RNA–Protein interactions for RNA: ENST00000519664.1

SYNPO-204, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 4,571 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-204ENST00000519664 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP12.96□□□□□ -0.33
SYNPO-204ENST00000519664 HMGB2P26583 209 aaKnown RBP12.96□□□□□ -0.33
SYNPO-204ENST00000519664 CDC25BP30305 580 aa12.96□□□□□ -0.33
SYNPO-204ENST00000519664 NF2P35240 595 aa12.96□□□□□ -0.33
SYNPO-204ENST00000519664 TUBB4BP68371 445 aa12.96□□□□□ -0.33
SYNPO-204ENST00000519664 PABPC4Q13310 644 aaKnown RBP eCLIP12.96□□□□□ -0.33
SYNPO-204ENST00000519664 FBXO38Q6PIJ6 1188 aa12.96□□□□□ -0.33
SYNPO-204ENST00000519664 CERS3Q8IU89 383 aa12.96□□□□□ -0.33
SYNPO-204ENST00000519664 ENAHQ8N8S7 591 aaPredicted RBP12.96□□□□□ -0.33
SYNPO-204ENST00000519664 ENOX1Q8TC92 643 aaKnown RBP12.96□□□□□ -0.33
SYNPO-204ENST00000519664 OVOS2A0A0J9YW53 1432 aa12.96□□□□□ -0.33
SYNPO-204ENST00000519664 OVOS2Q6IE36 1432 aa12.96□□□□□ -0.33
SYNPO-204ENST00000519664 FAM205CA6NFA0 338 aa12.96□□□□□ -0.33
SYNPO-204ENST00000519664 NDUFAB1O14561 156 aa12.96□□□□□ -0.33
SYNPO-204ENST00000519664 PRR29P0C7W0 189 aa12.96□□□□□ -0.33
SYNPO-204ENST00000519664 CYP19A1P11511 503 aaPredicted RBP12.96□□□□□ -0.33
SYNPO-204ENST00000519664 PTPREP23469 700 aa12.96□□□□□ -0.33
SYNPO-204ENST00000519664 LONP1P36776 959 aaKnown RBP12.96□□□□□ -0.33
SYNPO-204ENST00000519664 EXOSC10Q01780 885 aaKnown RBP12.96□□□□□ -0.33
SYNPO-204ENST00000519664 FAM26FQ5R3K3 315 aa12.96□□□□□ -0.33
SYNPO-204ENST00000519664 OTUD6BQ8N6M0 293 aa12.96□□□□□ -0.33
SYNPO-204ENST00000519664 SMCR8Q8TEV9 937 aaPredicted RBP12.96□□□□□ -0.33
SYNPO-204ENST00000519664 DBNDD1Q9H9R9 158 aa12.96□□□□□ -0.33
SYNPO-204ENST00000519664 PRDM4Q9UKN5 801 aa12.96□□□□□ -0.33
SYNPO-204ENST00000519664 THRAP3Q9Y2W1 955 aaKnown RBP12.96□□□□□ -0.33
SYNPO-204ENST00000519664 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP12.96□□□□□ -0.33
SYNPO-204ENST00000519664 UBN2Q6ZU65 1347 aa12.96□□□□□ -0.34
SYNPO-204ENST00000519664 PPP1R7Q15435 360 aa12.96□□□□□ -0.34
SYNPO-204ENST00000519664 SHC4Q6S5L8 630 aa12.96□□□□□ -0.34
SYNPO-204ENST00000519664 DAAM2Q86T65 1068 aa12.96□□□□□ -0.34
SYNPO-204ENST00000519664 BANK1Q8NDB2 785 aa12.96□□□□□ -0.34
SYNPO-204ENST00000519664 BAZ2BQ9UIF8 2168 aaKnown RBP12.95□□□□□ -0.34
SYNPO-204ENST00000519664 TCP10L2B9ZVM9 353 aa12.95□□□□□ -0.34
SYNPO-204ENST00000519664 DESP17661 470 aa12.95□□□□□ -0.34
SYNPO-204ENST00000519664 CACNB3P54284 484 aa12.95□□□□□ -0.34
SYNPO-204ENST00000519664 PDE11AQ9HCR9 933 aa12.95□□□□□ -0.34
SYNPO-204ENST00000519664 CTTNBP2NLQ9P2B4 639 aa12.95□□□□□ -0.34
SYNPO-204ENST00000519664 DDX25Q9UHL0 483 aaKnown RBP12.95□□□□□ -0.34
SYNPO-204ENST00000519664 PCDHA4Q9UN74 947 aa12.95□□□□□ -0.34
SYNPO-204ENST00000519664 UBE2Q2LH0YL09 131 aa12.95□□□□□ -0.34
SYNPO-204ENST00000519664 USP37Q86T82 979 aa12.95□□□□□ -0.34
SYNPO-204ENST00000519664 KCNF1Q9H3M0 494 aa12.95□□□□□ -0.34
SYNPO-204ENST00000519664 ARHGEF10LQ9HCE6 1279 aa12.95□□□□□ -0.34
SYNPO-204ENST00000519664 KCNK9Q9NPC2 374 aa12.95□□□□□ -0.34
SYNPO-204ENST00000519664 MINPP1Q9UNW1 487 aa12.95□□□□□ -0.34
SYNPO-204ENST00000519664 RIPOR2Q9Y4F9 1068 aa12.95□□□□□ -0.34
SYNPO-204ENST00000519664 TRIM49BA6NDI0 452 aa12.95□□□□□ -0.34
SYNPO-204ENST00000519664 H0YIN7 160 aa12.95□□□□□ -0.34
SYNPO-204ENST00000519664 MEIS1O00470 390 aa12.95□□□□□ -0.34
SYNPO-204ENST00000519664 NCBP1Q09161 790 aaKnown RBP12.95□□□□□ -0.34
SYNPO-204ENST00000519664 ADAM9Q13443 819 aa12.95□□□□□ -0.34
SYNPO-204ENST00000519664 CUL4BQ13620 913 aa12.95□□□□□ -0.34
SYNPO-204ENST00000519664 RPS6KA1Q15418 735 aa12.95□□□□□ -0.34
SYNPO-204ENST00000519664 CERKLQ49MI3 558 aaPredicted RBP12.95□□□□□ -0.34
SYNPO-204ENST00000519664 USP49Q70CQ1 688 aa12.95□□□□□ -0.34
SYNPO-204ENST00000519664 PPM1EQ8WY54 764 aa12.95□□□□□ -0.34
SYNPO-204ENST00000519664 CCDC51Q96ER9 411 aa12.95□□□□□ -0.34
SYNPO-204ENST00000519664 PANK4Q9NVE7 773 aa12.95□□□□□ -0.34
SYNPO-204ENST00000519664 PP2D1A8MPX8 630 aa12.95□□□□□ -0.34
SYNPO-204ENST00000519664 NEBLO76041 1014 aa12.95□□□□□ -0.34
SYNPO-204ENST00000519664 APBA3O96018 575 aa12.95□□□□□ -0.34
SYNPO-204ENST00000519664 RASSF7Q02833 373 aa12.95□□□□□ -0.34
SYNPO-204ENST00000519664 NAA35Q5VZE5 725 aa12.95□□□□□ -0.34
SYNPO-204ENST00000519664 PEX26Q7Z412 305 aa12.95□□□□□ -0.34
SYNPO-204ENST00000519664 DPF2Q92785 391 aa12.95□□□□□ -0.34
SYNPO-204ENST00000519664 CCDC114Q96M63 670 aa12.95□□□□□ -0.34
SYNPO-204ENST00000519664 HAUS4Q9H6D7 363 aa12.95□□□□□ -0.34
SYNPO-204ENST00000519664 MYO1AQ9UBC5 1043 aa12.95□□□□□ -0.34
SYNPO-204ENST00000519664 CDC23Q9UJX2 597 aa12.95□□□□□ -0.34
SYNPO-204ENST00000519664 ABCA9Q8IUA7 1624 aa12.94□□□□□ -0.34
SYNPO-204ENST00000519664 TEX33O43247 280 aa12.94□□□□□ -0.34
SYNPO-204ENST00000519664 PRPF3O43395 683 aaKnown RBP12.94□□□□□ -0.34
SYNPO-204ENST00000519664 UBE2SQ16763 222 aa12.94□□□□□ -0.34
SYNPO-204ENST00000519664 TSGA10IPQ3SY00 556 aa12.94□□□□□ -0.34
SYNPO-204ENST00000519664 U2AF1L4Q8WU68 220 aaKnown RBP12.94□□□□□ -0.34
SYNPO-204ENST00000519664 IMPG2Q9BZV3 1241 aa12.94□□□□□ -0.34
SYNPO-204ENST00000519664 ARMCX3Q9UH62 379 aaPredicted RBP12.94□□□□□ -0.34
SYNPO-204ENST00000519664 KCNK3O14649 394 aa12.94□□□□□ -0.34
SYNPO-204ENST00000519664 PPIP5K2O43314 1243 aa12.94□□□□□ -0.34
SYNPO-204ENST00000519664 RESP18Q5W5W9 173 aa12.94□□□□□ -0.34
SYNPO-204ENST00000519664 SLFN13Q68D06 897 aa12.94□□□□□ -0.34
SYNPO-204ENST00000519664 PLA2G4DQ86XP0 818 aa12.94□□□□□ -0.34
SYNPO-204ENST00000519664 GINS2Q9Y248 185 aa12.94□□□□□ -0.34
SYNPO-204ENST00000519664 ADGRB1O14514 1584 aa12.94□□□□□ -0.34
SYNPO-204ENST00000519664 CDC42BPGQ6DT37 1551 aa12.94□□□□□ -0.34
SYNPO-204ENST00000519664 XRCC5P13010 732 aaKnown RBP12.94□□□□□ -0.34
SYNPO-204ENST00000519664 PLCG1P19174 1290 aa12.94□□□□□ -0.34
SYNPO-204ENST00000519664 ACTN2P35609 894 aa12.94□□□□□ -0.34
SYNPO-204ENST00000519664 SNAP25P60880 206 aa12.94□□□□□ -0.34
SYNPO-204ENST00000519664 EHHADHQ08426 723 aa12.94□□□□□ -0.34
SYNPO-204ENST00000519664 CFAP221Q4G0U5 840 aa12.94□□□□□ -0.34
SYNPO-204ENST00000519664 TTC19Q6DKK2 380 aaPredicted RBP12.94□□□□□ -0.34
SYNPO-204ENST00000519664 TICAM2Q86XR7 235 aa12.94□□□□□ -0.34
SYNPO-204ENST00000519664 RASAL2Q9UJF2 1139 aa12.94□□□□□ -0.34
SYNPO-204ENST00000519664 FAM196BA6NMK8 535 aa12.93□□□□□ -0.34
SYNPO-204ENST00000519664 GAS7O60861 476 aa12.93□□□□□ -0.34
SYNPO-204ENST00000519664 GDF11O95390 407 aa12.93□□□□□ -0.34
SYNPO-204ENST00000519664 ZSCAN20P17040 1043 aaPredicted RBP12.93□□□□□ -0.34
SYNPO-204ENST00000519664 ATP1A2P50993 1020 aa12.93□□□□□ -0.34
SYNPO-204ENST00000519664 CLCN6P51797 869 aa12.93□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 273.9 ms