RNA–Protein interactions for RNA: ENST00000516665.1

RNU6-539P-201, Transcript of RNA, U6 small nuclear 539, pseudogene, humanhuman

BASIC

Gene RNU6-539P, Length 103 nt, Biotype snRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU6-539P-201ENST00000516665 USP17L1Q7RTZ2 530 aa1.03□□□□□ -2.24
RNU6-539P-201ENST00000516665 PDZD3Q86UT5 571 aa1.03□□□□□ -2.24
RNU6-539P-201ENST00000516665 ZC3H15Q8WU90 426 aaKnown RBP1.03□□□□□ -2.24
RNU6-539P-201ENST00000516665 TCF12Q99081 682 aa1.03□□□□□ -2.24
RNU6-539P-201ENST00000516665 BCAS3Q9H6U6 928 aa1.03□□□□□ -2.24
RNU6-539P-201ENST00000516665 DDX3XO00571 662 aaKnown RBP eCLIP1.02□□□□□ -2.25
RNU6-539P-201ENST00000516665 FANCGO15287 622 aa1.02□□□□□ -2.25
RNU6-539P-201ENST00000516665 RHOBTB3O94955 611 aa1.02□□□□□ -2.25
RNU6-539P-201ENST00000516665 COMTP21964 271 aa1.02□□□□□ -2.25
RNU6-539P-201ENST00000516665 TKTP29401 623 aaKnown RBP1.02□□□□□ -2.25
RNU6-539P-201ENST00000516665 WEE1P30291 646 aa1.02□□□□□ -2.25
RNU6-539P-201ENST00000516665 ABCG1P45844 678 aa1.02□□□□□ -2.25
RNU6-539P-201ENST00000516665 HNRNPUQ00839 825 aaKnown RBP eCLIP1.02□□□□□ -2.25
RNU6-539P-201ENST00000516665 FHL1Q13642 323 aa1.02□□□□□ -2.25
RNU6-539P-201ENST00000516665 KRTAP5-7Q6L8G8 165 aa1.02□□□□□ -2.25
RNU6-539P-201ENST00000516665 GALNT18Q6P9A2 607 aa1.02□□□□□ -2.25
RNU6-539P-201ENST00000516665 ZPBP2Q6X784 338 aa1.02□□□□□ -2.25
RNU6-539P-201ENST00000516665 ZC3H7AQ8IWR0 971 aaKnown RBP1.02□□□□□ -2.25
RNU6-539P-201ENST00000516665 LINC00482Q8N8I6 264 aa1.02□□□□□ -2.25
RNU6-539P-201ENST00000516665 MFSD2AQ8NA29 543 aa1.02□□□□□ -2.25
RNU6-539P-201ENST00000516665 NUP43Q8NFH3 380 aa1.02□□□□□ -2.25
RNU6-539P-201ENST00000516665 GPBAR1Q8TDU6 330 aa1.02□□□□□ -2.25
RNU6-539P-201ENST00000516665 SYT3Q9BQG1 590 aa1.02□□□□□ -2.25
RNU6-539P-201ENST00000516665 ZNF768Q9H5H4 540 aaKnown RBP1.02□□□□□ -2.25
RNU6-539P-201ENST00000516665 ZNF112Q9UJU3 913 aa1.02□□□□□ -2.25
RNU6-539P-201ENST00000516665 APBB1O00213 710 aa1.01□□□□□ -2.25
RNU6-539P-201ENST00000516665 ACO1P21399 889 aaKnown RBP1.01□□□□□ -2.25
RNU6-539P-201ENST00000516665 PMLP29590 882 aa1.01□□□□□ -2.25
RNU6-539P-201ENST00000516665 PRR5P85299 388 aa1.01□□□□□ -2.25
RNU6-539P-201ENST00000516665 ZNF517Q6ZMY9 492 aaPredicted RBP1.01□□□□□ -2.25
RNU6-539P-201ENST00000516665 Q6ZSN1 163 aa1.01□□□□□ -2.25
RNU6-539P-201ENST00000516665 Q6ZTC4 211 aa1.01□□□□□ -2.25
RNU6-539P-201ENST00000516665 ZSCAN29Q8IWY8 852 aaPredicted RBP1.01□□□□□ -2.25
RNU6-539P-201ENST00000516665 DTWD2Q8NBA8 298 aa1.01□□□□□ -2.25
RNU6-539P-201ENST00000516665 KCT2Q8NC54 265 aa1.01□□□□□ -2.25
RNU6-539P-201ENST00000516665 ADAMTS15Q8TE58 950 aa1.01□□□□□ -2.25
RNU6-539P-201ENST00000516665 MKRN1Q9UHC7 482 aaKnown RBP1.01□□□□□ -2.25
RNU6-539P-201ENST00000516665 CCDC187A0A096LP49 1063 aa1□□□□□ -2.25
RNU6-539P-201ENST00000516665 SHISA3A0PJX4 238 aa1□□□□□ -2.25
RNU6-539P-201ENST00000516665 TMEM82A0PJX8 343 aa1□□□□□ -2.25
RNU6-539P-201ENST00000516665 C9orf118A6NHY6 69 aa1□□□□□ -2.25
RNU6-539P-201ENST00000516665 B4GALT4O60513 344 aa1□□□□□ -2.25
RNU6-539P-201ENST00000516665 DBHP09172 617 aa1□□□□□ -2.25
RNU6-539P-201ENST00000516665 ACRV1P26436 265 aa1□□□□□ -2.25
RNU6-539P-201ENST00000516665 MAP1SQ66K74 1059 aaPredicted RBP1□□□□□ -2.25
RNU6-539P-201ENST00000516665 PKN3Q6P5Z2 889 aa1□□□□□ -2.25
RNU6-539P-201ENST00000516665 OLFML1Q6UWY5 402 aa1□□□□□ -2.25
RNU6-539P-201ENST00000516665 PLEKHM2Q8IWE5 1019 aa1□□□□□ -2.25
RNU6-539P-201ENST00000516665 KBTBD2Q8IY47 623 aa1□□□□□ -2.25
RNU6-539P-201ENST00000516665 SRRM1Q8IYB3 904 aaKnown RBP1□□□□□ -2.25
RNU6-539P-201ENST00000516665 STK35Q8TDR2 534 aa1□□□□□ -2.25
RNU6-539P-201ENST00000516665 GORASP1Q9BQQ3 440 aa1□□□□□ -2.25
RNU6-539P-201ENST00000516665 WACQ9BTA9 647 aa1□□□□□ -2.25
RNU6-539P-201ENST00000516665 FAM117AQ9C073 453 aa1□□□□□ -2.25
RNU6-539P-201ENST00000516665 RSAD1Q9HA92 442 aa1□□□□□ -2.25
RNU6-539P-201ENST00000516665 LIN7BQ9HAP6 207 aa1□□□□□ -2.25
RNU6-539P-201ENST00000516665 PACSIN3Q9UKS6 424 aa1□□□□□ -2.25
RNU6-539P-201ENST00000516665 GPR55Q9Y2T6 319 aaPredicted RBP1□□□□□ -2.25
RNU6-539P-201ENST00000516665 FADS2P1A8MWK0 482 aa0.99□□□□□ -2.25
RNU6-539P-201ENST00000516665 H3BNC9 293 aa0.99□□□□□ -2.25
RNU6-539P-201ENST00000516665 SOX11P35716 441 aa0.99□□□□□ -2.25
RNU6-539P-201ENST00000516665 PRAMEF13Q5VWM6 474 aa0.99□□□□□ -2.25
RNU6-539P-201ENST00000516665 VRK3Q8IV63 474 aa0.99□□□□□ -2.25
RNU6-539P-201ENST00000516665 ALG3Q92685 438 aa0.99□□□□□ -2.25
RNU6-539P-201ENST00000516665 EAF1Q96JC9 268 aaPredicted RBP0.99□□□□□ -2.25
RNU6-539P-201ENST00000516665 CEP72Q9P209 647 aa0.99□□□□□ -2.25
RNU6-539P-201ENST00000516665 ACSL6Q9UKU0 697 aa0.99□□□□□ -2.25
RNU6-539P-201ENST00000516665 WTIPA6NIX2 430 aaPredicted RBP0.98□□□□□ -2.25
RNU6-539P-201ENST00000516665 SUSD5O60279 629 aa0.98□□□□□ -2.25
RNU6-539P-201ENST00000516665 PHACTR2O75167 634 aa0.98□□□□□ -2.25
RNU6-539P-201ENST00000516665 POLR3DP05423 398 aaPredicted RBP0.98□□□□□ -2.25
RNU6-539P-201ENST00000516665 ITPKAP23677 461 aa0.98□□□□□ -2.25
RNU6-539P-201ENST00000516665 HILS1P60008 231 aa0.98□□□□□ -2.25
RNU6-539P-201ENST00000516665 COL9A2Q14055 689 aaPredicted RBP0.98□□□□□ -2.25
RNU6-539P-201ENST00000516665 KRTAP21-2Q3LI59 83 aa0.98□□□□□ -2.25
RNU6-539P-201ENST00000516665 PRR31Q5SQ13 230 aa0.98□□□□□ -2.25
RNU6-539P-201ENST00000516665 ZNF425Q6IV72 752 aa0.98□□□□□ -2.25
RNU6-539P-201ENST00000516665 FBXO42Q6P3S6 717 aa0.98□□□□□ -2.25
RNU6-539P-201ENST00000516665 PAQR3Q6TCH7 311 aa0.98□□□□□ -2.25
RNU6-539P-201ENST00000516665 ZNF507Q8TCN5 953 aa0.98□□□□□ -2.25
RNU6-539P-201ENST00000516665 RGMAQ96B86 450 aa0.98□□□□□ -2.25
RNU6-539P-201ENST00000516665 ACSBG1Q96GR2 724 aa0.98□□□□□ -2.25
RNU6-539P-201ENST00000516665 IMPACTQ9P2X3 320 aa0.98□□□□□ -2.25
RNU6-539P-201ENST00000516665 KRTAP4-16G5E9R7 235 aaPredicted RBP0.97□□□□□ -2.25
RNU6-539P-201ENST00000516665 KRT86O43790 486 aa0.97□□□□□ -2.25
RNU6-539P-201ENST00000516665 LRRN2O75325 713 aa0.97□□□□□ -2.25
RNU6-539P-201ENST00000516665 CYP1A1P04798 512 aaPredicted RBP0.97□□□□□ -2.25
RNU6-539P-201ENST00000516665 CYBBP04839 570 aa0.97□□□□□ -2.25
RNU6-539P-201ENST00000516665 BMP8BP34820 402 aa0.97□□□□□ -2.25
RNU6-539P-201ENST00000516665 FKBP5Q13451 457 aaPredicted RBP0.97□□□□□ -2.25
RNU6-539P-201ENST00000516665 KRT81Q14533 505 aa0.97□□□□□ -2.25
RNU6-539P-201ENST00000516665 DGKKQ5KSL6 1271 aa0.97□□□□□ -2.25
RNU6-539P-201ENST00000516665 C16orf46Q6P387 395 aa0.97□□□□□ -2.25
RNU6-539P-201ENST00000516665 ERICH6Q7L0X2 663 aa0.97□□□□□ -2.25
RNU6-539P-201ENST00000516665 SLCO6A1Q86UG4 719 aa0.97□□□□□ -2.25
RNU6-539P-201ENST00000516665 ATCAYQ86WG3 371 aa0.97□□□□□ -2.25
RNU6-539P-201ENST00000516665 FUKQ8N0W3 1084 aa0.97□□□□□ -2.25
RNU6-539P-201ENST00000516665 BANK1Q8NDB2 785 aa0.97□□□□□ -2.25
RNU6-539P-201ENST00000516665 C11orf84Q9BUA3 381 aaPredicted RBP0.97□□□□□ -2.25
RNU6-539P-201ENST00000516665 FOXP3Q9BZS1 431 aa0.97□□□□□ -2.25
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms