RNA–Protein interactions for RNA: ENST00000519895.5

MCF2-208, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene MCF2, Length 3,346 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-208ENST00000519895 IREB2P48200 963 aaKnown RBP3.4□□□□□ -1.86
MCF2-208ENST00000519895 GABPAQ06546 454 aa3.4□□□□□ -1.86
MCF2-208ENST00000519895 MAP2K5Q13163 448 aa3.4□□□□□ -1.86
MCF2-208ENST00000519895 PDAP1Q13442 181 aaKnown RBP3.4□□□□□ -1.86
MCF2-208ENST00000519895 SCARF1Q14162 830 aa3.4□□□□□ -1.86
MCF2-208ENST00000519895 COL19A1Q14993 1142 aa3.4□□□□□ -1.86
MCF2-208ENST00000519895 CFAP100Q494V2 611 aa3.4□□□□□ -1.86
MCF2-208ENST00000519895 C17orf99Q6UX52 265 aa3.4□□□□□ -1.86
MCF2-208ENST00000519895 TTC6Q86TZ1 520 aa3.4□□□□□ -1.86
MCF2-208ENST00000519895 CHD1LQ86WJ1 897 aa3.4□□□□□ -1.86
MCF2-208ENST00000519895 PROCA1Q8NCQ7 364 aaPredicted RBP3.4□□□□□ -1.86
MCF2-208ENST00000519895 FRAT1Q92837 279 aaPredicted RBP3.4□□□□□ -1.86
MCF2-208ENST00000519895 RIOK1Q9BRS2 568 aaKnown RBP3.4□□□□□ -1.86
MCF2-208ENST00000519895 NOL10Q9BSC4 688 aaKnown RBP3.4□□□□□ -1.86
MCF2-208ENST00000519895 ALDH8A1Q9H2A2 487 aaPredicted RBP3.4□□□□□ -1.86
MCF2-208ENST00000519895 BIN2Q9UBW5 565 aaPredicted RBP3.4□□□□□ -1.86
MCF2-208ENST00000519895 DAGLAQ9Y4D2 1042 aa3.4□□□□□ -1.86
MCF2-208ENST00000519895 GPSM3Q9Y4H4 160 aa3.4□□□□□ -1.86
MCF2-208ENST00000519895 RNF113AO15541 343 aaKnown RBP3.4□□□□□ -1.87
MCF2-208ENST00000519895 BRD1O95696 1058 aa3.4□□□□□ -1.87
MCF2-208ENST00000519895 POU3F2P20265 443 aaPredicted RBP3.4□□□□□ -1.87
MCF2-208ENST00000519895 MCAMP43121 646 aa3.4□□□□□ -1.87
MCF2-208ENST00000519895 SKIV2LQ15477 1246 aaKnown RBP3.4□□□□□ -1.87
MCF2-208ENST00000519895 BMP2KLQ5H9B9 411 aa3.4□□□□□ -1.87
MCF2-208ENST00000519895 PTCRAQ6ISU1 281 aaPredicted RBP3.4□□□□□ -1.87
MCF2-208ENST00000519895 ZC3H14Q6PJT7 736 aaKnown RBP3.4□□□□□ -1.87
MCF2-208ENST00000519895 VPS37DQ86XT2 251 aa3.4□□□□□ -1.87
MCF2-208ENST00000519895 TRMT44Q8IYL2 757 aaKnown RBP3.4□□□□□ -1.87
MCF2-208ENST00000519895 ZNF687Q8N1G0 1237 aa3.4□□□□□ -1.87
MCF2-208ENST00000519895 DDX55Q8NHQ9 600 aaKnown RBP eCLIP3.4□□□□□ -1.87
MCF2-208ENST00000519895 OXER1Q8TDS5 423 aa3.4□□□□□ -1.87
MCF2-208ENST00000519895 MARVELD3Q96A59 401 aa3.4□□□□□ -1.87
MCF2-208ENST00000519895 COG6Q9Y2V7 657 aa3.4□□□□□ -1.87
MCF2-208ENST00000519895 PCDHB15Q9Y5E8 787 aa3.4□□□□□ -1.87
MCF2-208ENST00000519895 SPDYE5A6NIY4 337 aa3.39□□□□□ -1.87
MCF2-208ENST00000519895 ATXN7O15265 892 aaPredicted RBP3.39□□□□□ -1.87
MCF2-208ENST00000519895 ADCY3O60266 1144 aa3.39□□□□□ -1.87
MCF2-208ENST00000519895 MX1P20591 662 aa3.39□□□□□ -1.87
MCF2-208ENST00000519895 PHKA1P46020 1223 aa3.39□□□□□ -1.87
MCF2-208ENST00000519895 FCGRTP55899 365 aa3.39□□□□□ -1.87
MCF2-208ENST00000519895 GTF2IP78347 998 aa3.39□□□□□ -1.87
MCF2-208ENST00000519895 MAP3K9P80192 1104 aa3.39□□□□□ -1.87
MCF2-208ENST00000519895 TAF1CQ15572 869 aaPredicted RBP3.39□□□□□ -1.87
MCF2-208ENST00000519895 TXNRD3Q86VQ6 643 aa3.39□□□□□ -1.87
MCF2-208ENST00000519895 ANKRD13AQ8IZ07 590 aa3.39□□□□□ -1.87
MCF2-208ENST00000519895 BANK1Q8NDB2 785 aa3.39□□□□□ -1.87
MCF2-208ENST00000519895 RUFY2Q8WXA3 655 aa3.39□□□□□ -1.87
MCF2-208ENST00000519895 GATA6Q92908 595 aa3.39□□□□□ -1.87
MCF2-208ENST00000519895 MKL1Q969V6 931 aa3.39□□□□□ -1.87
MCF2-208ENST00000519895 CHMP4CQ96CF2 233 aa3.39□□□□□ -1.87
MCF2-208ENST00000519895 ZNF594Q96JF6 807 aaPredicted RBP3.39□□□□□ -1.87
MCF2-208ENST00000519895 CRBNQ96SW2 442 aa3.39□□□□□ -1.87
MCF2-208ENST00000519895 CRNKL1Q9BZJ0 848 aaKnown RBP3.39□□□□□ -1.87
MCF2-208ENST00000519895 AS3MTQ9HBK9 375 aa3.39□□□□□ -1.87
MCF2-208ENST00000519895 PAG1Q9NWQ8 432 aa3.39□□□□□ -1.87
MCF2-208ENST00000519895 PPP4R2Q9NY27 417 aa3.39□□□□□ -1.87
MCF2-208ENST00000519895 NRBP1Q9UHY1 535 aa3.39□□□□□ -1.87
MCF2-208ENST00000519895 USTQ9Y2C2 406 aa3.39□□□□□ -1.87
MCF2-208ENST00000519895 MYH8P13535 1937 aa3.39□□□□□ -1.87
MCF2-208ENST00000519895 ZNF536O15090 1300 aa3.39□□□□□ -1.87
MCF2-208ENST00000519895 LRP3O75074 770 aa3.39□□□□□ -1.87
MCF2-208ENST00000519895 CYP2E1P05181 493 aaPredicted RBP3.39□□□□□ -1.87
MCF2-208ENST00000519895 HOXA7P31268 230 aaPredicted RBP3.39□□□□□ -1.87
MCF2-208ENST00000519895 PDE1AP54750 535 aa3.39□□□□□ -1.87
MCF2-208ENST00000519895 GHRHRQ02643 423 aa3.39□□□□□ -1.87
MCF2-208ENST00000519895 PABPC4Q13310 644 aaKnown RBP eCLIP3.39□□□□□ -1.87
MCF2-208ENST00000519895 CBX2Q14781 532 aaPredicted RBP3.39□□□□□ -1.87
MCF2-208ENST00000519895 CDC42EP5Q6NZY7 148 aa3.39□□□□□ -1.87
MCF2-208ENST00000519895 AACSQ86V21 672 aa3.39□□□□□ -1.87
MCF2-208ENST00000519895 SLC10A4Q96EP9 437 aa3.39□□□□□ -1.87
MCF2-208ENST00000519895 SEZ6LQ9BYH1 1024 aa3.39□□□□□ -1.87
MCF2-208ENST00000519895 SH2D4AQ9H788 454 aa3.39□□□□□ -1.87
MCF2-208ENST00000519895 PI4KBQ9UBF8 816 aa3.39□□□□□ -1.87
MCF2-208ENST00000519895 PCDHA11Q9Y5I1 949 aa3.39□□□□□ -1.87
MCF2-208ENST00000519895 IGKV6D-41A0A0C4DH26 115 aa3.39□□□□□ -1.87
MCF2-208ENST00000519895 ATP2A1O14983 1001 aa3.39□□□□□ -1.87
MCF2-208ENST00000519895 PPP1R12BO60237 982 aaPredicted RBP3.39□□□□□ -1.87
MCF2-208ENST00000519895 WISP1O95388 367 aa3.39□□□□□ -1.87
MCF2-208ENST00000519895 GTF2A2P52657 109 aa3.39□□□□□ -1.87
MCF2-208ENST00000519895 USP14P54578 494 aa3.39□□□□□ -1.87
MCF2-208ENST00000519895 MECOMQ03112 1051 aa3.39□□□□□ -1.87
MCF2-208ENST00000519895 TRAF1Q13077 416 aa3.39□□□□□ -1.87
MCF2-208ENST00000519895 PPP2R5BQ15173 497 aa3.39□□□□□ -1.87
MCF2-208ENST00000519895 NAA16Q6N069 864 aaPredicted RBP3.39□□□□□ -1.87
MCF2-208ENST00000519895 C16orf86Q6ZW13 317 aa3.39□□□□□ -1.87
MCF2-208ENST00000519895 FASTKD5Q7L8L6 764 aaKnown RBP3.39□□□□□ -1.87
MCF2-208ENST00000519895 ERO1BQ86YB8 467 aa3.39□□□□□ -1.87
MCF2-208ENST00000519895 PLEKHM2Q8IWE5 1019 aa3.39□□□□□ -1.87
MCF2-208ENST00000519895 SHCBP1Q8NEM2 672 aa3.39□□□□□ -1.87
MCF2-208ENST00000519895 SECISBP2LQ93073 1101 aaKnown RBP3.39□□□□□ -1.87
MCF2-208ENST00000519895 TTC14Q96N46 770 aa3.39□□□□□ -1.87
MCF2-208ENST00000519895 DBNDD2Q9BQY9 259 aa3.39□□□□□ -1.87
MCF2-208ENST00000519895 TMUB1Q9BVT8 246 aa3.39□□□□□ -1.87
MCF2-208ENST00000519895 DEFB129Q9H1M3 183 aa3.39□□□□□ -1.87
MCF2-208ENST00000519895 DBNDD1Q9H9R9 158 aa3.39□□□□□ -1.87
MCF2-208ENST00000519895 CTNNA3Q9UI47 895 aa3.39□□□□□ -1.87
MCF2-208ENST00000519895 TTF2Q9UNY4 1162 aaKnown RBP3.39□□□□□ -1.87
MCF2-208ENST00000519895 CHMP3Q9Y3E7 222 aa3.39□□□□□ -1.87
MCF2-208ENST00000519895 DCHS1Q96JQ0 3298 aa3.39□□□□□ -1.87
MCF2-208ENST00000519895 CFAP47Q6ZTR5 3102 aa3.38□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms