RNA–Protein interactions for RNA: ENST00000512820.5

LIMCH1-216, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,071 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-216ENST00000512820 PCDHA4Q9UN74 947 aa9.34□□□□□ -0.91
LIMCH1-216ENST00000512820 SPDYE3A6NKU9 549 aa9.33□□□□□ -0.92
LIMCH1-216ENST00000512820 KLRF2D3W0D1 207 aa9.33□□□□□ -0.92
LIMCH1-216ENST00000512820 FAM13AO94988 1023 aa9.33□□□□□ -0.92
LIMCH1-216ENST00000512820 GBP2P32456 591 aaPredicted RBP9.33□□□□□ -0.92
LIMCH1-216ENST00000512820 RAD51AP2Q09MP3 1159 aa9.33□□□□□ -0.92
LIMCH1-216ENST00000512820 UBE4AQ14139 1066 aa9.33□□□□□ -0.92
LIMCH1-216ENST00000512820 NEK8Q86SG6 692 aa9.33□□□□□ -0.92
LIMCH1-216ENST00000512820 CEP57Q86XR8 500 aa9.33□□□□□ -0.92
LIMCH1-216ENST00000512820 RETREG2Q8NC44 543 aa9.33□□□□□ -0.92
LIMCH1-216ENST00000512820 P2RX5Q93086 422 aa9.33□□□□□ -0.92
LIMCH1-216ENST00000512820 LRRC45Q96CN5 670 aa9.33□□□□□ -0.92
LIMCH1-216ENST00000512820 NPHP4O75161 1426 aaPredicted RBP9.33□□□□□ -0.92
LIMCH1-216ENST00000512820 TMEM110-MUSTN1A8MSY1 372 aa9.33□□□□□ -0.92
LIMCH1-216ENST00000512820 MAP3K9P80192 1104 aa9.33□□□□□ -0.92
LIMCH1-216ENST00000512820 MSL1Q68DK7 614 aa9.33□□□□□ -0.92
LIMCH1-216ENST00000512820 HS2ST1Q7LGA3 356 aa9.33□□□□□ -0.92
LIMCH1-216ENST00000512820 MB21D1Q8N884 522 aa9.33□□□□□ -0.92
LIMCH1-216ENST00000512820 ANKS4BQ8N8V4 417 aa9.33□□□□□ -0.92
LIMCH1-216ENST00000512820 LSM14BQ9BX40 385 aaKnown RBP9.33□□□□□ -0.92
LIMCH1-216ENST00000512820 EHMT1Q9H9B1 1298 aa9.33□□□□□ -0.92
LIMCH1-216ENST00000512820 NF2P35240 595 aa9.33□□□□□ -0.92
LIMCH1-216ENST00000512820 ATP1A2P50993 1020 aa9.33□□□□□ -0.92
LIMCH1-216ENST00000512820 CYP27A1Q02318 531 aa9.33□□□□□ -0.92
LIMCH1-216ENST00000512820 IGDCC4Q8TDY8 1250 aa9.33□□□□□ -0.92
LIMCH1-216ENST00000512820 NAP1L4Q99733 375 aaKnown RBP9.33□□□□□ -0.92
LIMCH1-216ENST00000512820 NHEJ1Q9H9Q4 299 aaPredicted RBP9.33□□□□□ -0.92
LIMCH1-216ENST00000512820 ATP8A2Q9NTI2 1148 aa9.33□□□□□ -0.92
LIMCH1-216ENST00000512820 SLAIN2Q9P270 581 aa9.33□□□□□ -0.92
LIMCH1-216ENST00000512820 PARP3Q9Y6F1 533 aa9.33□□□□□ -0.92
LIMCH1-216ENST00000512820 ABCC12Q96J65 1359 aa9.33□□□□□ -0.92
LIMCH1-216ENST00000512820 GSG1L2A8MUP6 293 aa9.32□□□□□ -0.92
LIMCH1-216ENST00000512820 EPB41P11171 864 aaKnown RBP9.32□□□□□ -0.92
LIMCH1-216ENST00000512820 CALRP27797 417 aaKnown RBP9.32□□□□□ -0.92
LIMCH1-216ENST00000512820 CCT5P48643 541 aa9.32□□□□□ -0.92
LIMCH1-216ENST00000512820 ZBED6P86452 979 aa9.32□□□□□ -0.92
LIMCH1-216ENST00000512820 TMEM132AQ24JP5 1023 aa9.32□□□□□ -0.92
LIMCH1-216ENST00000512820 MYOCDQ8IZQ8 938 aa9.32□□□□□ -0.92
LIMCH1-216ENST00000512820 EYA3Q99504 573 aa9.32□□□□□ -0.92
LIMCH1-216ENST00000512820 MAGEF1Q9HAY2 307 aa9.32□□□□□ -0.92
LIMCH1-216ENST00000512820 RTCBQ9Y3I0 505 aaKnown RBP9.32□□□□□ -0.92
LIMCH1-216ENST00000512820 CYP2C19P33261 490 aa9.32□□□□□ -0.92
LIMCH1-216ENST00000512820 ST5P78524 1137 aa9.32□□□□□ -0.92
LIMCH1-216ENST00000512820 C2orf54Q08AI8 447 aa9.32□□□□□ -0.92
LIMCH1-216ENST00000512820 TC2NQ8N9U0 490 aa9.32□□□□□ -0.92
LIMCH1-216ENST00000512820 NGLY1Q96IV0 654 aa9.32□□□□□ -0.92
LIMCH1-216ENST00000512820 TRIM31Q9BZY9 425 aa9.32□□□□□ -0.92
LIMCH1-216ENST00000512820 NSRP1Q9H0G5 558 aaKnown RBP9.32□□□□□ -0.92
LIMCH1-216ENST00000512820 CUEDC2Q9H467 287 aa9.32□□□□□ -0.92
LIMCH1-216ENST00000512820 THAP9Q9H5L6 903 aa9.32□□□□□ -0.92
LIMCH1-216ENST00000512820 RIPOR2Q9Y4F9 1068 aa9.32□□□□□ -0.92
LIMCH1-216ENST00000512820 ERVV-1B6SEH8 477 aa9.32□□□□□ -0.92
LIMCH1-216ENST00000512820 RASSF7Q02833 373 aa9.32□□□□□ -0.92
LIMCH1-216ENST00000512820 TTC19Q6DKK2 380 aaPredicted RBP9.32□□□□□ -0.92
LIMCH1-216ENST00000512820 RUFY4Q6ZNE9 571 aa9.32□□□□□ -0.92
LIMCH1-216ENST00000512820 SENP2Q9HC62 589 aa9.32□□□□□ -0.92
LIMCH1-216ENST00000512820 ARHGAP25P42331 645 aa9.32□□□□□ -0.92
LIMCH1-216ENST00000512820 LIG3P49916 1009 aa9.32□□□□□ -0.92
LIMCH1-216ENST00000512820 IRX3P78415 501 aaPredicted RBP9.32□□□□□ -0.92
LIMCH1-216ENST00000512820 TMTC3Q6ZXV5 915 aa9.32□□□□□ -0.92
LIMCH1-216ENST00000512820 CCDC170Q8IYT3 715 aa9.32□□□□□ -0.92
LIMCH1-216ENST00000512820 MRPL44Q9H9J2 332 aaKnown RBP9.32□□□□□ -0.92
LIMCH1-216ENST00000512820 SAMM50Q9Y512 469 aa9.32□□□□□ -0.92
LIMCH1-216ENST00000512820 AGLP35573 1532 aa9.31□□□□□ -0.92
LIMCH1-216ENST00000512820 A0A1B0GTH6 734 aa9.31□□□□□ -0.92
LIMCH1-216ENST00000512820 LAD1O00515 517 aa9.31□□□□□ -0.92
LIMCH1-216ENST00000512820 GNPATO15228 680 aa9.31□□□□□ -0.92
LIMCH1-216ENST00000512820 KIF4AO95239 1232 aa9.31□□□□□ -0.92
LIMCH1-216ENST00000512820 ARL6IP4Q66PJ3 421 aaKnown RBP9.31□□□□□ -0.92
LIMCH1-216ENST00000512820 PLVAPQ9BX97 442 aa9.31□□□□□ -0.92
LIMCH1-216ENST00000512820 SRGAP2O75044 1071 aa9.31□□□□□ -0.92
LIMCH1-216ENST00000512820 MYL1P05976 194 aa9.31□□□□□ -0.92
LIMCH1-216ENST00000512820 CCNE1P24864 410 aa9.31□□□□□ -0.92
LIMCH1-216ENST00000512820 TRIM28Q13263 835 aaKnown RBP9.31□□□□□ -0.92
LIMCH1-216ENST00000512820 GBP6Q6ZN66 633 aa9.31□□□□□ -0.92
LIMCH1-216ENST00000512820 REXO1L1PQ8IX06 675 aa9.31□□□□□ -0.92
LIMCH1-216ENST00000512820 SCLT1Q96NL6 688 aa9.31□□□□□ -0.92
LIMCH1-216ENST00000512820 STMN4Q9H169 189 aaPredicted RBP9.31□□□□□ -0.92
LIMCH1-216ENST00000512820 PRDM4Q9UKN5 801 aa9.31□□□□□ -0.92
LIMCH1-216ENST00000512820 ANKRD62A6NC57 917 aa9.31□□□□□ -0.92
LIMCH1-216ENST00000512820 TRIM49BA6NDI0 452 aa9.31□□□□□ -0.92
LIMCH1-216ENST00000512820 E7EVH7 732 aa9.31□□□□□ -0.92
LIMCH1-216ENST00000512820 MYO1CO00159 1063 aa9.31□□□□□ -0.92
LIMCH1-216ENST00000512820 FLOT1O75955 427 aa9.31□□□□□ -0.92
LIMCH1-216ENST00000512820 UFL1O94874 794 aa9.31□□□□□ -0.92
LIMCH1-216ENST00000512820 RCAN1P53805 252 aa9.31□□□□□ -0.92
LIMCH1-216ENST00000512820 POLR2FP61218 127 aaKnown RBP9.31□□□□□ -0.92
LIMCH1-216ENST00000512820 CEP85LQ5SZL2 805 aa9.31□□□□□ -0.92
LIMCH1-216ENST00000512820 SUSD4Q5VX71 490 aa9.31□□□□□ -0.92
LIMCH1-216ENST00000512820 HAUS3Q68CZ6 603 aa9.31□□□□□ -0.92
LIMCH1-216ENST00000512820 KCTD16Q68DU8 428 aa9.31□□□□□ -0.92
LIMCH1-216ENST00000512820 ENAHQ8N8S7 591 aaPredicted RBP9.31□□□□□ -0.92
LIMCH1-216ENST00000512820 MTA3Q9BTC8 594 aa9.31□□□□□ -0.92
LIMCH1-216ENST00000512820 DISC1Q9NRI5 854 aa9.31□□□□□ -0.92
LIMCH1-216ENST00000512820 MTRF1LQ9UGC7 380 aaKnown RBP9.31□□□□□ -0.92
LIMCH1-216ENST00000512820 UTP11Q9Y3A2 253 aaKnown RBP9.31□□□□□ -0.92
LIMCH1-216ENST00000512820 CDHR2Q9BYE9 1310 aa9.31□□□□□ -0.92
LIMCH1-216ENST00000512820 ITSN1Q15811 1721 aa9.31□□□□□ -0.92
LIMCH1-216ENST00000512820 KCNK3O14649 394 aa9.31□□□□□ -0.92
LIMCH1-216ENST00000512820 CXCR5P32302 372 aa9.31□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 15 ms