RNA–Protein interactions for RNA: ENST00000503057.5

LIMCH1-205, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,467 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-205ENST00000503057 THAP9Q9H5L6 903 aa11.94□□□□□ -0.5
LIMCH1-205ENST00000503057 EXOC7Q9UPT5 735 aa11.94□□□□□ -0.5
LIMCH1-205ENST00000503057 C3P01024 1663 aa11.94□□□□□ -0.5
LIMCH1-205ENST00000503057 TMEM110-MUSTN1A8MSY1 372 aa11.94□□□□□ -0.5
LIMCH1-205ENST00000503057 KIF28PB7ZC32 967 aa11.94□□□□□ -0.5
LIMCH1-205ENST00000503057 RPS6KA4O75676 772 aa11.94□□□□□ -0.5
LIMCH1-205ENST00000503057 TTLL1O95922 423 aa11.94□□□□□ -0.5
LIMCH1-205ENST00000503057 RASGRP4Q8TDF6 673 aa11.94□□□□□ -0.5
LIMCH1-205ENST00000503057 RABGGTAQ92696 567 aa11.94□□□□□ -0.5
LIMCH1-205ENST00000503057 KAZALD1Q96I82 304 aa11.94□□□□□ -0.5
LIMCH1-205ENST00000503057 EPSTI1Q96J88 318 aa11.94□□□□□ -0.5
LIMCH1-205ENST00000503057 TUBGCP2Q9BSJ2 902 aa11.94□□□□□ -0.5
LIMCH1-205ENST00000503057 LSM14BQ9BX40 385 aaKnown RBP11.94□□□□□ -0.5
LIMCH1-205ENST00000503057 DCCP43146 1447 aa11.94□□□□□ -0.5
LIMCH1-205ENST00000503057 VIRMAQ69YN4 1812 aaKnown RBP11.94□□□□□ -0.5
LIMCH1-205ENST00000503057 ANKRD62A6NC57 917 aa11.93□□□□□ -0.5
LIMCH1-205ENST00000503057 ATP1A3P13637 1013 aa11.93□□□□□ -0.5
LIMCH1-205ENST00000503057 SMTNP53814 917 aa11.93□□□□□ -0.5
LIMCH1-205ENST00000503057 HOOK3Q86VS8 718 aa11.93□□□□□ -0.5
LIMCH1-205ENST00000503057 SMYD4Q8IYR2 804 aaPredicted RBP11.93□□□□□ -0.5
LIMCH1-205ENST00000503057 SYCE1Q8N0S2 351 aa11.93□□□□□ -0.5
LIMCH1-205ENST00000503057 MYCT1Q8N699 235 aa11.93□□□□□ -0.5
LIMCH1-205ENST00000503057 P2RX5Q93086 422 aa11.93□□□□□ -0.5
LIMCH1-205ENST00000503057 STK17AQ9UEE5 414 aa11.93□□□□□ -0.5
LIMCH1-205ENST00000503057 IGSF3O75054 1194 aa11.93□□□□□ -0.5
LIMCH1-205ENST00000503057 CERKLQ49MI3 558 aaPredicted RBP11.93□□□□□ -0.5
LIMCH1-205ENST00000503057 CCDC91Q7Z6B0 441 aa11.93□□□□□ -0.5
LIMCH1-205ENST00000503057 LARP4BQ92615 738 aaKnown RBP11.93□□□□□ -0.5
LIMCH1-205ENST00000503057 SLC39A2Q9NP94 309 aa11.93□□□□□ -0.5
LIMCH1-205ENST00000503057 NWD1Q149M9 1564 aa11.93□□□□□ -0.5
LIMCH1-205ENST00000503057 GOLGA8FQ08AF8 430 aa11.93□□□□□ -0.5
LIMCH1-205ENST00000503057 GOLGA8DPQ0D2H9 430 aa11.93□□□□□ -0.5
LIMCH1-205ENST00000503057 CLUL1Q15846 466 aa11.93□□□□□ -0.5
LIMCH1-205ENST00000503057 PFKFB3Q16875 520 aaPredicted RBP11.93□□□□□ -0.5
LIMCH1-205ENST00000503057 SEL1L2Q5TEA6 688 aa11.93□□□□□ -0.5
LIMCH1-205ENST00000503057 ENAHQ8N8S7 591 aaPredicted RBP11.93□□□□□ -0.5
LIMCH1-205ENST00000503057 KIFAP3Q92845 792 aa11.93□□□□□ -0.5
LIMCH1-205ENST00000503057 CDC23Q9UJX2 597 aa11.93□□□□□ -0.5
LIMCH1-205ENST00000503057 MTUS1Q9ULD2 1270 aa11.93□□□□□ -0.5
LIMCH1-205ENST00000503057 MEGF6O75095 1541 aa11.93□□□□□ -0.5
LIMCH1-205ENST00000503057 B4DLN1 442 aa11.93□□□□□ -0.5
LIMCH1-205ENST00000503057 ATP8B1O43520 1251 aa11.93□□□□□ -0.5
LIMCH1-205ENST00000503057 INCENPQ9NQS7 918 aa11.93□□□□□ -0.5
LIMCH1-205ENST00000503057 NARFQ9UHQ1 456 aa11.93□□□□□ -0.5
LIMCH1-205ENST00000503057 A6NNZ2 444 aa11.93□□□□□ -0.5
LIMCH1-205ENST00000503057 GCFC2P16383 781 aaKnown RBP11.93□□□□□ -0.5
LIMCH1-205ENST00000503057 TUBB8Q3ZCM7 444 aa11.93□□□□□ -0.5
LIMCH1-205ENST00000503057 MTRF1LQ9UGC7 380 aaKnown RBP11.93□□□□□ -0.5
LIMCH1-205ENST00000503057 SERPINB2P05120 415 aa11.92□□□□□ -0.5
LIMCH1-205ENST00000503057 WDR78Q5VTH9 848 aa11.92□□□□□ -0.5
LIMCH1-205ENST00000503057 SRGAP1Q7Z6B7 1085 aa11.92□□□□□ -0.5
LIMCH1-205ENST00000503057 ZNF34Q8IZ26 560 aa11.92□□□□□ -0.5
LIMCH1-205ENST00000503057 NSRP1Q9H0G5 558 aaKnown RBP11.92□□□□□ -0.5
LIMCH1-205ENST00000503057 DKC1O60832 514 aaKnown RBP eCLIP11.92□□□□□ -0.5
LIMCH1-205ENST00000503057 TTLL12Q14166 644 aaPredicted RBP11.92□□□□□ -0.5
LIMCH1-205ENST00000503057 FAM196AQ6ZSG2 479 aa11.92□□□□□ -0.5
LIMCH1-205ENST00000503057 RGS22Q8NE09 1264 aa11.92□□□□□ -0.5
LIMCH1-205ENST00000503057 XRCC5P13010 732 aaKnown RBP11.92□□□□□ -0.5
LIMCH1-205ENST00000503057 RAD51AP2Q09MP3 1159 aa11.92□□□□□ -0.5
LIMCH1-205ENST00000503057 TBCKQ8TEA7 893 aa11.92□□□□□ -0.5
LIMCH1-205ENST00000503057 CHURC1Q8WUH1 139 aa11.92□□□□□ -0.5
LIMCH1-205ENST00000503057 DYNLL2Q96FJ2 89 aa11.92□□□□□ -0.5
LIMCH1-205ENST00000503057 SRP68Q9UHB9 627 aaKnown RBP11.92□□□□□ -0.5
LIMCH1-205ENST00000503057 HYOU1Q9Y4L1 999 aa11.92□□□□□ -0.5
LIMCH1-205ENST00000503057 EBAG9O00559 213 aa11.92□□□□□ -0.5
LIMCH1-205ENST00000503057 KDM6AO15550 1401 aaPredicted RBP11.92□□□□□ -0.5
LIMCH1-205ENST00000503057 CFBP00751 764 aa11.92□□□□□ -0.5
LIMCH1-205ENST00000503057 FOSP01100 380 aaPredicted RBP11.92□□□□□ -0.5
LIMCH1-205ENST00000503057 PRR16Q569H4 304 aa11.92□□□□□ -0.5
LIMCH1-205ENST00000503057 FAM26FQ5R3K3 315 aa11.92□□□□□ -0.5
LIMCH1-205ENST00000503057 UTP14CQ5TAP6 766 aaKnown RBP11.92□□□□□ -0.5
LIMCH1-205ENST00000503057 FBXO11Q86XK2 927 aa11.92□□□□□ -0.5
LIMCH1-205ENST00000503057 DISC1Q9NRI5 854 aa11.92□□□□□ -0.5
LIMCH1-205ENST00000503057 STK32BQ9NY57 414 aa11.92□□□□□ -0.5
LIMCH1-205ENST00000503057 SCNN1DP51172 638 aa11.91□□□□□ -0.5
LIMCH1-205ENST00000503057 ICA1Q05084 483 aa11.91□□□□□ -0.5
LIMCH1-205ENST00000503057 PAK2Q13177 524 aa11.91□□□□□ -0.5
LIMCH1-205ENST00000503057 PIGSQ96S52 555 aa11.91□□□□□ -0.5
LIMCH1-205ENST00000503057 XPO5Q9HAV4 1204 aaKnown RBP eCLIP11.91□□□□□ -0.5
LIMCH1-205ENST00000503057 NLRC4Q9NPP4 1024 aa11.91□□□□□ -0.5
LIMCH1-205ENST00000503057 PKD2L1Q9P0L9 805 aa11.91□□□□□ -0.5
LIMCH1-205ENST00000503057 GOLGA6BA6NDN3 693 aa11.91□□□□□ -0.5
LIMCH1-205ENST00000503057 CCDC144BQ3MJ40 725 aa11.91□□□□□ -0.5
LIMCH1-205ENST00000503057 SLFN13Q68D06 897 aa11.91□□□□□ -0.5
LIMCH1-205ENST00000503057 SHC4Q6S5L8 630 aa11.91□□□□□ -0.5
LIMCH1-205ENST00000503057 CHGBP05060 677 aa11.91□□□□□ -0.5
LIMCH1-205ENST00000503057 ARID5BQ14865 1188 aa11.91□□□□□ -0.5
LIMCH1-205ENST00000503057 RPS6KA1Q15418 735 aa11.91□□□□□ -0.5
LIMCH1-205ENST00000503057 NLGN1Q8N2Q7 840 aa11.91□□□□□ -0.5
LIMCH1-205ENST00000503057 CCDC77Q9BR77 488 aa11.91□□□□□ -0.5
LIMCH1-205ENST00000503057 RIC8AQ9NPQ8 531 aa11.91□□□□□ -0.5
LIMCH1-205ENST00000503057 TAF6LQ9Y6J9 622 aa11.91□□□□□ -0.5
LIMCH1-205ENST00000503057 BCRP11274 1271 aa11.91□□□□□ -0.5
LIMCH1-205ENST00000503057 TCP11X2Q5H9J9 407 aa11.91□□□□□ -0.5
LIMCH1-205ENST00000503057 DCP1AQ9NPI6 582 aaPredicted RBP11.91□□□□□ -0.5
LIMCH1-205ENST00000503057 USP17L3A6NCW0 530 aa11.9□□□□□ -0.5
LIMCH1-205ENST00000503057 USP17L4A6NCW7 530 aa11.9□□□□□ -0.5
LIMCH1-205ENST00000503057 GOLGA6CA6NDK9 693 aa11.9□□□□□ -0.5
LIMCH1-205ENST00000503057 ORC4O43929 436 aa11.9□□□□□ -0.5
LIMCH1-205ENST00000503057 GOLGA6DP0CG33 693 aa11.9□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms