RNA–Protein interactions for RNA: ENST00000514901.5

NUP54-216, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 500 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-216ENST00000514901 IL17RAQ96F46 866 aa16.62■□□□□ 0.25
NUP54-216ENST00000514901 LZTS2Q9BRK4 669 aa16.62■□□□□ 0.25
NUP54-216ENST00000514901 UBA5Q9GZZ9 404 aa16.62■□□□□ 0.25
NUP54-216ENST00000514901 GABRQQ9UN88 632 aa16.62■□□□□ 0.25
NUP54-216ENST00000514901 PTCH2Q9Y6C5 1203 aa16.62■□□□□ 0.25
NUP54-216ENST00000514901 COL11A1P12107 1806 aaPredicted RBP16.61■□□□□ 0.25
NUP54-216ENST00000514901 ICAM1P05362 532 aa16.61■□□□□ 0.25
NUP54-216ENST00000514901 RGS2P41220 211 aa16.61■□□□□ 0.25
NUP54-216ENST00000514901 RCAN1P53805 252 aa16.61■□□□□ 0.25
NUP54-216ENST00000514901 GRB14Q14449 540 aa16.61■□□□□ 0.25
NUP54-216ENST00000514901 CCDC174Q6PII3 467 aa16.61■□□□□ 0.25
NUP54-216ENST00000514901 Q6ZUG5 572 aa16.61■□□□□ 0.25
NUP54-216ENST00000514901 DHX30Q7L2E3 1194 aaKnown RBP eCLIP16.61■□□□□ 0.25
NUP54-216ENST00000514901 TRMT44Q8IYL2 757 aaKnown RBP16.61■□□□□ 0.25
NUP54-216ENST00000514901 ADGRF4Q8IZF3 695 aa16.61■□□□□ 0.25
NUP54-216ENST00000514901 STAG2Q8N3U4 1231 aa16.61■□□□□ 0.25
NUP54-216ENST00000514901 SLAIN1Q8ND83 568 aa16.61■□□□□ 0.25
NUP54-216ENST00000514901 PXYLP1Q8TE99 480 aa16.61■□□□□ 0.25
NUP54-216ENST00000514901 USP6NLQ92738 828 aa16.61■□□□□ 0.25
NUP54-216ENST00000514901 TCEANC2Q96MN5 208 aa16.61■□□□□ 0.25
NUP54-216ENST00000514901 SLC5A4Q9NY91 659 aa16.61■□□□□ 0.25
NUP54-216ENST00000514901 DHX16O60231 1041 aaKnown RBP16.6■□□□□ 0.25
NUP54-216ENST00000514901 MAP2K5Q13163 448 aa16.6■□□□□ 0.25
NUP54-216ENST00000514901 KCTD2Q14681 263 aa16.6■□□□□ 0.25
NUP54-216ENST00000514901 PPP2R5BQ15173 497 aa16.6■□□□□ 0.25
NUP54-216ENST00000514901 FANCBQ8NB91 859 aa16.6■□□□□ 0.25
NUP54-216ENST00000514901 MMP19Q99542 508 aa16.6■□□□□ 0.25
NUP54-216ENST00000514901 AGXT2Q9BYV1 514 aa16.6■□□□□ 0.25
NUP54-216ENST00000514901 CCPG1Q9ULG6 757 aa16.6■□□□□ 0.25
NUP54-216ENST00000514901 HPS5Q9UPZ3 1129 aa16.6■□□□□ 0.25
NUP54-216ENST00000514901 RIPK3Q9Y572 518 aa16.6■□□□□ 0.25
NUP54-216ENST00000514901 ZNF536O15090 1300 aa16.6■□□□□ 0.25
NUP54-216ENST00000514901 ZBTB43O43298 467 aa16.59■□□□□ 0.25
NUP54-216ENST00000514901 ADCY3O60266 1144 aa16.59■□□□□ 0.25
NUP54-216ENST00000514901 HOXC6P09630 235 aa16.59■□□□□ 0.25
NUP54-216ENST00000514901 CPA1P15085 419 aa16.59■□□□□ 0.25
NUP54-216ENST00000514901 GRK4P32298 578 aa16.59■□□□□ 0.25
NUP54-216ENST00000514901 SLC4A3P48751 1232 aa16.59■□□□□ 0.25
NUP54-216ENST00000514901 SNAP25P60880 206 aa16.59■□□□□ 0.25
NUP54-216ENST00000514901 TRAF1Q13077 416 aa16.59■□□□□ 0.25
NUP54-216ENST00000514901 SLC9C1Q4G0N8 1177 aa16.59■□□□□ 0.25
NUP54-216ENST00000514901 APOA5Q6Q788 366 aa16.59■□□□□ 0.25
NUP54-216ENST00000514901 DPP9Q86TI2 863 aa16.59■□□□□ 0.25
NUP54-216ENST00000514901 AGBL1Q96MI9 1066 aa16.59■□□□□ 0.25
NUP54-216ENST00000514901 TRERF1Q96PN7 1200 aa16.59■□□□□ 0.25
NUP54-216ENST00000514901 RIOX1Q9H6W3 641 aa16.59■□□□□ 0.25
NUP54-216ENST00000514901 ACAD9Q9H845 621 aa16.59■□□□□ 0.25
NUP54-216ENST00000514901 JMJD4Q9H9V9 463 aa16.59■□□□□ 0.25
NUP54-216ENST00000514901 UPF2Q9HAU5 1272 aaKnown RBP16.59■□□□□ 0.25
NUP54-216ENST00000514901 VAT1LQ9HCJ6 419 aa16.59■□□□□ 0.25
NUP54-216ENST00000514901 RBM28Q9NW13 759 aaKnown RBP16.59■□□□□ 0.25
NUP54-216ENST00000514901 ZSWIM8A7E2V4 1837 aa16.59■□□□□ 0.25
NUP54-216ENST00000514901 KLF18A0A0U1RQI7 1052 aa16.58■□□□□ 0.24
NUP54-216ENST00000514901 ALAS1P13196 640 aa16.58■□□□□ 0.24
NUP54-216ENST00000514901 CYP2B6P20813 491 aa16.58■□□□□ 0.24
NUP54-216ENST00000514901 ADORA2AP29274 412 aa16.58■□□□□ 0.24
NUP54-216ENST00000514901 CDC37Q16543 378 aaPredicted RBP16.58■□□□□ 0.24
NUP54-216ENST00000514901 BRF1Q92994 677 aa16.58■□□□□ 0.24
NUP54-216ENST00000514901 ARMC5Q96C12 935 aa16.58■□□□□ 0.24
NUP54-216ENST00000514901 MTMR8Q96EF0 704 aa16.58■□□□□ 0.24
NUP54-216ENST00000514901 ABHD8Q96I13 439 aa16.58■□□□□ 0.24
NUP54-216ENST00000514901 APBA2Q99767 749 aa16.58■□□□□ 0.24
NUP54-216ENST00000514901 MYL10Q9BUA6 226 aa16.58■□□□□ 0.24
NUP54-216ENST00000514901 MAF1Q9H063 256 aa16.58■□□□□ 0.24
NUP54-216ENST00000514901 ALDH8A1Q9H2A2 487 aaPredicted RBP16.58■□□□□ 0.24
NUP54-216ENST00000514901 CPVLQ9H3G5 476 aa16.58■□□□□ 0.24
NUP54-216ENST00000514901 PDRG1Q9NUG6 133 aa16.58■□□□□ 0.24
NUP54-216ENST00000514901 BAZ2BQ9UIF8 2168 aaKnown RBP16.57■□□□□ 0.24
NUP54-216ENST00000514901 CCDC196A0A1B0GTZ2 297 aa16.57■□□□□ 0.24
NUP54-216ENST00000514901 ZBTB5O15062 677 aa16.57■□□□□ 0.24
NUP54-216ENST00000514901 EVCP57679 992 aa16.57■□□□□ 0.24
NUP54-216ENST00000514901 MICU3Q86XE3 530 aa16.57■□□□□ 0.24
NUP54-216ENST00000514901 DDX11Q96FC9 970 aa16.57■□□□□ 0.24
NUP54-216ENST00000514901 SPZ1Q9BXG8 430 aa16.57■□□□□ 0.24
NUP54-216ENST00000514901 RNF146Q9NTX7 359 aa16.57■□□□□ 0.24
NUP54-216ENST00000514901 BRPF3Q9ULD4 1205 aa16.57■□□□□ 0.24
NUP54-216ENST00000514901 DIS3Q9Y2L1 958 aaKnown RBP16.57■□□□□ 0.24
NUP54-216ENST00000514901 HTTP42858 3142 aa16.56■□□□□ 0.24
NUP54-216ENST00000514901 UBXN2AP68543 259 aa16.56■□□□□ 0.24
NUP54-216ENST00000514901 APOBRQ0VD83 1088 aa16.56■□□□□ 0.24
NUP54-216ENST00000514901 RTN1Q16799 776 aa16.56■□□□□ 0.24
NUP54-216ENST00000514901 QRICH1Q2TAL8 776 aa16.56■□□□□ 0.24
NUP54-216ENST00000514901 FBXO11Q86XK2 927 aa16.56■□□□□ 0.24
NUP54-216ENST00000514901 ANKRD35Q8N283 1001 aa16.56■□□□□ 0.24
NUP54-216ENST00000514901 AMNQ9BXJ7 453 aa16.56■□□□□ 0.24
NUP54-216ENST00000514901 C22orf23Q9BZE7 217 aa16.56■□□□□ 0.24
NUP54-216ENST00000514901 UPF3BQ9BZI7 483 aaKnown RBP16.56■□□□□ 0.24
NUP54-216ENST00000514901 HOMER2Q9NSB8 354 aa16.56■□□□□ 0.24
NUP54-216ENST00000514901 BIN2Q9UBW5 565 aaPredicted RBP16.56■□□□□ 0.24
NUP54-216ENST00000514901 NAP1L2Q9ULW6 460 aaPredicted RBP16.56■□□□□ 0.24
NUP54-216ENST00000514901 ZNFX1Q9P2E3 1918 aaKnown RBP16.56■□□□□ 0.24
NUP54-216ENST00000514901 PFASO15067 1338 aa16.55■□□□□ 0.24
NUP54-216ENST00000514901 ABCB11O95342 1321 aa16.55■□□□□ 0.24
NUP54-216ENST00000514901 PNMA6FA0A0J9YX94 578 aa16.55■□□□□ 0.24
NUP54-216ENST00000514901 GOLGA8AA7E2F4 631 aa16.55■□□□□ 0.24
NUP54-216ENST00000514901 GOLGA8BA8MQT2 603 aa16.55■□□□□ 0.24
NUP54-216ENST00000514901 COBLO75128 1261 aa16.55■□□□□ 0.24
NUP54-216ENST00000514901 HMGCRP04035 888 aa16.55■□□□□ 0.24
NUP54-216ENST00000514901 RXRAP19793 462 aa16.55■□□□□ 0.24
NUP54-216ENST00000514901 ANKRD1Q15327 319 aa16.55■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 69.6 ms