RNA–Protein interactions for RNA: ENST00000520878.5

CLK4-206, Transcript of CDC like kinase 4, humanhuman

TSL 1 (best)

Gene CLK4, Length 3,722 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK4-206ENST00000520878 ICA1Q05084 483 aa12.78□□□□□ -0.36
CLK4-206ENST00000520878 NAA30Q147X3 362 aaPredicted RBP12.78□□□□□ -0.36
CLK4-206ENST00000520878 SEPT2Q15019 361 aa12.78□□□□□ -0.36
CLK4-206ENST00000520878 PODNQ7Z5L7 613 aa12.78□□□□□ -0.36
CLK4-206ENST00000520878 SNX29Q8TEQ0 813 aa12.78□□□□□ -0.36
CLK4-206ENST00000520878 TBC1D7Q9P0N9 293 aa12.78□□□□□ -0.36
CLK4-206ENST00000520878 PCDHA1Q9Y5I3 950 aa12.78□□□□□ -0.36
CLK4-206ENST00000520878 GOLGB1Q14789 3259 aaKnown RBP12.78□□□□□ -0.36
CLK4-206ENST00000520878 PALM3A6NDB9 673 aaPredicted RBP12.78□□□□□ -0.36
CLK4-206ENST00000520878 USP17L15C9J2P7 530 aa12.78□□□□□ -0.36
CLK4-206ENST00000520878 USP17L13C9JLJ4 530 aa12.78□□□□□ -0.36
CLK4-206ENST00000520878 USP17L11C9JVI0 530 aa12.78□□□□□ -0.36
CLK4-206ENST00000520878 USP17L18D6R9N7 530 aa12.78□□□□□ -0.36
CLK4-206ENST00000520878 USP17L22D6RA61 530 aa12.78□□□□□ -0.36
CLK4-206ENST00000520878 USP17L17D6RBQ6 530 aa12.78□□□□□ -0.36
CLK4-206ENST00000520878 USP17L19D6RCP7 530 aa12.78□□□□□ -0.36
CLK4-206ENST00000520878 USP17L20D6RJB6 530 aa12.78□□□□□ -0.36
CLK4-206ENST00000520878 CCP110O43303 1012 aa12.78□□□□□ -0.36
CLK4-206ENST00000520878 USP17L24Q0WX57 530 aa12.78□□□□□ -0.36
CLK4-206ENST00000520878 USP17L6PQ6QN14 398 aa12.78□□□□□ -0.36
CLK4-206ENST00000520878 CNKSR1Q969H4 720 aa12.78□□□□□ -0.36
CLK4-206ENST00000520878 SRRTQ9BXP5 876 aaKnown RBP12.78□□□□□ -0.36
CLK4-206ENST00000520878 TRIM49BA6NDI0 452 aa12.78□□□□□ -0.36
CLK4-206ENST00000520878 RRP9O43818 475 aaKnown RBP12.78□□□□□ -0.36
CLK4-206ENST00000520878 PDHBP11177 359 aa12.78□□□□□ -0.36
CLK4-206ENST00000520878 PLCG1P19174 1290 aa12.78□□□□□ -0.36
CLK4-206ENST00000520878 CCZ1BP86790 482 aa12.78□□□□□ -0.36
CLK4-206ENST00000520878 CCZ1P86791 482 aaPredicted RBP12.78□□□□□ -0.36
CLK4-206ENST00000520878 ARHGAP29Q52LW3 1261 aa12.78□□□□□ -0.36
CLK4-206ENST00000520878 CSRNP1Q96S65 589 aa12.78□□□□□ -0.36
CLK4-206ENST00000520878 OSBPL5Q9H0X9 879 aaPredicted RBP12.78□□□□□ -0.36
CLK4-206ENST00000520878 AKR1B15C9JRZ8 316 aaPredicted RBP12.77□□□□□ -0.36
CLK4-206ENST00000520878 IPO7O95373 1038 aaKnown RBP12.77□□□□□ -0.36
CLK4-206ENST00000520878 POTEDQ86YR6 584 aa12.77□□□□□ -0.36
CLK4-206ENST00000520878 VSTM4Q8IW00 320 aa12.77□□□□□ -0.36
CLK4-206ENST00000520878 CTAGE1Q96RT6 745 aa12.77□□□□□ -0.36
CLK4-206ENST00000520878 SLC39A2Q9NP94 309 aa12.77□□□□□ -0.36
CLK4-206ENST00000520878 DISC1Q9NRI5 854 aa12.77□□□□□ -0.36
CLK4-206ENST00000520878 CTDP1Q9Y5B0 961 aaPredicted RBP12.77□□□□□ -0.36
CLK4-206ENST00000520878 LAMA4Q16363 1823 aa12.77□□□□□ -0.36
CLK4-206ENST00000520878 SPDYE4A6NLX3 237 aa12.77□□□□□ -0.37
CLK4-206ENST00000520878 TDP2O95551 362 aa12.77□□□□□ -0.37
CLK4-206ENST00000520878 CD44P16070 742 aaKnown RBP12.77□□□□□ -0.37
CLK4-206ENST00000520878 EZH2Q15910 746 aaKnown RBP12.77□□□□□ -0.37
CLK4-206ENST00000520878 SV2BQ7L1I2 683 aa12.77□□□□□ -0.37
CLK4-206ENST00000520878 ADGRF4Q8IZF3 695 aa12.77□□□□□ -0.37
CLK4-206ENST00000520878 FEZ1Q99689 392 aa12.77□□□□□ -0.37
CLK4-206ENST00000520878 SH3GLB2Q9NR46 395 aa12.77□□□□□ -0.37
CLK4-206ENST00000520878 PODXL2Q9NZ53 605 aa12.77□□□□□ -0.37
CLK4-206ENST00000520878 COL4A1P02462 1669 aa12.77□□□□□ -0.37
CLK4-206ENST00000520878 POTEMA6NI47 508 aa12.77□□□□□ -0.37
CLK4-206ENST00000520878 EEF2P13639 858 aaKnown RBP12.77□□□□□ -0.37
CLK4-206ENST00000520878 ERCC5P28715 1186 aaPredicted RBP12.77□□□□□ -0.37
CLK4-206ENST00000520878 ENOX2Q16206 610 aaKnown RBP12.77□□□□□ -0.37
CLK4-206ENST00000520878 ASPRV1Q53RT3 343 aa12.77□□□□□ -0.37
CLK4-206ENST00000520878 GALNT17Q6IS24 598 aa12.77□□□□□ -0.37
CLK4-206ENST00000520878 MIGA2Q7L4E1 593 aa12.77□□□□□ -0.37
CLK4-206ENST00000520878 NOC3LQ8WTT2 800 aaKnown RBP12.77□□□□□ -0.37
CLK4-206ENST00000520878 CUL5Q93034 780 aa12.77□□□□□ -0.37
CLK4-206ENST00000520878 HPS3Q969F9 1004 aa12.77□□□□□ -0.37
CLK4-206ENST00000520878 ZBTB9Q96C00 473 aa12.77□□□□□ -0.37
CLK4-206ENST00000520878 MKRN1Q9UHC7 482 aaKnown RBP12.77□□□□□ -0.37
CLK4-206ENST00000520878 ABCB5Q2M3G0 1257 aa12.76□□□□□ -0.37
CLK4-206ENST00000520878 TMED8Q6PL24 325 aaPredicted RBP12.76□□□□□ -0.37
CLK4-206ENST00000520878 CSGALNACT2Q8N6G5 542 aa12.76□□□□□ -0.37
CLK4-206ENST00000520878 ZFP91Q96JP5 570 aaPredicted RBP12.76□□□□□ -0.37
CLK4-206ENST00000520878 NWD2Q9ULI1 1742 aa12.76□□□□□ -0.37
CLK4-206ENST00000520878 EP400Q96L91 3159 aa12.76□□□□□ -0.37
CLK4-206ENST00000520878 ONECUT3O60422 494 aaPredicted RBP12.76□□□□□ -0.37
CLK4-206ENST00000520878 SHROOM1Q2M3G4 852 aaPredicted RBP12.76□□□□□ -0.37
CLK4-206ENST00000520878 ARL6IP4Q66PJ3 421 aaKnown RBP12.76□□□□□ -0.37
CLK4-206ENST00000520878 PI4KBQ9UBF8 816 aa12.76□□□□□ -0.37
CLK4-206ENST00000520878 ZBTB12Q9Y330 459 aaPredicted RBP12.76□□□□□ -0.37
CLK4-206ENST00000520878 SPDYE3A6NKU9 549 aa12.76□□□□□ -0.37
CLK4-206ENST00000520878 GH2P01242 217 aa12.76□□□□□ -0.37
CLK4-206ENST00000520878 TRIM21P19474 475 aaKnown RBP12.76□□□□□ -0.37
CLK4-206ENST00000520878 MDM2Q00987 491 aaPredicted RBP12.76□□□□□ -0.37
CLK4-206ENST00000520878 DLGAP5Q15398 846 aa12.76□□□□□ -0.37
CLK4-206ENST00000520878 NPY5RQ15761 445 aa12.76□□□□□ -0.37
CLK4-206ENST00000520878 PPP1R13BQ96KQ4 1090 aa12.76□□□□□ -0.37
CLK4-206ENST00000520878 SWAP70Q9UH65 585 aa12.76□□□□□ -0.37
CLK4-206ENST00000520878 KIF2AO00139 706 aaPredicted RBP12.75□□□□□ -0.37
CLK4-206ENST00000520878 PRCPP42785 496 aa12.75□□□□□ -0.37
CLK4-206ENST00000520878 TERF1P54274 439 aa12.75□□□□□ -0.37
CLK4-206ENST00000520878 DPYDQ12882 1025 aa12.75□□□□□ -0.37
CLK4-206ENST00000520878 KMT5BQ4FZB7 885 aa12.75□□□□□ -0.37
CLK4-206ENST00000520878 SPZ1Q9BXG8 430 aa12.75□□□□□ -0.37
CLK4-206ENST00000520878 KCNJ18B7U540 433 aa12.75□□□□□ -0.37
CLK4-206ENST00000520878 CBX1P83916 185 aa12.75□□□□□ -0.37
CLK4-206ENST00000520878 KCNJ12Q14500 433 aa12.75□□□□□ -0.37
CLK4-206ENST00000520878 IL17AQ16552 155 aa12.75□□□□□ -0.37
CLK4-206ENST00000520878 PPP4R3BQ5MIZ7 849 aa12.75□□□□□ -0.37
CLK4-206ENST00000520878 CCDC174Q6PII3 467 aa12.75□□□□□ -0.37
CLK4-206ENST00000520878 XPO5Q9HAV4 1204 aaKnown RBP eCLIP12.75□□□□□ -0.37
CLK4-206ENST00000520878 ZNF277Q9NRM2 450 aaPredicted RBP12.75□□□□□ -0.37
CLK4-206ENST00000520878 HDAC9Q9UKV0 1011 aa12.75□□□□□ -0.37
CLK4-206ENST00000520878 DDTLA6NHG4 134 aaPredicted RBP12.75□□□□□ -0.37
CLK4-206ENST00000520878 CASQ1P31415 396 aa12.75□□□□□ -0.37
CLK4-206ENST00000520878 CASP14P31944 242 aa12.75□□□□□ -0.37
CLK4-206ENST00000520878 CACNB1Q02641 598 aaPredicted RBP12.75□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms