RNA–Protein interactions for RNA: ENST00000494518.1

SKA1-205, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 2

Gene SKA1, Length 746 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-205ENST00000494518 BMP3P12645 472 aa15.04■□□□□ -0
SKA1-205ENST00000494518 SNAP25P60880 206 aa15.04■□□□□ -0
SKA1-205ENST00000494518 TFAP4Q01664 338 aa15.04■□□□□ -0
SKA1-205ENST00000494518 PPARAQ07869 468 aa15.04■□□□□ -0
SKA1-205ENST00000494518 IKQ13123 557 aaPredicted RBP15.04■□□□□ -0
SKA1-205ENST00000494518 ACVR2BQ13705 512 aa15.04■□□□□ -0
SKA1-205ENST00000494518 NEDD1Q8NHV4 660 aa15.04■□□□□ -0
SKA1-205ENST00000494518 MKL1Q969V6 931 aa15.04■□□□□ -0
SKA1-205ENST00000494518 RNPC3Q96LT9 517 aaKnown RBP15.04■□□□□ -0
SKA1-205ENST00000494518 CDX2Q99626 313 aaPredicted RBP15.04■□□□□ -0
SKA1-205ENST00000494518 NACAP1Q9BZK3 213 aa15.04■□□□□ -0
SKA1-205ENST00000494518 ZNF287Q9HBT7 754 aa15.04■□□□□ -0
SKA1-205ENST00000494518 DDX49Q9Y6V7 483 aaKnown RBP15.04■□□□□ -0
SKA1-205ENST00000494518 PLIN4Q96Q06 1357 aa15.03■□□□□ -0
SKA1-205ENST00000494518 TTC41PQ6P2S7 1318 aa15.03■□□□□ -0
SKA1-205ENST00000494518 ATP2A1O14983 1001 aa15.03■□□□□ -0
SKA1-205ENST00000494518 KIAA0355O15063 1070 aa15.03■□□□□ -0
SKA1-205ENST00000494518 ERC2O15083 957 aa15.03■□□□□ -0
SKA1-205ENST00000494518 CNTN2Q02246 1040 aa15.03■□□□□ -0
SKA1-205ENST00000494518 CTDSPL2Q05D32 466 aa15.03■□□□□ -0
SKA1-205ENST00000494518 PDE4BQ07343 736 aa15.03■□□□□ -0
SKA1-205ENST00000494518 FAAP100Q0VG06 881 aa15.03■□□□□ -0
SKA1-205ENST00000494518 CCDC144BQ3MJ40 725 aa15.03■□□□□ -0
SKA1-205ENST00000494518 MAMDC4Q6UXC1 1216 aa15.03■□□□□ -0
SKA1-205ENST00000494518 ARMCX2Q7L311 632 aa15.03■□□□□ -0
SKA1-205ENST00000494518 PHF6Q8IWS0 365 aaKnown RBP eCLIP15.03■□□□□ -0
SKA1-205ENST00000494518 MSL3Q8N5Y2 521 aaKnown RBP15.03■□□□□ -0
SKA1-205ENST00000494518 GMCL1P1Q8NEA9 526 aa15.03■□□□□ -0
SKA1-205ENST00000494518 KLHDC9Q8NEP7 349 aa15.03■□□□□ -0
SKA1-205ENST00000494518 MYLIPQ8WY64 445 aa15.03■□□□□ -0
SKA1-205ENST00000494518 VTI1AQ96AJ9 217 aa15.03■□□□□ -0
SKA1-205ENST00000494518 TTYH1Q9H313 450 aaPredicted RBP15.03■□□□□ -0
SKA1-205ENST00000494518 SEMA6BQ9H3T3 888 aa15.03■□□□□ -0
SKA1-205ENST00000494518 NMT2O60551 498 aa15.02■□□□□ -0
SKA1-205ENST00000494518 DUSP11O75319 330 aaKnown RBP15.02■□□□□ -0
SKA1-205ENST00000494518 PTGS1P23219 599 aa15.02■□□□□ -0
SKA1-205ENST00000494518 MCCP23508 829 aa15.02■□□□□ -0
SKA1-205ENST00000494518 FPGSQ05932 587 aa15.02■□□□□ -0
SKA1-205ENST00000494518 LRRFIP1Q32MZ4 808 aaKnown RBP15.02■□□□□ -0
SKA1-205ENST00000494518 ZMYM1Q5SVZ6 1142 aa15.02■□□□□ -0
SKA1-205ENST00000494518 CCDC174Q6PII3 467 aa15.02■□□□□ -0
SKA1-205ENST00000494518 KCTD1Q719H9 257 aa15.02■□□□□ -0
SKA1-205ENST00000494518 CCDC144CPQ8IYA2 1237 aa15.02■□□□□ -0
SKA1-205ENST00000494518 CHST13Q8NET6 341 aa15.02■□□□□ -0
SKA1-205ENST00000494518 AGBL1Q96MI9 1066 aa15.02■□□□□ -0
SKA1-205ENST00000494518 TSEN34Q9BSV6 310 aaKnown RBP15.02■□□□□ -0
SKA1-205ENST00000494518 RNF146Q9NTX7 359 aa15.02■□□□□ -0
SKA1-205ENST00000494518 GBF1Q92538 1859 aa15.01□□□□□ -0.01
SKA1-205ENST00000494518 C11orf97A0A1B0GVM6 126 aaPredicted RBP15.01□□□□□ -0.01
SKA1-205ENST00000494518 DCDC2CA8MYV0 355 aa15.01□□□□□ -0.01
