6Q788	366 aa		10.9	□□□□□ -0.66
NXF1-209	ENST00000531474	LRSAM1	Q6UWE0	723 aa		10.9	□□□□□ -0.66
NXF1-209	ENST00000531474	FAM160B2	Q86V87	743 aa		10.9	□□□□□ -0.66
NXF1-209	ENST00000531474	CCDC144CP	Q8IYA2	1237 aa		10.9	□□□□□ -0.66
NXF1-209	ENST00000531474	CTCFL	Q8NI51	663 aa	Predicted RBP	10.9	□□□□□ -0.66
NXF1-209	ENST00000531474	CHURC1	Q8WUH1	139 aa		10.9	□□□□□ -0.66
NXF1-209	ENST00000531474	KIFC2	Q96AC6	838 aa		10.9	□□□□□ -0.66
NXF1-209	ENST00000531474	ATG4C	Q96DT6	458 aa		10.9	□□□□□ -0.66
NXF1-209	ENST00000531474	PAGR1	Q9BTK6	254 aa		10.9	□□□□□ -0.66
NXF1-209	ENST00000531474	R3HDML	Q9H3Y0	253 aa		10.9	□□□□□ -0.66
NXF1-209	ENST00000531474	CPA4	Q9UI42	421 aa		10.9	□□□□□ -0.66
NXF1-209	ENST00000531474	TSKS	Q9UJT2	592 aa		10.9	□□□□□ -0.66
NXF1-209	ENST00000531474	BRPF3	Q9ULD4	1205 aa		10.9	□□□□□ -0.66
NXF1-209	ENST00000531474	PPP1R9A	Q9ULJ8	1098 aa		10.9	□□□□□ -0.66
NXF1-209	ENST00000531474	CNPY2	Q9Y2B0	182 aa		10.9	□□□□□ -0.66
NXF1-209	ENST00000531474	MYPN	Q86TC9	1320 aa		10.89	□□□□□ -0.67
NXF1-209	ENST00000531474	ADGRA2	Q96PE1	1338 aa		10.89	□□□□□ -0.67
NXF1-209	ENST00000531474	GOLGA8A	A7E2F4	631 aa		10.89	□□□□□ -0.67
NXF1-209	ENST00000531474	ZBTB43	O43298	467 aa		10.89	□□□□□ -0.67
NXF1-209	ENST00000531474	TLR2	O60603	784 aa		10.89	□□□□□ -0.67
NXF1-209	ENST00000531474	JAK2	O60674	1132 aa		10.89	□□□□□ -0.67
NXF1-209	ENST00000531474	CTDNEP1	O95476	244 aa		10.89	□□□□□ -0.67
NXF1-209	ENST00000531474	HSPA1A	P0DMV8	641 aa	Known RBP	10.89	□□□□□ -0.67
NXF1-209	ENST00000531474	HSPA1B	P0DMV9	641 aa	Known RBP	10.89	□□□□□ -0.67
NXF1-209	ENST00000531474	CALM1	P0DP23	149 aa		10.89	□□□□□ -0.67
NXF1-209	ENST00000531474	CALM2	P0DP24	149 aa		10.89	□□□□□ -0.67
NXF1-209	ENST00000531474	CALM3	P0DP25	149 aa		10.89	□□□□□ -0.67
NXF1-209	ENST00000531474	XRCC6	P12956	609 aa	Known RBP eCLIP	10.89	□□□□□ -0.67
NXF1-209	ENST00000531474	DSG3	P32926	999 aa		10.89	□□□□□ -0.67
NXF1-209	ENST00000531474	KIF5B	P33176	963 aa		10.89	□□□□□ -0.67
NXF1-209	ENST00000531474	SLC16A2	P36021	539 aa		10.89	□□□□□ -0.67
NXF1-209	ENST00000531474	GCLC	P48506	637 aa	Predicted RBP	10.89	□□□□□ -0.67
NXF1-209	ENST00000531474	METAP2	P50579	478 aa	Known RBP eCLIP	10.89	□□□□□ -0.67
NXF1-209	ENST00000531474	SYDE2	Q5VT97	1194 aa		10.89	□□□□□ -0.67
NXF1-209	ENST00000531474	BRAP	Q7Z569	592 aa		10.89	□□□□□ -0.67
NXF1-209	ENST00000531474	GTF3C2	Q8WUA4	911 aa	Predicted RBP	10.89	□□□□□ -0.67
NXF1-209	ENST00000531474	SPATA32	Q96LK8	384 aa		10.89	□□□□□ -0.67
NXF1-209	ENST00000531474	CPVL	Q9H3G5	476 aa		10.89	□□□□□ -0.67
NXF1-209	ENST00000531474	HOXC10	Q9NYD6	342 aa		10.89	□□□□□ -0.67
NXF1-209	ENST00000531474	ORC3	Q9UBD5	711 aa	Predicted RBP	10.89	□□□□□ -0.67
NXF1-209	ENST00000531474	CTDP1	Q9Y5B0	961 aa	Predicted RBP	10.89	□□□□□ -0.67
NXF1-209	ENST00000531474	PALM3	A6NDB9	673 aa	Predicted RBP	10.88	□□□□□ -0.67
NXF1-209	ENST00000531474	KLRF2	D3W0D1	207 aa		10.88	□□□□□ -0.67
NXF1-209	ENST00000531474	PEX10	O60683	326 aa		10.88	□□□□□ -0.67
NXF1-209	ENST00000531474	PLA2G6	O60733	806 aa		10.88	□□□□□ -0.67
NXF1-209	ENST00000531474	REST	Q13127	1097 aa		10.88	□□□□□ -0.67
NXF1-209	ENST00000531474	RTN1	Q16799	776 aa		10.88	□□□□□ -0.67
NXF1-209	ENST00000531474	STAG2	Q8N3U4	1231 aa		10.88	□□□□□ -0.67
NXF1-209	ENST00000531474	ANKRD13C	Q8N6S4	541 aa		10.88	□□□□□ -0.67
NXF1-209	ENST00000531474	PRPF38A	Q8NAV1	312 aa	Known RBP	10.88	□□□□□ -0.67
NXF1-209	ENST00000531474	DDX11	Q96FC9	970 aa		10.88	□□□□□ -0.67
NXF1-209	ENST00000531474	C8orf76	Q96K31	380 aa		10.88	□□□□□ -0.67
NXF1-209	ENST00000531474	MAP3K14	Q99558	947 aa		10.88	□□□□□ -0.67
NXF1-209	ENST00000531474	CFHR5	Q9BXR6	569 aa		10.88	□□□□□ -0.67
NXF1-209	ENST00000531474	UBA5	Q9GZZ9	404 aa		10.88	□□□□□ -0.67
NXF1-209	ENST00000531474	MAD2L2	Q9UI95	211 aa		10.88	□□□□□ -0.67
NXF1-209	ENST00000531474	PRR12	Q9ULL5	1215 aa		10.88	□□□□□ -0.67
NXF1-209	ENST00000531474	GPR25	O00155	361 aa		10.87	□□□□□ -0.67
NXF1-209	ENST00000531474	VWA5A	O00534	786 aa		10.87	□□□□□ -0.67
NXF1-209	ENST00000531474	FIBP	O43427	364 aa		10.87	□□□□□ -0.67
NXF1-209	ENST00000531474	ZBED4	O75132	1171 aa		10.87	□□□□□ -0.67
NXF1-209	ENST00000531474	ECM2	O94769	699 aa	Predicted RBP	10.87	□□□□□ -0.67
NXF1-209	ENST00000531474	PLEKHA8P1	O95397	391 aa		10.87	□□□□□ -0.67
NXF1-209	ENST00000531474	BCR	P11274	1271 aa		10.87	□□□□□ -0.67
NXF1-209	ENST00000531474	GNAQ	P50148	359 aa		10.87	□□□□□ -0.67
NXF1-209	ENST00000531474	SNAP25	P60880	206 aa		10.87	□□□□□ -0.67
NXF1-209	ENST00000531474	SSRP1	Q08945	709 aa	Known RBP	10.87	□□□□□ -0.67
NXF1-209	ENST00000531474	TRIM29	Q14134	588 aa		10.87	□□□□□ -0.67
NXF1-209	ENST00000531474	PLS1	Q14651	629 aa		10.87	□□□□□ -0.67
NXF1-209	ENST00000531474	FOXD4L6	Q3SYB3	417 aa	Predicted RBP	10.87	□□□□□ -0.67
NXF1-209	ENST00000531474	CCDC174	Q6PII3	467 aa		10.87	□□□□□ -0.67
NXF1-209	ENST00000531474	BTNL9	Q6UXG8	535 aa		10.87	□□□□□ -0.67
NXF1-209	ENST00000531474	FOXD4L3	Q6VB84	417 aa	Predicted RBP	10.87	□□□□□ -0.67
NXF1-209	ENST00000531474	LBX2	Q6XYB7	198 aa		10.87	□□□□□ -0.67
NXF1-209	ENST00000531474	MB21D1	Q8N884	522 aa		10.87	□□□□□ -0.67
NXF1-209	ENST00000531474	FANCB	Q8NB91	859 aa		10.87	□□□□□ -0.67
NXF1-209	ENST00000531474	GPRC5A	Q8NFJ5	357 aa		10.87	□□□□□ -0.67
NXF1-209	ENST00000531474	FBXO18	Q8NFZ0	1043 aa		10.87	□□□□□ -0.67
NXF1-209	ENST00000531474	VAT1L	Q9HCJ6	419 aa		10.87	□□□□□ -0.67
NXF1-209	ENST00000531474	TXNRD2	Q9NNW7	524 aa		10.87	□□□□□ -0.67
NXF1-209	ENST00000531474	TMEM63C	Q9P1W3	806 aa		10.87	□□□□□ -0.67
NXF1-209	ENST00000531474	BTBD7	Q9P203	1132 aa		10.87	□□□□□ -0.67
NXF1-209	ENST00000531474	RBPJL	Q9UBG7	517 aa		10.87	□□□□□ -0.67
NXF1-209	ENST00000531474	HPS5	Q9UPZ3	1129 aa		10.87	□□□□□ -0.67
NXF1-209	ENST00000531474	RABGAP1	Q9Y3P9	1069 aa		10.87	□□□□□ -0.67
NXF1-209	ENST00000531474	NID2	Q14112	1375 aa		10.87	□□□□□ -0.67
NXF1-209	ENST00000531474	STK36	Q9NRP7	1315 aa		10.86	□□□□□ -0.67

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