RNA–Protein interactions for RNA: ENST00000493475.2

COL6A3-213, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 669 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-213ENST00000493475 PRDM1O75626 825 aa13.72□□□□□ -0.21
COL6A3-213ENST00000493475 CHGBP05060 677 aa13.72□□□□□ -0.21
COL6A3-213ENST00000493475 C6orf222P0C671 652 aaPredicted RBP13.72□□□□□ -0.21
COL6A3-213ENST00000493475 ZNF865P0CJ78 1059 aaPredicted RBP13.72□□□□□ -0.21
COL6A3-213ENST00000493475 MX1P20591 662 aa13.72□□□□□ -0.21
COL6A3-213ENST00000493475 ACLYP53396 1101 aa13.72□□□□□ -0.21
COL6A3-213ENST00000493475 TFAP4Q01664 338 aa13.72□□□□□ -0.21
COL6A3-213ENST00000493475 FPGSQ05932 587 aa13.72□□□□□ -0.21
COL6A3-213ENST00000493475 PPARAQ07869 468 aa13.72□□□□□ -0.21
COL6A3-213ENST00000493475 ACVR2BQ13705 512 aa13.72□□□□□ -0.21
COL6A3-213ENST00000493475 NOL8Q76FK4 1167 aaKnown RBP13.72□□□□□ -0.21
COL6A3-213ENST00000493475 DHX30Q7L2E3 1194 aaKnown RBP eCLIP13.72□□□□□ -0.21
COL6A3-213ENST00000493475 LRRC47Q8N1G4 583 aaKnown RBP13.72□□□□□ -0.21
COL6A3-213ENST00000493475 GMCL1Q96IK5 515 aa13.72□□□□□ -0.21
COL6A3-213ENST00000493475 RNPC3Q96LT9 517 aaKnown RBP13.72□□□□□ -0.21
COL6A3-213ENST00000493475 RAVER2Q9HCJ3 691 aaKnown RBP13.72□□□□□ -0.21
COL6A3-213ENST00000493475 PNMA2Q9UL42 364 aa13.72□□□□□ -0.21
COL6A3-213ENST00000493475 RLFQ13129 1914 aa13.72□□□□□ -0.21
COL6A3-213ENST00000493475 SYNRGQ9UMZ2 1314 aa13.71□□□□□ -0.21
COL6A3-213ENST00000493475 TMEM265A0A087WTH1 108 aa13.71□□□□□ -0.21
COL6A3-213ENST00000493475 IGKV6D-41A0A0C4DH26 115 aa13.71□□□□□ -0.21
COL6A3-213ENST00000493475 POTEMA6NI47 508 aa13.71□□□□□ -0.21
COL6A3-213ENST00000493475 TMEM232C9JQI7 657 aa13.71□□□□□ -0.21
COL6A3-213ENST00000493475 M0R2C6 588 aa13.71□□□□□ -0.21
COL6A3-213ENST00000493475 KIAA0355O15063 1070 aa13.71□□□□□ -0.21
COL6A3-213ENST00000493475 SHHQ15465 462 aa13.71□□□□□ -0.21
COL6A3-213ENST00000493475 TSHZ3Q63HK5 1081 aa13.71□□□□□ -0.21
COL6A3-213ENST00000493475 CCDC129Q6ZRS4 1044 aa13.71□□□□□ -0.21
COL6A3-213ENST00000493475 ANKRD33Q7Z3H0 272 aa13.71□□□□□ -0.21
COL6A3-213ENST00000493475 TICAM2Q86XR7 235 aa13.71□□□□□ -0.21
COL6A3-213ENST00000493475 MPHOSPH6Q99547 160 aaKnown RBP13.71□□□□□ -0.21
COL6A3-213ENST00000493475 SEZ6LQ9BYH1 1024 aa13.71□□□□□ -0.21
COL6A3-213ENST00000493475 EPB41L4AQ9HCS5 686 aaPredicted RBP13.71□□□□□ -0.21
COL6A3-213ENST00000493475 CDKN2AIPQ9NXV6 580 aaPredicted RBP13.71□□□□□ -0.21
COL6A3-213ENST00000493475 DNAJC25-GNG10A0A024R161 153 aa13.7□□□□□ -0.22
COL6A3-213ENST00000493475 SMIM22K7EJ46 135 aa13.7□□□□□ -0.22
COL6A3-213ENST00000493475 ADAMTS4O75173 837 aa13.7□□□□□ -0.22
COL6A3-213ENST00000493475 CABYRO75952 493 aa13.7□□□□□ -0.22
COL6A3-213ENST00000493475 CST5P28325 142 aaPredicted RBP13.7□□□□□ -0.22
COL6A3-213ENST00000493475 ASTLQ6HA08 431 aaPredicted RBP13.7□□□□□ -0.22
COL6A3-213ENST00000493475 STAG1Q8WVM7 1258 aa13.7□□□□□ -0.22
COL6A3-213ENST00000493475 FAM161BQ96MY7 647 aa13.7□□□□□ -0.22
COL6A3-213ENST00000493475 MTIF3Q9H2K0 278 aaKnown RBP13.7□□□□□ -0.22
COL6A3-213ENST00000493475 HOMER2Q9NSB8 354 aa13.7□□□□□ -0.22
COL6A3-213ENST00000493475 DNAH12Q6ZR08 3092 aa13.7□□□□□ -0.22
COL6A3-213ENST00000493475 CUL9Q8IWT3 2517 aa13.69□□□□□ -0.22
COL6A3-213ENST00000493475 A0A0U1RQG5 324 aaPredicted RBP13.69□□□□□ -0.22
COL6A3-213ENST00000493475 RANBP6O60518 1105 aaKnown RBP13.69□□□□□ -0.22
COL6A3-213ENST00000493475 PLA2G6O60733 806 aa13.69□□□□□ -0.22
COL6A3-213ENST00000493475 TAL1P17542 331 aaPredicted RBP13.69□□□□□ -0.22
COL6A3-213ENST00000493475 PPIGQ13427 754 aaKnown RBP eCLIP13.69□□□□□ -0.22
COL6A3-213ENST00000493475 KCNA10Q16322 511 aa13.69□□□□□ -0.22
COL6A3-213ENST00000493475 CCDC144BQ3MJ40 725 aa13.69□□□□□ -0.22
COL6A3-213ENST00000493475 GNASQ5JWF2 1037 aa13.69□□□□□ -0.22
COL6A3-213ENST00000493475 ZMYM1Q5SVZ6 1142 aa13.69□□□□□ -0.22
COL6A3-213ENST00000493475 ARMCX2Q7L311 632 aa13.69□□□□□ -0.22
COL6A3-213ENST00000493475 PHF6Q8IWS0 365 aaKnown RBP eCLIP13.69□□□□□ -0.22
COL6A3-213ENST00000493475 TMEM199Q8N511 208 aa13.69□□□□□ -0.22
COL6A3-213ENST00000493475 EVI5LQ96CN4 794 aa13.69□□□□□ -0.22
COL6A3-213ENST00000493475 MS4A3Q96HJ5 214 aa13.69□□□□□ -0.22
COL6A3-213ENST00000493475 AP5M1Q9H0R1 490 aa13.69□□□□□ -0.22
COL6A3-213ENST00000493475 TOMM22Q9NS69 142 aa13.69□□□□□ -0.22
COL6A3-213ENST00000493475 RNF146Q9NTX7 359 aa13.69□□□□□ -0.22
COL6A3-213ENST00000493475 RIPK3Q9Y572 518 aa13.69□□□□□ -0.22
COL6A3-213ENST00000493475 COL6A3P12111 3177 aa13.68□□□□□ -0.22
COL6A3-213ENST00000493475 HSFX4A0A1B0GTS1 333 aaPredicted RBP13.68□□□□□ -0.22
COL6A3-213ENST00000493475 HSFX3A0A1B0GWH4 333 aaPredicted RBP13.68□□□□□ -0.22
COL6A3-213ENST00000493475 TRIM43BA6NCK2 446 aa13.68□□□□□ -0.22
COL6A3-213ENST00000493475 SNAI1O95863 264 aaPredicted RBP13.68□□□□□ -0.22
COL6A3-213ENST00000493475 MFAP1P55081 439 aaKnown RBP13.68□□□□□ -0.22
COL6A3-213ENST00000493475 GJA9P57773 515 aa13.68□□□□□ -0.22
COL6A3-213ENST00000493475 CCDC96Q2M329 555 aa13.68□□□□□ -0.22
COL6A3-213ENST00000493475 RCSD1Q6JBY9 416 aa13.68□□□□□ -0.22
COL6A3-213ENST00000493475 KLHDC9Q8NEP7 349 aa13.68□□□□□ -0.22
COL6A3-213ENST00000493475 TRIM43Q96BQ3 446 aaPredicted RBP13.68□□□□□ -0.22
COL6A3-213ENST00000493475 ADD3Q9UEY8 706 aaKnown RBP13.68□□□□□ -0.22
COL6A3-213ENST00000493475 PARP14Q460N5 1801 aa13.68□□□□□ -0.22
COL6A3-213ENST00000493475 COL11A1P12107 1806 aaPredicted RBP13.67□□□□□ -0.22
COL6A3-213ENST00000493475 GREB1LQ9C091 1923 aaPredicted RBP13.67□□□□□ -0.22
COL6A3-213ENST00000493475 B4DLN1 442 aa13.67□□□□□ -0.22
COL6A3-213ENST00000493475 TIMP1P01033 207 aa13.67□□□□□ -0.22
COL6A3-213ENST00000493475 ASGR1P07306 291 aa13.67□□□□□ -0.22
COL6A3-213ENST00000493475 ALAS1P13196 640 aa13.67□□□□□ -0.22
COL6A3-213ENST00000493475 MCCP23508 829 aa13.67□□□□□ -0.22
COL6A3-213ENST00000493475 MRPL12P52815 198 aaKnown RBP13.67□□□□□ -0.22
COL6A3-213ENST00000493475 TNFAIP2Q03169 654 aa13.67□□□□□ -0.22
COL6A3-213ENST00000493475 AAMPQ13685 434 aa13.67□□□□□ -0.22
COL6A3-213ENST00000493475 BRDTQ58F21 947 aaPredicted RBP13.67□□□□□ -0.22
COL6A3-213ENST00000493475 C9orf50Q5SZB4 431 aa13.67□□□□□ -0.22
COL6A3-213ENST00000493475 ANKRD45Q5TZF3 282 aa13.67□□□□□ -0.22
COL6A3-213ENST00000493475 SH3RF1Q7Z6J0 888 aa13.67□□□□□ -0.22
COL6A3-213ENST00000493475 CCDC144CPQ8IYA2 1237 aa13.67□□□□□ -0.22
COL6A3-213ENST00000493475 PI4K2BQ8TCG2 481 aa13.67□□□□□ -0.22
COL6A3-213ENST00000493475 DCAF4Q8WV16 495 aa13.67□□□□□ -0.22
COL6A3-213ENST00000493475 TRERF1Q96PN7 1200 aa13.67□□□□□ -0.22
COL6A3-213ENST00000493475 HELLSQ9NRZ9 838 aa13.67□□□□□ -0.22
COL6A3-213ENST00000493475 PLXNA1Q9UIW2 1896 aa13.66□□□□□ -0.22
COL6A3-213ENST00000493475 ARVCFO00192 962 aa13.66□□□□□ -0.22
COL6A3-213ENST00000493475 ATMINO43313 823 aaPredicted RBP13.66□□□□□ -0.22
COL6A3-213ENST00000493475 PCP11498 1178 aaKnown RBP13.66□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 45.2 ms