RNA–Protein interactions for RNA: ENST00000490099.5

TMEM39A-210, Transcript of transmembrane protein 39A, humanhuman

TSL 3

Gene TMEM39A, Length 868 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM39A-210ENST00000490099 SYNGAP1Q96PV0 1343 aa11.51□□□□□ -0.57
TMEM39A-210ENST00000490099 FRMPD3Q5JV73 1810 aa11.51□□□□□ -0.57
TMEM39A-210ENST00000490099 RANBP6O60518 1105 aaKnown RBP11.5□□□□□ -0.57
TMEM39A-210ENST00000490099 TOP1P11387 765 aaKnown RBP11.5□□□□□ -0.57
TMEM39A-210ENST00000490099 STAT2P52630 851 aa11.5□□□□□ -0.57
TMEM39A-210ENST00000490099 NKX3-2P78367 333 aa11.5□□□□□ -0.57
TMEM39A-210ENST00000490099 LRRC41Q15345 812 aa11.5□□□□□ -0.57
TMEM39A-210ENST00000490099 AKNAD1Q5T1N1 836 aa11.5□□□□□ -0.57
TMEM39A-210ENST00000490099 CPXCR1Q8N123 301 aa11.5□□□□□ -0.57
TMEM39A-210ENST00000490099 FAM133AQ8N9E0 248 aa11.5□□□□□ -0.57
TMEM39A-210ENST00000490099 DCAF4Q8WV16 495 aa11.5□□□□□ -0.57
TMEM39A-210ENST00000490099 ANKS1AQ92625 1134 aa11.5□□□□□ -0.57
TMEM39A-210ENST00000490099 FAM212AQ96EL1 285 aa11.5□□□□□ -0.57
TMEM39A-210ENST00000490099 TMEM47Q9BQJ4 181 aa11.5□□□□□ -0.57
TMEM39A-210ENST00000490099 SENP6Q9GZR1 1112 aaPredicted RBP11.5□□□□□ -0.57
TMEM39A-210ENST00000490099 STX8Q9UNK0 236 aa11.5□□□□□ -0.57
TMEM39A-210ENST00000490099 PHF24Q9UPV7 400 aa11.5□□□□□ -0.57
TMEM39A-210ENST00000490099 TRIM6-TRIM34B2RNG4 842 aa11.49□□□□□ -0.57
TMEM39A-210ENST00000490099 SNHG28P0DPA3 235 aa11.49□□□□□ -0.57
TMEM39A-210ENST00000490099 PDE4AP27815 886 aa11.49□□□□□ -0.57
TMEM39A-210ENST00000490099 MAGEA10P43363 369 aaPredicted RBP11.49□□□□□ -0.57
TMEM39A-210ENST00000490099 MFAP1P55081 439 aaKnown RBP11.49□□□□□ -0.57
TMEM39A-210ENST00000490099 GSE1Q14687 1217 aa11.49□□□□□ -0.57
TMEM39A-210ENST00000490099 TKFCQ3LXA3 575 aa11.49□□□□□ -0.57
TMEM39A-210ENST00000490099 GJC2Q5T442 439 aaPredicted RBP11.49□□□□□ -0.57
TMEM39A-210ENST00000490099 CCSAPQ6IQ19 270 aaPredicted RBP11.49□□□□□ -0.57
TMEM39A-210ENST00000490099 SLC39A5Q6ZMH5 540 aa11.49□□□□□ -0.57
TMEM39A-210ENST00000490099 TBC1D10CQ8IV04 446 aa11.49□□□□□ -0.57
TMEM39A-210ENST00000490099 KLHDC9Q8NEP7 349 aa11.49□□□□□ -0.57
TMEM39A-210ENST00000490099 RILPL2Q969X0 211 aa11.49□□□□□ -0.57
TMEM39A-210ENST00000490099 DDX11Q96FC9 970 aa11.49□□□□□ -0.57
TMEM39A-210ENST00000490099 KATNBL1Q9H079 304 aa11.49□□□□□ -0.57
TMEM39A-210ENST00000490099 PRR12Q9ULL5 1215 aa11.49□□□□□ -0.57
TMEM39A-210ENST00000490099 ZMYND8Q9ULU4 1186 aaPredicted RBP11.49□□□□□ -0.57
TMEM39A-210ENST00000490099 HIP1O00291 1037 aa11.48□□□□□ -0.57
TMEM39A-210ENST00000490099 ADAMTS4O75173 837 aa11.48□□□□□ -0.57
TMEM39A-210ENST00000490099 RARBP10826 455 aa11.48□□□□□ -0.57
TMEM39A-210ENST00000490099 ANO1Q5XXA6 986 aa11.48□□□□□ -0.57
TMEM39A-210ENST00000490099 MFSD6Q6ZSS7 791 aa11.48□□□□□ -0.57
TMEM39A-210ENST00000490099 KCTD1Q719H9 257 aa11.48□□□□□ -0.57
TMEM39A-210ENST00000490099 AGBL1Q96MI9 1066 aa11.48□□□□□ -0.57
TMEM39A-210ENST00000490099 DSCC1Q9BVC3 393 aa11.48□□□□□ -0.57
TMEM39A-210ENST00000490099 TSPYL2Q9H2G4 693 aaPredicted RBP11.48□□□□□ -0.57
TMEM39A-210ENST00000490099 A1CFQ9NQ94 594 aaKnown RBP11.48□□□□□ -0.57
TMEM39A-210ENST00000490099 PLXNA1Q9UIW2 1896 aa11.48□□□□□ -0.57
TMEM39A-210ENST00000490099 ASTN1O14525 1302 aa11.47□□□□□ -0.57
TMEM39A-210ENST00000490099 SOWAHBA6NEL2 793 aa11.47□□□□□ -0.57
TMEM39A-210ENST00000490099 KBTBD13C9JR72 458 aa11.47□□□□□ -0.57
TMEM39A-210ENST00000490099 HAX1O00165 279 aa11.47□□□□□ -0.57
TMEM39A-210ENST00000490099 DUSP11O75319 330 aaKnown RBP11.47□□□□□ -0.57
TMEM39A-210ENST00000490099 ICAM1P05362 532 aa11.47□□□□□ -0.57
TMEM39A-210ENST00000490099 PDHBP11177 359 aa11.47□□□□□ -0.57
TMEM39A-210ENST00000490099 AKR1A1P14550 325 aa11.47□□□□□ -0.57
TMEM39A-210ENST00000490099 SYN1P17600 705 aa11.47□□□□□ -0.57
TMEM39A-210ENST00000490099 ADCYAP1R1P41586 468 aa11.47□□□□□ -0.57
TMEM39A-210ENST00000490099 HAND2P61296 217 aa11.47□□□□□ -0.57
TMEM39A-210ENST00000490099 ACVR2BQ13705 512 aa11.47□□□□□ -0.57
TMEM39A-210ENST00000490099 LRIT3Q3SXY7 679 aa11.47□□□□□ -0.57
TMEM39A-210ENST00000490099 TTBK2Q6IQ55 1244 aa11.47□□□□□ -0.57
TMEM39A-210ENST00000490099 GPR153Q6NV75 609 aa11.47□□□□□ -0.57
TMEM39A-210ENST00000490099 CWC27Q6UX04 472 aaKnown RBP11.47□□□□□ -0.57
TMEM39A-210ENST00000490099 RASGRP2Q7LDG7 609 aa11.47□□□□□ -0.57
TMEM39A-210ENST00000490099 DGKHQ86XP1 1220 aa11.47□□□□□ -0.57
TMEM39A-210ENST00000490099 ANKRD35Q8N283 1001 aa11.47□□□□□ -0.57
TMEM39A-210ENST00000490099 MORC4Q8TE76 937 aa11.47□□□□□ -0.57
TMEM39A-210ENST00000490099 TSEN34Q9BSV6 310 aaKnown RBP11.47□□□□□ -0.57
TMEM39A-210ENST00000490099 RANBP17Q9H2T7 1088 aaKnown RBP11.47□□□□□ -0.57
TMEM39A-210ENST00000490099 ABHD16BQ9H3Z7 469 aa11.47□□□□□ -0.57
TMEM39A-210ENST00000490099 RNF41Q9H4P4 317 aaPredicted RBP11.47□□□□□ -0.57
TMEM39A-210ENST00000490099 ACAD9Q9H845 621 aa11.47□□□□□ -0.57
TMEM39A-210ENST00000490099 RTN4Q9NQC3 1192 aaKnown RBP11.47□□□□□ -0.57
TMEM39A-210ENST00000490099 XPNPEP3Q9NQH7 507 aa11.47□□□□□ -0.57
TMEM39A-210ENST00000490099 CDKN2AIPQ9NXV6 580 aaPredicted RBP11.47□□□□□ -0.57
TMEM39A-210ENST00000490099 FAM184BQ9ULE4 1060 aa11.47□□□□□ -0.57
TMEM39A-210ENST00000490099 CNPY2Q9Y2B0 182 aa11.47□□□□□ -0.57
TMEM39A-210ENST00000490099 SOX1O00570 391 aaPredicted RBP11.46□□□□□ -0.57
TMEM39A-210ENST00000490099 ZNF213O14771 459 aa11.46□□□□□ -0.57
TMEM39A-210ENST00000490099 PGK1P00558 417 aa11.46□□□□□ -0.57
TMEM39A-210ENST00000490099 CST5P28325 142 aaPredicted RBP11.46□□□□□ -0.57
TMEM39A-210ENST00000490099 ATN1P54259 1190 aaPredicted RBP11.46□□□□□ -0.57
TMEM39A-210ENST00000490099 RTP1P59025 263 aa11.46□□□□□ -0.57
TMEM39A-210ENST00000490099 CNTN2Q02246 1040 aa11.46□□□□□ -0.57
TMEM39A-210ENST00000490099 ZNF543Q08ER8 600 aa11.46□□□□□ -0.57
TMEM39A-210ENST00000490099 RNF180Q86T96 592 aa11.46□□□□□ -0.57
TMEM39A-210ENST00000490099 TRERF1Q96PN7 1200 aa11.46□□□□□ -0.57
TMEM39A-210ENST00000490099 UPF3AQ9H1J1 476 aaKnown RBP11.46□□□□□ -0.57
TMEM39A-210ENST00000490099 IL25Q9H293 177 aa11.46□□□□□ -0.57
TMEM39A-210ENST00000490099 RNF146Q9NTX7 359 aa11.46□□□□□ -0.57
TMEM39A-210ENST00000490099 CTDP1Q9Y5B0 961 aaPredicted RBP11.46□□□□□ -0.57
TMEM39A-210ENST00000490099 DNAH12Q6ZR08 3092 aa11.45□□□□□ -0.58
TMEM39A-210ENST00000490099 NEDD4P46934 1319 aa11.45□□□□□ -0.58
TMEM39A-210ENST00000490099 POTEB2H3BUK9 544 aa11.45□□□□□ -0.58
TMEM39A-210ENST00000490099 CTAGE5O15320 804 aa11.45□□□□□ -0.58
TMEM39A-210ENST00000490099 ADCY6O43306 1168 aa11.45□□□□□ -0.58
TMEM39A-210ENST00000490099 GSPT1P15170 499 aaKnown RBP11.45□□□□□ -0.58
TMEM39A-210ENST00000490099 MUM1L1Q5H9M0 696 aa11.45□□□□□ -0.58
TMEM39A-210ENST00000490099 RRP12Q5JTH9 1297 aaKnown RBP11.45□□□□□ -0.58
TMEM39A-210ENST00000490099 TTC22Q5TAA0 569 aa11.45□□□□□ -0.58
TMEM39A-210ENST00000490099 SYDE2Q5VT97 1194 aa11.45□□□□□ -0.58
TMEM39A-210ENST00000490099 ARMCX2Q7L311 632 aa11.45□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms