RNA–Protein interactions for RNA: ENST00000527916.1

CPSF1-203, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 5

Gene CPSF1, Length 506 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-203ENST00000527916 MBD4O95243 580 aa12.59□□□□□ -0.39
CPSF1-203ENST00000527916 SNAI1O95863 264 aaPredicted RBP12.59□□□□□ -0.39
CPSF1-203ENST00000527916 CYP2C18P33260 490 aa12.59□□□□□ -0.39
CPSF1-203ENST00000527916 GJA9P57773 515 aa12.59□□□□□ -0.39
CPSF1-203ENST00000527916 TFF2Q03403 129 aa12.59□□□□□ -0.39
CPSF1-203ENST00000527916 ACVR2BQ13705 512 aa12.59□□□□□ -0.39
CPSF1-203ENST00000527916 OTOP2Q7RTS6 562 aa12.59□□□□□ -0.39
CPSF1-203ENST00000527916 ZNF467Q7Z7K2 595 aaPredicted RBP12.59□□□□□ -0.39
CPSF1-203ENST00000527916 SIAH1Q8IUQ4 282 aa12.59□□□□□ -0.39
CPSF1-203ENST00000527916 AMOTL1Q8IY63 956 aa12.59□□□□□ -0.39
CPSF1-203ENST00000527916 RPUSD2Q8IZ73 545 aaKnown RBP12.59□□□□□ -0.39
CPSF1-203ENST00000527916 KBTBD3Q8NAB2 608 aa12.59□□□□□ -0.39
CPSF1-203ENST00000527916 DDRGK1Q96HY6 314 aa12.59□□□□□ -0.39
CPSF1-203ENST00000527916 LRFN3Q9BTN0 628 aa12.59□□□□□ -0.39
CPSF1-203ENST00000527916 TEX13BQ9BXU2 312 aa12.59□□□□□ -0.39
CPSF1-203ENST00000527916 HIPK3Q9H422 1215 aa12.59□□□□□ -0.39
CPSF1-203ENST00000527916 FBXO28Q9NVF7 368 aa12.59□□□□□ -0.39
CPSF1-203ENST00000527916 ZNF214Q9UL59 606 aaPredicted RBP12.59□□□□□ -0.39
CPSF1-203ENST00000527916 YBX2Q9Y2T7 364 aaKnown RBP12.59□□□□□ -0.39
CPSF1-203ENST00000527916 PCDHA11Q9Y5I1 949 aa12.59□□□□□ -0.39
CPSF1-203ENST00000527916 SLC4A7Q9Y6M7 1214 aa12.59□□□□□ -0.39
CPSF1-203ENST00000527916 PARP14Q460N5 1801 aa12.59□□□□□ -0.39
CPSF1-203ENST00000527916 TTC41PQ6P2S7 1318 aa12.59□□□□□ -0.39
CPSF1-203ENST00000527916 RAD21O60216 631 aa12.58□□□□□ -0.4
CPSF1-203ENST00000527916 ZFYP08048 801 aaPredicted RBP12.58□□□□□ -0.4
CPSF1-203ENST00000527916 AKR1B1P15121 316 aa12.58□□□□□ -0.4
CPSF1-203ENST00000527916 SLFNL1Q499Z3 407 aa12.58□□□□□ -0.4
CPSF1-203ENST00000527916 C12orf60Q5U649 245 aa12.58□□□□□ -0.4
CPSF1-203ENST00000527916 CLEC10AQ8IUN9 316 aa12.58□□□□□ -0.4
CPSF1-203ENST00000527916 SEZ6LQ9BYH1 1024 aa12.58□□□□□ -0.4
CPSF1-203ENST00000527916 UPF3AQ9H1J1 476 aaKnown RBP12.58□□□□□ -0.4
CPSF1-203ENST00000527916 ABHD16BQ9H3Z7 469 aa12.58□□□□□ -0.4
CPSF1-203ENST00000527916 KANSL2Q9H9L4 492 aa12.58□□□□□ -0.4
CPSF1-203ENST00000527916 COG5Q9UP83 839 aa12.58□□□□□ -0.4
CPSF1-203ENST00000527916 GBF1Q92538 1859 aa12.57□□□□□ -0.4
CPSF1-203ENST00000527916 USP17L12C9JPN9 530 aa12.57□□□□□ -0.4
CPSF1-203ENST00000527916 USP17L21D6R901 530 aa12.57□□□□□ -0.4
CPSF1-203ENST00000527916 PRKAB2O43741 272 aa12.57□□□□□ -0.4
CPSF1-203ENST00000527916 CABYRO75952 493 aa12.57□□□□□ -0.4
CPSF1-203ENST00000527916 CD4P01730 458 aa12.57□□□□□ -0.4
CPSF1-203ENST00000527916 EEF2P13639 858 aaKnown RBP12.57□□□□□ -0.4
CPSF1-203ENST00000527916 KCNQ1P51787 676 aa12.57□□□□□ -0.4
CPSF1-203ENST00000527916 EVX2Q03828 476 aa12.57□□□□□ -0.4
CPSF1-203ENST00000527916 AAMPQ13685 434 aa12.57□□□□□ -0.4
CPSF1-203ENST00000527916 LRRFIP1Q32MZ4 808 aaKnown RBP12.57□□□□□ -0.4
CPSF1-203ENST00000527916 CCDC144BQ3MJ40 725 aa12.57□□□□□ -0.4
CPSF1-203ENST00000527916 SNRNP48Q6IEG0 339 aaKnown RBP12.57□□□□□ -0.4
CPSF1-203ENST00000527916 GIMAP6Q6P9H5 292 aa12.57□□□□□ -0.4
CPSF1-203ENST00000527916 DYNLL2Q96FJ2 89 aa12.57□□□□□ -0.4
CPSF1-203ENST00000527916 STRBPQ96SI9 672 aaKnown RBP12.57□□□□□ -0.4
CPSF1-203ENST00000527916 PUS7LQ9H0K6 701 aaKnown RBP12.57□□□□□ -0.4
CPSF1-203ENST00000527916 EPHX3Q9H6B9 360 aa12.57□□□□□ -0.4
CPSF1-203ENST00000527916 CDKN2AIPQ9NXV6 580 aaPredicted RBP12.57□□□□□ -0.4
CPSF1-203ENST00000527916 CTDP1Q9Y5B0 961 aaPredicted RBP12.57□□□□□ -0.4
CPSF1-203ENST00000527916 SLC4A4Q9Y6R1 1079 aa12.57□□□□□ -0.4
CPSF1-203ENST00000527916 DNAJC25-GNG10A0A024R161 153 aa12.56□□□□□ -0.4
CPSF1-203ENST00000527916 CHGBP05060 677 aa12.56□□□□□ -0.4
CPSF1-203ENST00000527916 CYP2D6P10635 497 aa12.56□□□□□ -0.4
CPSF1-203ENST00000527916 RABGGTBP53611 331 aa12.56□□□□□ -0.4
CPSF1-203ENST00000527916 SBK1Q52WX2 424 aa12.56□□□□□ -0.4
CPSF1-203ENST00000527916 FAM83BQ5T0W9 1011 aa12.56□□□□□ -0.4
CPSF1-203ENST00000527916 C16orf86Q6ZW13 317 aa12.56□□□□□ -0.4
CPSF1-203ENST00000527916 REPS2Q8NFH8 660 aa12.56□□□□□ -0.4
CPSF1-203ENST00000527916 APPBP2Q92624 585 aa12.56□□□□□ -0.4
CPSF1-203ENST00000527916 SLF1Q9BQI6 1058 aa12.56□□□□□ -0.4
CPSF1-203ENST00000527916 ZBBXA8MT70 800 aa12.55□□□□□ -0.4
CPSF1-203ENST00000527916 RNF113AO15541 343 aaKnown RBP12.55□□□□□ -0.4
CPSF1-203ENST00000527916 ZEB2O60315 1214 aa12.55□□□□□ -0.4
CPSF1-203ENST00000527916 GPR37L1O60883 481 aa12.55□□□□□ -0.4
CPSF1-203ENST00000527916 ATP2A2P16615 1042 aaKnown RBP12.55□□□□□ -0.4
CPSF1-203ENST00000527916 POU3F3P20264 500 aaPredicted RBP12.55□□□□□ -0.4
CPSF1-203ENST00000527916 SLC4A3P48751 1232 aa12.55□□□□□ -0.4
CPSF1-203ENST00000527916 CDK8P49336 464 aa12.55□□□□□ -0.4
CPSF1-203ENST00000527916 CCL23P55773 120 aa12.55□□□□□ -0.4
CPSF1-203ENST00000527916 IRX5P78411 483 aaPredicted RBP12.55□□□□□ -0.4
CPSF1-203ENST00000527916 HDAC1Q13547 482 aaPredicted RBP12.55□□□□□ -0.4
CPSF1-203ENST00000527916 TMEM67Q5HYA8 995 aa12.55□□□□□ -0.4
CPSF1-203ENST00000527916 CTR9Q6PD62 1173 aa12.55□□□□□ -0.4
CPSF1-203ENST00000527916 NOL8Q76FK4 1167 aaKnown RBP12.55□□□□□ -0.4
CPSF1-203ENST00000527916 ANKRD35Q8N283 1001 aa12.55□□□□□ -0.4
CPSF1-203ENST00000527916 ARPP21Q9UBL0 812 aaPredicted RBP12.55□□□□□ -0.4
CPSF1-203ENST00000527916 FBXO40Q9UH90 709 aa12.55□□□□□ -0.4
CPSF1-203ENST00000527916 MTCH2Q9Y6C9 303 aa12.55□□□□□ -0.4
CPSF1-203ENST00000527916 MCM3APO60318 1980 aa12.55□□□□□ -0.4
CPSF1-203ENST00000527916 BRWD1Q9NSI6 2320 aa12.54□□□□□ -0.4
CPSF1-203ENST00000527916 GSG1L2A8MUP6 293 aa12.54□□□□□ -0.4
CPSF1-203ENST00000527916 ZBED4O75132 1171 aa12.54□□□□□ -0.4
CPSF1-203ENST00000527916 PFKMP08237 780 aa12.54□□□□□ -0.4
CPSF1-203ENST00000527916 GNAT2P19087 354 aa12.54□□□□□ -0.4
CPSF1-203ENST00000527916 NKX3-2P78367 333 aa12.54□□□□□ -0.4
CPSF1-203ENST00000527916 ITGA7Q13683 1181 aa12.54□□□□□ -0.4
CPSF1-203ENST00000527916 CXCL17Q6UXB2 119 aa12.54□□□□□ -0.4
CPSF1-203ENST00000527916 ARMCX2Q7L311 632 aa12.54□□□□□ -0.4
CPSF1-203ENST00000527916 PRPF38AQ8NAV1 312 aaKnown RBP12.54□□□□□ -0.4
CPSF1-203ENST00000527916 SLC43A3Q8NBI5 491 aa12.54□□□□□ -0.4
CPSF1-203ENST00000527916 PI4K2BQ8TCG2 481 aa12.54□□□□□ -0.4
CPSF1-203ENST00000527916 HLA-CQ95604 372 aa12.54□□□□□ -0.4
CPSF1-203ENST00000527916 OSBP2Q969R2 916 aa12.54□□□□□ -0.4
CPSF1-203ENST00000527916 CRBNQ96SW2 442 aa12.54□□□□□ -0.4
CPSF1-203ENST00000527916 NOC4LQ9BVI4 516 aaKnown RBP12.54□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 17 ms