SKA1-205ENST00000494518 FOXP2O15409 715 aa15.01□□□□□ -0.01
SKA1-205ENST00000494518 ASGR1P07306 291 aa15.01□□□□□ -0.01
SKA1-205ENST00000494518 SLC3A2P08195 630 aaKnown RBP15.01□□□□□ -0.01
SKA1-205ENST00000494518 MX1P20591 662 aa15.01□□□□□ -0.01
SKA1-205ENST00000494518 STAT2P52630 851 aa15.01□□□□□ -0.01
SKA1-205ENST00000494518 SMAD3P84022 425 aaKnown RBP15.01□□□□□ -0.01
SKA1-205ENST00000494518 BEX3Q00994 111 aa15.01□□□□□ -0.01
SKA1-205ENST00000494518 CCSAPQ6IQ19 270 aaPredicted RBP15.01□□□□□ -0.01
SKA1-205ENST00000494518 ZNF467Q7Z7K2 595 aaPredicted RBP15.01□□□□□ -0.01
SKA1-205ENST00000494518 NUP133Q8WUM0 1156 aa15.01□□□□□ -0.01
SKA1-205ENST00000494518 COL25A1Q9BXS0 654 aaPredicted RBP15.01□□□□□ -0.01
SKA1-205ENST00000494518 ABHD16BQ9H3Z7 469 aa15.01□□□□□ -0.01
SKA1-205ENST00000494518 ACAD9Q9H845 621 aa15.01□□□□□ -0.01
SKA1-205ENST00000494518 FBXO40Q9UH90 709 aa15.01□□□□□ -0.01
SKA1-205ENST00000494518 STX8Q9UNK0 236 aa15.01□□□□□ -0.01
SKA1-205ENST00000494518 TTC28Q96AY4 2481 aa15.01□□□□□ -0.01
SKA1-205ENST00000494518 ZNF536O15090 1300 aa15□□□□□ -0.01
SKA1-205ENST00000494518 MOXD2PA6NHM9 499 aa15□□□□□ -0.01
SKA1-205ENST00000494518 TSPY2A6NKD2 308 aa15□□□□□ -0.01
SKA1-205ENST00000494518 ALAS1P13196 640 aa15□□□□□ -0.01
SKA1-205ENST00000494518 SLC1A4P43007 532 aa15□□□□□ -0.01
SKA1-205ENST00000494518 OAZ1P54368 228 aa15□□□□□ -0.01
SKA1-205ENST00000494518 VPS53Q5VIR6 699 aa15□□□□□ -0.01
SKA1-205ENST00000494518 NOL8Q76FK4 1167 aaKnown RBP15□□□□□ -0.01
SKA1-205ENST00000494518 ANKRD33Q7Z3H0 272 aa15□□□□□ -0.01
SKA1-205ENST00000494518 MAFAQ8NHW3 353 aaPredicted RBP15□□□□□ -0.01
SKA1-205ENST00000494518 GLT1D1Q96MS3 346 aa15□□□□□ -0.01
SKA1-205ENST00000494518 KATNBL1Q9H079 304 aa15□□□□□ -0.01
SKA1-205ENST00000494518 SPC25Q9HBM1 224 aa15□□□□□ -0.01
SKA1-205ENST00000494518 A1CFQ9NQ94 594 aaKnown RBP15□□□□□ -0.01
SKA1-205ENST00000494518 SPTBN5Q9NRC6 3674 aaKnown RBP14.99□□□□□ -0.01
SKA1-205ENST00000494518 SOWAHBA6NEL2 793 aa14.99□□□□□ -0.01
SKA1-205ENST00000494518 RANBP6O60518 1105 aaKnown RBP14.99□□□□□ -0.01
SKA1-205ENST00000494518 GNASQ5JWF2 1037 aa14.99□□□□□ -0.01
SKA1-205ENST00000494518 DHX30Q7L2E3 1194 aaKnown RBP eCLIP14.99□□□□□ -0.01
SKA1-205ENST00000494518 STAG1Q8WVM7 1258 aa14.99□□□□□ -0.01
SKA1-205ENST00000494518 TRERF1Q96PN7 1200 aa14.99□□□□□ -0.01
SKA1-205ENST00000494518 PPP1R12CQ9BZL4 782 aa14.99□□□□□ -0.01
SKA1-205ENST00000494518 UPF3AQ9H1J1 476 aaKnown RBP14.99□□□□□ -0.01
SKA1-205ENST00000494518 IL17RBQ9NRM6 502 aa14.99□□□□□ -0.01
SKA1-205ENST00000494518 TBX21Q9UL17 535 aa14.99□□□□□ -0.01
SKA1-205ENST00000494518 DDX52Q9Y2R4 599 aaKnown RBP eCLIP14.99□□□□□ -0.01
SKA1-205ENST00000494518 ASTN1O14525 1302 aa14.98□□□□□ -0.01
SKA1-205ENST00000494518 TIMP1P01033 207 aa14.98□□□□□ -0.01
SKA1-205ENST00000494518 FOSL2P15408 326 aa14.98□□□□□ -0.01
SKA1-205ENST00000494518 CST5P28325 142 aaPredicted RBP14.98□□□□□ -0.01
SKA1-205ENST00000494518 GJA9P57773 515 aa14.98□□□□□ -0.01
SKA1-205ENST00000494518 CCDC96Q2M329 555 aa14.98□□□□□ -0.01
SKA1-205ENST00000494518 MUM1L1Q5H9M0 696 aa14.98□□□□□ -0.01
SKA1-205ENST00000494518 ANKRD45Q5TZF3 282 aa14.98□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms